Rroxscaffold_7G00197610

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000488
Physical Location & Seq
Reverse (-)
41922663 .. 41925946
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197610.1

Sequence Viewer

Length: 1482 bp
ATGGCCTTTAAGGCAGTAAACAGGCCGGCGAATAGGTCAGATATTTCGGTGGATTCTCGACCAGGACCAGGAGGAGGAGCTGTTTGCAAGTTCTTCCAGCAAGGAAAATGCACCAGGATGGACTGTAGGTTCTCCCACGCAGCTCCACGCTCTCGAGGTTGGGTTAGGACCAGAAGGGATAAAAACATAGAGAGCATTGTTATGCAGAAGACCGGGGCTACTCCGAAGAGAATGCCTGGCCAGCAAAGCATGGCTACTCAGAAGAGCATTGTTACGCAGAAGAGCATGCCTAGCCAGCAAAGCCTGGCTAACAAGCAAAGCATGGCTACTAAGAATACCGTTGCCATCCAGAGGAGCATGGCTACCCAGAAAAGCATGCCTAGCCAGCAAAGCCTGGCTACCAAGAATGGCATTGCCACCCAGAAAAGCATCATTGTTCAGCAAAGCATCCCTACCCAGAAAAGCATTATTACCCAGAAAAATAATGCCATTCTGAAGCCCCTAGAAAAGGTCTGCAATTCCTGGGCTAATGGAAAATGTATGAAAGGTGATAGATGCCCATACCTGCATTCTTGGTTCCGTGGAGATGGGTTCTCCATGTTGGCAAAACTCCAAGCCCACAAGAAGACGGTCACTGGTATTGTGCTTCCCGAAGGATCTAGCAAGCTCTATTCAGCCAGTAAAGACGGAACAGTCAGAGTTTGGGACTGCCATACTGGTCATTGTGGCAGTGTAATTAATCTTGGTGGTGAAGCAGGTTGTTTATTTAGCAAGGGTCCATGGGTTTTTGCGGGCGCCCCAAATGTTGTTGAGGTATGGAACACTCAGACAAATGCTGAGTTTAGCCTAAATGCACCTGCTGCGCAAGTGCATGCCATGGAGGTTGGTAATGAAATGCTCTTCGCTGGGACACAGGAGGGCGTTATATTGGTGTGGAAAGATGGTCCCGAGGATAATCCATTTCAGCTTGCTGCACCTCTGGAAGGCCACACCGGTGCTGTGGTATGCTTAAAAGTTGAAGCTGACAGGCTTTACTCGGGTTCTGTGGACCATACTATTAGGGCATGGGACCTTAATACTCTGCAGTCTATTATGACACTAAATGCACATTCTGATGTGGTGACGTCCCTTATTTGCTGGGGTCAATTTTTGATCTCATGCTCATTGGACTGCACAATAAAAGTCTGGGCTGAGAAAGGCAACTTGGAAGCAACATACACTCACACCCAAGAACATGGTCTTCTTGGTCTTTCTGGAGTGGCAGATGCAGAAGCTAAGCCAGTCCTGTTATGTTCATGTAAAGACAATTCTGTTTGGCTCTACGAACTGCCGTCATTTGCTGAAAGGGGCAGATTATTTGCAAAAGAAGAAGTTGGGGCAATTCAGGTAGGACCTGGGGGACTATTCTTCAGTGGGGATGGAACTGGTCTCCTCTCTGTTTGGAAGTGGGTGGAACCTGGCCTCAAAGTAGAGTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

493

Amino Acids

53.45

Weight (kDa)

9.06

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_CCCH_4 PF18345 172 - 190 1e-05 Zinc finger domain
Beta-prop_WDR3_1st PF25173 200 - 244 8.2e-08 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 200 - 246 3.5e-07 WDR5 beta-propeller domain
WD40_Prp19 PF24814 200 - 246 4.2e-06 Prp19 WD40 domain
WD40 PF00400 201 - 236 3.1e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 202 - 377 1.4e-19 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 262 - 441 6.9e-20 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 264 - 411 2.4e-17 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 264 - 481 1.4e-09 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 268 - 377 4.9e-09 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 294 - 408 7.1e-10 TEP-1 second beta-propeller
Beta-prop_SCAP PF24017 327 - 413 9.8e-07 SCAP Beta-propeller
Beta-prop_WDR3_2nd PF25172 329 - 398 5e-08 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 333 - 481 5.8e-11 Prp19 WD40 domain
WD40 PF00400 362 - 396 1e-05 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
AasI GACNNNNNNGTC 1 cut(s) 692
AatII GACGTC 1 cut(s) 1127
Acc16I TGCGCA 1 cut(s) 864
Acc36I ACCTGC 3 cut(s) 573, 746, 865
AccB1I GGYRCC 1 cut(s) 794
AciI CCGC 1 cut(s) 791
AclWI GGATC 1 cut(s) 664
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 515, 1393
AcyI GRCGYC 2 cut(s) 795, 1124
AfiI CCNNNNNNNGG 5 cut(s) 68, 74, 351, 508, 983
AgeI ACCGGT 1 cut(s) 992
AgsI TTSAA 1 cut(s) 1019
AjnI CCWGG 9 cut(s) 61, 67, 113, 235, 303, 393, 521, 1393, 1456
AjuI GAANNNNNNNTTGG 2 cut(s) 1187, 1219
AleI CACNNNNGTG 1 cut(s) 993
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 6 cut(s) 80, 143, 667, 967, 1022, 1274
AluI AGCT 6 cut(s) 80, 143, 667, 967, 1022, 1274
Alw26I GTCTC 1 cut(s) 1433
AlwI GGATC 1 cut(s) 664
Ama87I CYCGRG 3 cut(s) 153, 947, 1036
AoxI GGCC 5 cut(s) 3, 23, 238, 985, 1459
ApeKI GCWGC 3 cut(s) 140, 860, 971
AseI ATTAAT 1 cut(s) 738
AsiGI ACCGGT 1 cut(s) 992
AspLEI GCGC 2 cut(s) 797, 865
AspS9I GGNCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 3 cut(s) 560, 761, 1132
AvaI CYCGRG 3 cut(s) 153, 947, 1036
AvaII GGWCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
BalI TGGCCA 1 cut(s) 240
BanI GGYRCC 1 cut(s) 794
BbsI GAAGAC 4 cut(s) 215, 632, 1232, 1467
BbvI GCAGC 3 cut(s) 152, 847, 958
BccI CCATC 5 cut(s) 112, 353, 581, 935, 1412
BceAI ACGGC 1 cut(s) 1315
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 9 cut(s) 63, 69, 115, 237, 305, 395, 523, 1395, 1458
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 1433
BfaI CTAG 4 cut(s) 291, 381, 503, 660
BfmI CTRYAG 2 cut(s) 124, 1082
BfoI RGCGCY 1 cut(s) 798
BfuAI ACCTGC 3 cut(s) 573, 746, 865
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 3 cut(s) 141, 861, 972
BlpI GCTNAGC 1 cut(s) 1275
BlsI GCNGC 3 cut(s) 142, 862, 973
Bme18I GGWCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
BmeT110I CYCGRG 3 cut(s) 153, 947, 1036
BmgT120I GGNCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
BmiI GGNNCC 6 cut(s) 578, 777, 796, 946, 1070, 1455
BmsI GCATC 4 cut(s) 438, 456, 545, 1255
BpiI GAAGAC 4 cut(s) 215, 632, 1232, 1467
BpmI CTGGAG 1 cut(s) 1275
Bpu1102I GCTNAGC 1 cut(s) 1275
BpuMI CCSGG 1 cut(s) 214
BsaHI GRCGYC 2 cut(s) 795, 1124
BsaI GGTCTC 1 cut(s) 1433
BsaJI CCNNGG 7 cut(s) 213, 522, 580, 779, 876, 948, 1394
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 74, 351, 508, 983
Bse118I RCCGGY 2 cut(s) 25, 992
Bse1I ACTGG 5 cut(s) 640, 678, 721, 1280, 1429
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 9 cut(s) 63, 69, 115, 237, 305, 395, 523, 1395, 1458
BseDI CCNNGG 7 cut(s) 213, 522, 580, 779, 876, 948, 1394
BseGI GGATG 4 cut(s) 123, 345, 447, 1423
BseLI CCNNNNNNNGG 5 cut(s) 68, 74, 351, 508, 983
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 4 cut(s) 272, 828, 839, 1182
BseNI ACTGG 5 cut(s) 640, 678, 721, 1280, 1429
BseRI GAGGAG 4 cut(s) 87, 90, 367, 1421
BseXI GCAGC 3 cut(s) 152, 847, 958
BseYI CCCAGC 2 cut(s) 905, 1137
BsgI GTGCAG 2 cut(s) 957, 1156
BshFI GGCC 5 cut(s) 5, 25, 240, 987, 1461
BshNI GGYRCC 1 cut(s) 794
BshTI ACCGGT 1 cut(s) 992
BsiHKCI CYCGRG 3 cut(s) 153, 947, 1036
BsiSI CCGG 3 cut(s) 26, 213, 993
BslFI GGGAC 6 cut(s) 719, 922, 930, 1082, 1111, 1413
BslI CCNNNNNNNGG 5 cut(s) 68, 74, 351, 508, 983
BsmAI GTCTC 1 cut(s) 1433
BsmFI GGGAC 6 cut(s) 719, 922, 930, 1082, 1111, 1413
BsmI GAATGC 2 cut(s) 237, 568
BsnI GGCC 5 cut(s) 5, 25, 240, 987, 1461
Bso31I GGTCTC 1 cut(s) 1433
BsoBI CYCGRG 3 cut(s) 153, 947, 1036
Bsp143I GATC 2 cut(s) 656, 1152
Bsp1720I GCTNAGC 1 cut(s) 1275
Bsp19I CCATGG 2 cut(s) 779, 876
BspACI CCGC 1 cut(s) 791
BspANI GGCC 5 cut(s) 5, 25, 240, 987, 1461
BspCNI CTCAG 4 cut(s) 271, 829, 838, 1183
BspHI TCATGA 1 cut(s) 1478
BspLI GGNNCC 6 cut(s) 578, 777, 796, 946, 1070, 1455
BspMAI CTGCAG 1 cut(s) 1086
BspMI ACCTGC 3 cut(s) 573, 746, 865
BspPI GGATC 1 cut(s) 664
BspQI GCTCTTC 3 cut(s) 257, 275, 905
BspT107I GGYRCC 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 1433
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 2 cut(s) 25, 992
BsrI ACTGG 5 cut(s) 640, 678, 721, 1280, 1429
BssAI RCCGGY 2 cut(s) 25, 992
BssECI CCNNGG 7 cut(s) 213, 522, 580, 779, 876, 948, 1394
BssMI GATC 2 cut(s) 656, 1152
BssNI GRCGYC 2 cut(s) 795, 1124
BssT1I CCWWGG 2 cut(s) 779, 876
Bst2UI CCWGG 9 cut(s) 63, 69, 115, 237, 305, 395, 523, 1395, 1458
Bst4CI ACNGT 4 cut(s) 125, 340, 631, 694
Bst6I CTCTTC 4 cut(s) 221, 257, 275, 905
BstACI GRCGYC 2 cut(s) 795, 1124
BstAPI GCANNNNNTGC 1 cut(s) 860
BstDEI CTNAG 6 cut(s) 258, 330, 825, 837, 1191, 1275
BstDSI CCRYGG 3 cut(s) 580, 779, 876
BstENI CCTNNNNNAGG 2 cut(s) 506, 981
BstF5I GGATG 4 cut(s) 123, 345, 447, 1423
BstH2I RGCGCY 1 cut(s) 798
BstHHI GCGC 2 cut(s) 797, 865
BstKTI GATC 2 cut(s) 659, 1155
BstMAI GTCTC 1 cut(s) 1433
BstMBI GATC 2 cut(s) 656, 1152
BstNI CCWGG 9 cut(s) 63, 69, 115, 237, 305, 395, 523, 1395, 1458
BstNSI RCATGY 3 cut(s) 289, 379, 875
BstSFI CTRYAG 2 cut(s) 124, 1082
BstV1I GCAGC 3 cut(s) 152, 847, 958
BstV2I GAAGAC 4 cut(s) 215, 632, 1232, 1467
BstX2I RGATCY 1 cut(s) 656
BstXI CCANNNNNNTGG 1 cut(s) 1235
BstYI RGATCY 1 cut(s) 656
BsuRI GGCC 5 cut(s) 5, 25, 240, 987, 1461
BtgI CCRYGG 3 cut(s) 580, 779, 876
BtsCI GGATG 4 cut(s) 123, 345, 447, 1423
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 3 cut(s) 633, 736, 1417
BveI ACCTGC 3 cut(s) 573, 746, 865
CciI TCATGA 1 cut(s) 1478
CfoI GCGC 2 cut(s) 797, 865
Cfr10I RCCGGY 2 cut(s) 25, 992
Cfr13I GGNCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
CspAI ACCGGT 1 cut(s) 992
DdeI CTNAG 6 cut(s) 258, 330, 825, 837, 1191, 1275
DinI GGCGCC 1 cut(s) 796
DpnI GATC 2 cut(s) 658, 1154
DpnII GATC 2 cut(s) 656, 1152
DrdI GACNNNNNNGTC 1 cut(s) 692
DseDI GACNNNNNNGTC 1 cut(s) 692
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 4 cut(s) 221, 257, 275, 905
EarI CTCTTC 4 cut(s) 221, 257, 275, 905
Eco130I CCWWGG 2 cut(s) 779, 876
Eco31I GGTCTC 1 cut(s) 1433
Eco47I GGWCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
Eco57I CTGAAG 2 cut(s) 515, 1393
Eco88I CYCGRG 3 cut(s) 153, 947, 1036
EcoNI CCTNNNNNAGG 2 cut(s) 506, 981
EcoO109I RGGNCCY 2 cut(s) 1069, 1391
EcoRII CCWGG 9 cut(s) 61, 67, 113, 235, 303, 393, 521, 1393, 1456
EcoT14I CCWWGG 2 cut(s) 779, 876
EgeI GGCGCC 1 cut(s) 796
EheI GGCGCC 1 cut(s) 796
ErhI CCWWGG 2 cut(s) 779, 876
FaqI GGGAC 6 cut(s) 719, 922, 930, 1082, 1111, 1413
FauI CCCGC 1 cut(s) 784
Fnu4HI GCNGC 3 cut(s) 141, 861, 972
FokI GGATG 4 cut(s) 130, 332, 434, 1430
Fsp4HI GCNGC 3 cut(s) 141, 861, 972
FspBI CTAG 4 cut(s) 291, 381, 503, 660
FspI TGCGCA 1 cut(s) 864
GlaI GCGC 2 cut(s) 796, 864
GluI GCNGC 3 cut(s) 141, 861, 972
GsaI CCCAGC 2 cut(s) 909, 1141
GsuI CTGGAG 1 cut(s) 1275
HaeII RGCGCY 1 cut(s) 798
HaeIII GGCC 5 cut(s) 5, 25, 240, 987, 1461
HapII CCGG 3 cut(s) 26, 213, 993
HhaI GCGC 2 cut(s) 797, 865
Hin1I GRCGYC 2 cut(s) 795, 1124
Hin6I GCGC 2 cut(s) 795, 863
HinP1I GCGC 2 cut(s) 795, 863
HinfI GANTC 2 cut(s) 53, 1472
HpaII CCGG 3 cut(s) 26, 213, 993
HphI GGTGA 3 cut(s) 560, 761, 1132
Hpy166II GTNNAC 2 cut(s) 19, 1048
Hpy188I TCNGA 7 cut(s) 40, 225, 261, 495, 698, 828, 1114
Hpy188III TCNNGA 8 cut(s) 57, 153, 349, 650, 947, 980, 1254, 1479
Hpy8I GTNNAC 2 cut(s) 19, 1048
HpyAV CCTTC 3 cut(s) 168, 647, 977
HpyCH4III ACNGT 4 cut(s) 125, 340, 631, 694
HpyCH4IV ACGT 1 cut(s) 1124
HpyF3I CTNAG 6 cut(s) 258, 330, 825, 837, 1191, 1275
HpySE526I ACGT 1 cut(s) 1124
Hsp92I GRCGYC 2 cut(s) 795, 1124
HspAI GCGC 2 cut(s) 795, 863
KasI GGCGCC 1 cut(s) 794
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 656, 1152
LguI GCTCTTC 3 cut(s) 257, 275, 905
LmnI GCTCC 3 cut(s) 77, 148, 354
Lsp1109I GCAGC 3 cut(s) 152, 847, 958
LweI GCATC 4 cut(s) 438, 456, 545, 1255
MaeI CTAG 4 cut(s) 291, 381, 503, 660
MaeII ACGT 1 cut(s) 1124
MaeIII GTNAC 3 cut(s) 271, 631, 1120
MalI GATC 2 cut(s) 658, 1154
MboI GATC 2 cut(s) 656, 1152
MflI RGATCY 1 cut(s) 656
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 5 cut(s) 517, 735, 1145, 1306, 1380
MluNI TGGCCA 1 cut(s) 240
Mly113I GGCGCC 1 cut(s) 795
MlyI GAGTC 1 cut(s) 1481
Mox20I TGGCCA 1 cut(s) 240
MroNI GCCGGC 1 cut(s) 25
MscI TGGCCA 1 cut(s) 240
MseI TTAA 4 cut(s) 9, 738, 1010, 1074
MslI CAYNNNNRTG 4 cut(s) 116, 200, 993, 1113
Msp20I TGGCCA 1 cut(s) 240
MspI CCGG 3 cut(s) 26, 213, 993
Mva1269I GAATGC 2 cut(s) 237, 568
MvaI CCWGG 9 cut(s) 63, 69, 115, 237, 305, 395, 523, 1395, 1458
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 795
NciI CCSGG 1 cut(s) 214
NcoI CCATGG 2 cut(s) 779, 876
NdeII GATC 2 cut(s) 656, 1152
NgoMIV GCCGGC 1 cut(s) 25
NlaIV GGNNCC 6 cut(s) 578, 777, 796, 946, 1070, 1455
NmuCI GTSAC 2 cut(s) 631, 1120
NsbI TGCGCA 1 cut(s) 864
NspI RCATGY 3 cut(s) 289, 379, 875
OliI CACNNNNGTG 1 cut(s) 993
PaeI GCATGC 3 cut(s) 289, 379, 875
PaeR7I CTCGAG 1 cut(s) 153
PagI TCATGA 1 cut(s) 1478
PaqCI CACCTGC 1 cut(s) 865
PciSI GCTCTTC 3 cut(s) 257, 275, 905
PctI GAATGC 2 cut(s) 237, 568
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 53
PinAI ACCGGT 1 cut(s) 992
PkrI GCNGC 3 cut(s) 142, 862, 973
PleI GAGTC 1 cut(s) 1480
PluTI GGCGCC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 1480
PpuMI RGGWCCY 2 cut(s) 1069, 1391
PshBI ATTAAT 1 cut(s) 738
Psp5II RGGWCCY 2 cut(s) 1069, 1391
Psp6I CCWGG 9 cut(s) 61, 67, 113, 235, 303, 393, 521, 1393, 1456
PspFI CCCAGC 2 cut(s) 905, 1137
PspGI CCWGG 9 cut(s) 61, 67, 113, 235, 303, 393, 521, 1393, 1456
PspN4I GGNNCC 6 cut(s) 578, 777, 796, 946, 1070, 1455
PspPI GGNCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
PspPPI RGGWCCY 2 cut(s) 1069, 1391
PstI CTGCAG 1 cut(s) 1086
PsuI RGATCY 1 cut(s) 656
RseI CAYNNNNRTG 4 cut(s) 116, 200, 993, 1113
SapI GCTCTTC 3 cut(s) 257, 275, 905
SaqAI TTAA 4 cut(s) 9, 738, 1010, 1074
SatI GCNGC 3 cut(s) 141, 861, 972
Sau3AI GATC 2 cut(s) 656, 1152
Sau96I GGNCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
SchI GAGTC 1 cut(s) 1481
SfaNI GCATC 4 cut(s) 438, 456, 545, 1255
SfcI CTRYAG 2 cut(s) 124, 1082
SfoI GGCGCC 1 cut(s) 796
Sfr274I CTCGAG 1 cut(s) 153
SgrAI CRCCGGYG 1 cut(s) 992
SinI GGWCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
SlaI CTCGAG 1 cut(s) 153
SmiMI CAYNNNNRTG 4 cut(s) 116, 200, 993, 1113
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SphI GCATGC 3 cut(s) 289, 379, 875
Sse9I AATT 5 cut(s) 517, 735, 1145, 1306, 1380
SsiI CCGC 1 cut(s) 791
SspDI GGCGCC 1 cut(s) 794
SspMI CTAG 4 cut(s) 291, 381, 503, 660
StyI CCWWGG 2 cut(s) 779, 876
TaaI ACNGT 4 cut(s) 125, 340, 631, 694
TaiI ACGT 1 cut(s) 1127
TaqI TCGA 2 cut(s) 58, 154
TasI AATT 5 cut(s) 517, 735, 1145, 1306, 1380
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 4 cut(s) 9, 738, 1010, 1074
Tru9I TTAA 4 cut(s) 9, 738, 1010, 1074
TscAI CASTG 3 cut(s) 640, 736, 1417
TseFI GTSAC 2 cut(s) 631, 1120
TseI GCWGC 3 cut(s) 140, 860, 971
Tsp45I GTSAC 2 cut(s) 631, 1120
TspDTI ATGAA 4 cut(s) 557, 906, 1284, 1467
TspGWI ACGGA 2 cut(s) 569, 702
TspRI CASTG 3 cut(s) 640, 736, 1417
VpaK11BI GGWCC 7 cut(s) 65, 168, 776, 944, 1048, 1069, 1391
VspI ATTAAT 1 cut(s) 738
XagI CCTNNNNNAGG 2 cut(s) 506, 981
XceI RCATGY 3 cut(s) 289, 379, 875
XhoI CTCGAG 1 cut(s) 153
XspI CTAG 4 cut(s) 291, 381, 503, 660
ZraI GACGTC 1 cut(s) 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.