Rh6BG178900

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000488
Physical Location & Seq
Forward (+)
30835804 .. 30839312
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG178900.1

Sequence Viewer

Length: 1239 bp
ATGGCCTTTAATGCGGTAAAGAGGCCGGCGAATAGGTCAGATATATCGGTGTATTCTCGACCAGGACCAGGAGGAGGAGCTGTCTGCAAGTTCTTCCAGCAAGGAAAATGCACCAAGATAGAGTGTAGGTTCTCCCACGTTGTAGCACCAACTCCACTGACAAACCGGCGAGGTTTGGTTTGGACCAAGGAGGAGACTATTACCAGAAGGGATAAAAACATAGAGAGCATTGTTACGCAGAAGACCGTGGCTACTCCGAAGAGAATGCCTGGCCAGCAAAGCATGGCTACTCAGAAGAGCATTGTTACGCAGAAGAGCATGCCTAGCCAGCAAAGCCTGGCTACCAAGAATAGCATTGCCACCCAGAAAAGCATCGTTACTCAGCAAAGCATCCCTGCCCAGAAAAGCATTGCTACCAAGAAAAATAATGCCATTCTGAAGCCCCTAGAAAGGGTCTGCAATTTCTGGGCTAATGGAAAATGTATGAAAGGTGATAGATGCCCATACCTGCATTCTTGGTTCTGTGGAGATGGGTTCTCCATGTTGGCAAAACTCCAAGACCACAAGAAGATGGTCACTGGTATTGTGCTTCCCGAAGGATCTAGCAAGCTGTATTCAGCCAGTAAAGACGGAACAGTCAGAATTTGGGACTGCCATACTGGTCATTGTGGCAGTGTAATTAATCTTGGTGGTGAAGCTGGTTGTTTATTTAGCAAGGGTCCATGGGTTTTTGCGGGTGCCCCAAATGTTGTTGAGGCATGGAACATTCAGACAAATGCTGAGTTTAGCCTAAGTGCACCTGCTGCGCAAGTGCATGCCATGGAGGTTGGTAATGAAATGCTTTTCGCTGGGACACAGGAAGGTGTTATATTGGTGTGGAAAGATGGTCCCGAGGATAATCCATTTCAGCTTGCTGCACCTCTGGAAGGCCACACCGGTGCTTTGGTATGCTTAAAAGTTGAAGCTGACAGGCTTTACTCGGGTTCTGTGGACCATACTATTAGGGCATGGGACCTTAATACTCTGCAGTCTATTATGACACTAAATGCACATTCTGATGTCGTGACGTCCCTTATTTACTGGGGTCAATTTTTGATCTCATGCTCATTGGACTGCACAATAAAAGTCTGGGCTGAGAAAGGCAACTTGGAAGCAACATACACTCGCACTCAAGAACATGTGTGTTATTTTTTTATCCTTTTTCCAGCATTATTTTCTCAGGGTTTCCTTGTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

412

Amino Acids

45.26

Weight (kDa)

8.92

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_CCCH_4 PF18345 153 - 171 8e-07 Zinc finger domain
Beta-prop_WDR3_1st PF25173 181 - 225 1e-07 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 181 - 227 6.4e-07 WDR5 beta-propeller domain
WD40_Prp19 PF24814 181 - 227 9e-06 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 183 - 380 5e-22 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 243 - 378 1.2e-18 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 245 - 380 1.2e-07 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 247 - 389 6.9e-16 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 251 - 393 7e-09 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 274 - 387 1e-08 TEP-1 second beta-propeller
WD40_Prp19 PF24814 316 - 388 1.9e-07 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 316 - 379 1.2e-07 WDR3 second beta-propeller domain
WD40 PF00400 343 - 377 4.7e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 808
AasI GACNNNNNNGTC 1 cut(s) 635
AatII GACGTC 1 cut(s) 1070
Acc16I TGCGCA 1 cut(s) 807
Acc36I ACCTGC 2 cut(s) 516, 808
AccB1I GGYRCC 1 cut(s) 737
AciI CCGC 2 cut(s) 14, 734
AclWI GGATC 1 cut(s) 607
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 1067
AfiI CCNNNNNNNGG 5 cut(s) 68, 74, 450, 451, 926
AflIII ACRYGT 1 cut(s) 1177
AgeI ACCGGT 1 cut(s) 935
AgsI TTSAA 1 cut(s) 962
AjnI CCWGG 4 cut(s) 61, 67, 268, 336
AjuI GAANNNNNNNTTGG 2 cut(s) 1130, 1162
AleI CACNNNNGTG 1 cut(s) 936
AluBI AGCT 5 cut(s) 80, 610, 698, 910, 965
AluI AGCT 5 cut(s) 80, 610, 698, 910, 965
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 1 cut(s) 188
Alw44I GTGCAC 1 cut(s) 795
AlwI GGATC 1 cut(s) 607
Ama87I CYCGRG 2 cut(s) 890, 979
AoxI GGCC 4 cut(s) 3, 23, 271, 928
ApaLI GTGCAC 1 cut(s) 795
ApeKI GCWGC 2 cut(s) 803, 914
ApoI RAATTY 1 cut(s) 642
AseI ATTAAT 1 cut(s) 681
AsiGI ACCGGT 1 cut(s) 935
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 6 cut(s) 65, 183, 719, 887, 991, 1012
AsuHPI GGTGA 2 cut(s) 503, 704
AvaI CYCGRG 2 cut(s) 890, 979
AvaII GGWCC 6 cut(s) 65, 183, 719, 887, 991, 1012
BaeGI GKGCMC 2 cut(s) 742, 799
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 2 cut(s) 790, 901
BccI CCATC 3 cut(s) 524, 565, 878
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 4 cut(s) 63, 69, 270, 338
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 4 cut(s) 324, 446, 603, 1237
BfmI CTRYAG 1 cut(s) 1025
BfuAI ACCTGC 2 cut(s) 516, 808
BisI GCNGC 2 cut(s) 804, 915
BlsI GCNGC 2 cut(s) 805, 916
Bme1390I CCNGG 4 cut(s) 63, 69, 270, 338
Bme18I GGWCC 6 cut(s) 65, 183, 719, 887, 991, 1012
BmeT110I CYCGRG 2 cut(s) 890, 979
BmgT120I GGNCC 6 cut(s) 65, 183, 719, 887, 991, 1012
BmiI GGNNCC 4 cut(s) 720, 739, 889, 1013
BmrFI CCNGG 4 cut(s) 63, 69, 270, 338
BmrI ACTGGG 1 cut(s) 1090
BmsI GCATC 3 cut(s) 381, 399, 488
BmuI ACTGGG 1 cut(s) 1090
BpiI GAAGAC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 1155
BsaHI GRCGYC 1 cut(s) 1067
BsaJI CCNNGG 5 cut(s) 186, 246, 722, 819, 891
BsaWI WCCGGW 1 cut(s) 935
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 74, 450, 451, 926
Bse118I RCCGGY 3 cut(s) 25, 165, 935
Bse1I ACTGG 4 cut(s) 583, 621, 664, 1085
Bse3DI GCAATG 2 cut(s) 354, 408
BseBI CCWGG 4 cut(s) 63, 69, 270, 338
BseDI CCNNGG 5 cut(s) 186, 246, 722, 819, 891
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 5 cut(s) 68, 74, 450, 451, 926
BseMI GCAATG 2 cut(s) 354, 408
BseMII CTCAG 5 cut(s) 305, 395, 771, 1125, 1232
BseNI ACTGG 4 cut(s) 583, 621, 664, 1085
BseRI GAGGAG 3 cut(s) 87, 90, 206
BseSI GKGCMC 2 cut(s) 742, 799
BseXI GCAGC 2 cut(s) 790, 901
BseYI CCCAGC 1 cut(s) 848
BsgI GTGCAG 2 cut(s) 900, 1099
BshFI GGCC 4 cut(s) 5, 25, 273, 930
BshNI GGYRCC 1 cut(s) 737
BshTI ACCGGT 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 799
BsiHKCI CYCGRG 2 cut(s) 890, 979
BsiSI CCGG 3 cut(s) 26, 166, 936
BslFI GGGAC 5 cut(s) 662, 865, 873, 1025, 1054
BslI CCNNNNNNNGG 5 cut(s) 68, 74, 450, 451, 926
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 5 cut(s) 662, 865, 873, 1025, 1054
BsmI GAATGC 2 cut(s) 270, 511
BsnI GGCC 4 cut(s) 5, 25, 273, 930
BsoBI CYCGRG 2 cut(s) 890, 979
Bsp1286I GDGCHC 2 cut(s) 742, 799
Bsp143I GATC 2 cut(s) 599, 1095
Bsp19I CCATGG 2 cut(s) 722, 819
BspACI CCGC 2 cut(s) 14, 734
BspANI GGCC 4 cut(s) 5, 25, 273, 930
BspCNI CTCAG 5 cut(s) 304, 394, 772, 1126, 1231
BspLI GGNNCC 4 cut(s) 720, 739, 889, 1013
BspMAI CTGCAG 1 cut(s) 1029
BspMI ACCTGC 2 cut(s) 516, 808
BspPI GGATC 1 cut(s) 607
BspQI GCTCTTC 2 cut(s) 290, 308
BspT107I GGYRCC 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 354, 408
BsrFI RCCGGY 3 cut(s) 25, 165, 935
BsrI ACTGG 4 cut(s) 583, 621, 664, 1085
BssAI RCCGGY 3 cut(s) 25, 165, 935
BssECI CCNNGG 5 cut(s) 186, 246, 722, 819, 891
BssMI GATC 2 cut(s) 599, 1095
BssNI GRCGYC 1 cut(s) 1067
BssT1I CCWWGG 3 cut(s) 186, 722, 819
Bst2UI CCWGG 4 cut(s) 63, 69, 270, 338
Bst4CI ACNGT 2 cut(s) 247, 637
Bst6I CTCTTC 3 cut(s) 254, 290, 308
BstACI GRCGYC 1 cut(s) 1067
BstAPI GCANNNNNTGC 1 cut(s) 803
BstC8I GCNNGC 7 cut(s) 27, 275, 320, 329, 608, 816, 912
BstDEI CTNAG 6 cut(s) 291, 381, 780, 791, 1134, 1218
BstDSI CCRYGG 3 cut(s) 246, 722, 819
BstENI CCTNNNNNAGG 1 cut(s) 924
BstF5I GGATG 1 cut(s) 390
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 2 cut(s) 602, 1098
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 599, 1095
BstMWI GCNNNNNNNGC 7 cut(s) 11, 274, 279, 324, 328, 333, 803
BstNI CCWGG 4 cut(s) 63, 69, 270, 338
BstNSI RCATGY 3 cut(s) 322, 818, 1181
BstSCI CCNGG 4 cut(s) 61, 67, 268, 336
BstSFI CTRYAG 1 cut(s) 1025
BstSLI GKGCMC 2 cut(s) 742, 799
BstV1I GCAGC 2 cut(s) 790, 901
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BsuRI GGCC 4 cut(s) 5, 25, 273, 930
BtgI CCRYGG 3 cut(s) 246, 722, 819
BtsCI GGATG 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 3 cut(s) 155, 576, 679
BveI ACCTGC 2 cut(s) 516, 808
Cac8I GCNNGC 7 cut(s) 27, 275, 320, 329, 608, 816, 912
CfoI GCGC 1 cut(s) 808
Cfr10I RCCGGY 3 cut(s) 25, 165, 935
Cfr13I GGNCC 6 cut(s) 65, 183, 719, 887, 991, 1012
CspAI ACCGGT 1 cut(s) 935
DdeI CTNAG 6 cut(s) 291, 381, 780, 791, 1134, 1218
DpnI GATC 2 cut(s) 601, 1097
DpnII GATC 2 cut(s) 599, 1095
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 254, 290, 308
EarI CTCTTC 3 cut(s) 254, 290, 308
Eco130I CCWWGG 3 cut(s) 186, 722, 819
Eco47I GGWCC 6 cut(s) 65, 183, 719, 887, 991, 1012
Eco57I CTGAAG 1 cut(s) 458
Eco88I CYCGRG 2 cut(s) 890, 979
EcoNI CCTNNNNNAGG 1 cut(s) 924
EcoO109I RGGNCCY 1 cut(s) 1012
EcoRII CCWGG 4 cut(s) 61, 67, 268, 336
EcoT14I CCWWGG 3 cut(s) 186, 722, 819
ErhI CCWWGG 3 cut(s) 186, 722, 819
FaqI GGGAC 5 cut(s) 662, 865, 873, 1025, 1054
FauI CCCGC 1 cut(s) 727
Fnu4HI GCNGC 2 cut(s) 804, 915
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 804, 915
FspBI CTAG 4 cut(s) 324, 446, 603, 1237
FspI TGCGCA 1 cut(s) 807
GlaI GCGC 1 cut(s) 807
GluI GCNGC 2 cut(s) 804, 915
GsaI CCCAGC 1 cut(s) 852
HaeIII GGCC 4 cut(s) 5, 25, 273, 930
HapII CCGG 3 cut(s) 26, 166, 936
HhaI GCGC 1 cut(s) 808
Hin1I GRCGYC 1 cut(s) 1067
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HpaII CCGG 3 cut(s) 26, 166, 936
HphI GGTGA 2 cut(s) 503, 704
Hpy166II GTNNAC 3 cut(s) 797, 991, 1234
Hpy188I TCNGA 7 cut(s) 40, 258, 294, 438, 641, 771, 1057
Hpy188III TCNNGA 6 cut(s) 57, 593, 890, 923, 1063, 1172
Hpy8I GTNNAC 3 cut(s) 797, 991, 1234
HpyAV CCTTC 4 cut(s) 201, 590, 854, 920
HpyCH4III ACNGT 2 cut(s) 247, 637
HpyCH4IV ACGT 2 cut(s) 138, 1067
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 274, 279, 324, 328, 333, 803
HpyF3I CTNAG 6 cut(s) 291, 381, 780, 791, 1134, 1218
HpySE526I ACGT 2 cut(s) 138, 1067
Hsp92I GRCGYC 1 cut(s) 1067
HspAI GCGC 1 cut(s) 806
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 599, 1095
LguI GCTCTTC 2 cut(s) 290, 308
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 2 cut(s) 790, 901
LweI GCATC 3 cut(s) 381, 399, 488
MaeI CTAG 4 cut(s) 324, 446, 603, 1237
MaeII ACGT 2 cut(s) 138, 1067
MaeIII GTNAC 5 cut(s) 232, 304, 376, 574, 1063
MalI GATC 2 cut(s) 601, 1097
MboI GATC 2 cut(s) 599, 1095
MboII GAAGA 6 cut(s) 85, 253, 271, 307, 325, 580
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 2 cut(s) 742, 799
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 4 cut(s) 460, 642, 678, 1088
MluNI TGGCCA 1 cut(s) 273
MnlI CCTC 9 cut(s) 15, 65, 68, 164, 184, 748, 817, 886, 930
Mox20I TGGCCA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 273
MseI TTAA 4 cut(s) 9, 681, 953, 1017
MslI CAYNNNNRTG 2 cut(s) 936, 1056
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 3 cut(s) 26, 166, 936
MspR9I CCNGG 4 cut(s) 63, 69, 270, 338
Mva1269I GAATGC 2 cut(s) 270, 511
MvaI CCWGG 4 cut(s) 63, 69, 270, 338
MwoI GCNNNNNNNGC 7 cut(s) 11, 274, 279, 324, 328, 333, 803
NaeI GCCGGC 1 cut(s) 27
NcoI CCATGG 2 cut(s) 722, 819
NdeII GATC 2 cut(s) 599, 1095
NgoMIV GCCGGC 1 cut(s) 25
NlaIV GGNNCC 4 cut(s) 720, 739, 889, 1013
NmuCI GTSAC 2 cut(s) 574, 1063
NsbI TGCGCA 1 cut(s) 807
NspI RCATGY 3 cut(s) 322, 818, 1181
OliI CACNNNNGTG 1 cut(s) 936
PaeI GCATGC 2 cut(s) 322, 818
PaqCI CACCTGC 1 cut(s) 808
PciI ACATGT 1 cut(s) 1177
PciSI GCTCTTC 2 cut(s) 290, 308
PctI GAATGC 2 cut(s) 270, 511
PdiI GCCGGC 1 cut(s) 27
PinAI ACCGGT 1 cut(s) 935
PkrI GCNGC 2 cut(s) 805, 916
PpuMI RGGWCCY 1 cut(s) 1012
PscI ACATGT 1 cut(s) 1177
PshBI ATTAAT 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 1012
Psp6I CCWGG 4 cut(s) 61, 67, 268, 336
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 4 cut(s) 61, 67, 268, 336
PspN4I GGNNCC 4 cut(s) 720, 739, 889, 1013
PspPI GGNCC 6 cut(s) 65, 183, 719, 887, 991, 1012
PspPPI RGGWCCY 1 cut(s) 1012
PstI CTGCAG 1 cut(s) 1029
PsuI RGATCY 1 cut(s) 599
RseI CAYNNNNRTG 2 cut(s) 936, 1056
SapI GCTCTTC 2 cut(s) 290, 308
SaqAI TTAA 4 cut(s) 9, 681, 953, 1017
SatI GCNGC 2 cut(s) 804, 915
Sau3AI GATC 2 cut(s) 599, 1095
Sau96I GGNCC 6 cut(s) 65, 183, 719, 887, 991, 1012
ScrFI CCNGG 4 cut(s) 63, 69, 270, 338
SduI GDGCHC 2 cut(s) 742, 799
SfaNI GCATC 3 cut(s) 381, 399, 488
SfcI CTRYAG 1 cut(s) 1025
SgrAI CRCCGGYG 1 cut(s) 935
SinI GGWCC 6 cut(s) 65, 183, 719, 887, 991, 1012
SmiMI CAYNNNNRTG 2 cut(s) 936, 1056
SmlI CTYRAG 1 cut(s) 1170
SmoI CTYRAG 1 cut(s) 1170
SphI GCATGC 2 cut(s) 322, 818
Sse9I AATT 4 cut(s) 460, 642, 678, 1088
SsiI CCGC 2 cut(s) 14, 734
SspMI CTAG 4 cut(s) 324, 446, 603, 1237
StyD4I CCNGG 4 cut(s) 61, 67, 268, 336
StyI CCWWGG 3 cut(s) 186, 722, 819
TaaI ACNGT 2 cut(s) 247, 637
TaiI ACGT 2 cut(s) 141, 1070
TaqI TCGA 1 cut(s) 58
TasI AATT 4 cut(s) 460, 642, 678, 1088
Tru1I TTAA 4 cut(s) 9, 681, 953, 1017
Tru9I TTAA 4 cut(s) 9, 681, 953, 1017
TscAI CASTG 3 cut(s) 162, 583, 679
TseFI GTSAC 2 cut(s) 574, 1063
TseI GCWGC 2 cut(s) 803, 914
Tsp45I GTSAC 2 cut(s) 574, 1063
TspDTI ATGAA 2 cut(s) 500, 849
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 3 cut(s) 162, 583, 679
VneI GTGCAC 1 cut(s) 795
VpaK11BI GGWCC 6 cut(s) 65, 183, 719, 887, 991, 1012
VspI ATTAAT 1 cut(s) 681
XagI CCTNNNNNAGG 1 cut(s) 924
XapI RAATTY 1 cut(s) 642
XceI RCATGY 3 cut(s) 322, 818, 1181
XspI CTAG 4 cut(s) 324, 446, 603, 1237
ZraI GACGTC 1 cut(s) 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.