AT5G51980

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000488
Physical Location & Seq
Reverse (-)
21113361 .. 21116314
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51980.2

Sequence Viewer

Length: 1314 bp
ATGGATTTCGATTTGAACGGAGGAAACAAACGAGTCTTCAACAGACTCGGTGGCGGTGGCGGGTCAACTCGTCCGATGGCACCAACGGATACAAGACAAAAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTTCTCCTTGTCCTTATCTACATCGGGAATTACCGGGTCCTGGTCCGGGTCAAGGTCAAGGCCCGGGTTATACGAACAAAAGGGTCGCTGAGGAATCTGGTTTCGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAATGGGAACTCGAGTAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACGAAGACTGAGAAAGTTTGCAACTTTTGGGTAGATGGGAATTGCACATACGGTGATAAGTGTAGATACTTGCATTGTTGGAGTAAAGGAGAGAGCTTTGCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCTTGTTAGTGGTATTGCTTTGCCTTCTGGTTCTGATAAGCTTTACACTGGAAGTAAAGATGAGACCTTGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTCAAACTTGGTGGGGAAATTGGCTGTGTGCTTAGTGAAGGCCCGTGGCTATTAGTTGGCATGCCAAACCTTGTCAAGGCGTGGAATATTGAAACCAATGCTGACCAGAGTCTAAGTGGACCTGTTGGCCAAGTCTATTCTCTTGTTGTGGGTACTGATCTGCTCTTTGCTGGAACACAGGATGGCTCTATTTTGGCATGGAGATATAATGCTGCCACTAACTGTTTTGAACCATCAGCGTCACTGACGGGCCATACACTTGCAGTTGTTACCTTATATGTTGGGGCGAACAGACTTTATTCGGGTTCCATGGACAAAACTATAAAAGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCATTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTTCATTGGACAACACGGTTAAGATATGGGCTGCAATCGAAGGTGGCAATTTGGAAGTAACATATACTCACAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCTGTTTTGTTATGCGCTTGCAATGACAACACCTTGCGCCTCTACGACTTACCATCATTTACGGAGAGGGGAAAAATCTTTGCAAAGCAAGAGATACGGGCGATCCAGATAGGTCCCGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAAATGGTGCACTGAACCAACCGCGGCTTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

437

Amino Acids

47.29

Weight (kDa)

7.46

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_4 PF18044 113 - 133 9.4e-07 CCCH-type zinc finger
zf_CCCH_4 PF18345 115 - 133 3.3e-07 Zinc finger domain
Beta-prop_WDR3_1st PF25173 135 - 256 1e-08 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 135 - 190 1.4e-06 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 144 - 320 3.6e-21 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 156 - 344 1.9e-07 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 201 - 352 1.4e-09 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 206 - 388 1.8e-19 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 207 - 430 6.1e-12 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 211 - 389 4.7e-17 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 237 - 350 4.8e-07 TEP-1 second beta-propeller
WD40_Prp19 PF24814 240 - 320 7.7e-07 Prp19 WD40 domain
WDR55 PF24796 240 - 389 4.5e-08 WDR55
Beta-prop_WDR3_2nd PF25172 265 - 387 6.7e-11 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 268 - 390 9.5e-06 G protein beta WD-40 repeat protein
Beta-prop_SCAP PF24017 273 - 356 2.3e-06 SCAP Beta-propeller
WD40_MABP1-WDR62_2nd PF24782 282 - 390 1.2e-06 MABP1/WDR62 second WD40 domain
Beta-prop_THOC3 PF25174 285 - 429 1.2e-14 THOC3 beta-propeller domain
WD40_Prp19 PF24814 325 - 428 3.2e-07 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 919
AccII CGCG 2 cut(s) 242, 1301
AciI CCGC 5 cut(s) 54, 60, 242, 1299, 1301
AclWI GGATC 2 cut(s) 978, 1210
AcoI YGGCCR 1 cut(s) 691
AfaI GTAC 4 cut(s) 556, 564, 718, 1095
AfiI CCNNNNNNNGG 4 cut(s) 176, 182, 188, 640
AgsI TTSAA 4 cut(s) 16, 40, 656, 794
AjnI CCWGG 2 cut(s) 175, 265
AluBI AGCT 5 cut(s) 420, 439, 457, 496, 1082
AluI AGCT 5 cut(s) 420, 439, 457, 496, 1082
Alw21I GWGCWC 1 cut(s) 1289
Alw26I GTCTC 2 cut(s) 512, 960
Alw44I GTGCAC 1 cut(s) 1285
AlwI GGATC 2 cut(s) 978, 1210
Ama87I CYCGRG 3 cut(s) 199, 283, 1229
AoxI GGCC 4 cut(s) 196, 604, 691, 814
ApaLI GTGCAC 1 cut(s) 1285
ApeKI GCWGC 2 cut(s) 776, 1019
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspLEI GCGC 2 cut(s) 1130, 1152
AspS9I GGNCC 9 cut(s) 173, 179, 197, 245, 263, 605, 683, 814, 1226
AsuC2I CCSGG 7 cut(s) 124, 171, 183, 200, 201, 1230, 1231
AsuHPI GGTGA 3 cut(s) 334, 389, 1262
AsuNHI GCTAGC 1 cut(s) 1078
AvaI CYCGRG 3 cut(s) 199, 283, 1229
AvaII GGWCC 6 cut(s) 173, 179, 245, 263, 683, 1226
BaeGI GKGCMC 1 cut(s) 1289
BalI TGGCCA 1 cut(s) 693
BanI GGYRCC 1 cut(s) 79
BbsI GAAGAC 2 cut(s) 28, 335
Bbv12I GWGCWC 1 cut(s) 1289
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 763, 1006
BccI CCATC 6 cut(s) 70, 353, 437, 740, 805, 1174
BciT130I CCWGG 2 cut(s) 177, 267
BciVI GTATCC 1 cut(s) 82
BclI TGATCA 1 cut(s) 934
BcnI CCSGG 7 cut(s) 124, 171, 183, 200, 201, 1230, 1231
BcoDI GTCTC 2 cut(s) 512, 960
BfaI CTAG 1 cut(s) 1079
BfmI CTRYAG 1 cut(s) 911
BfuI GTATCC 1 cut(s) 82
BisI GCNGC 3 cut(s) 777, 1020, 1302
BlsI GCNGC 3 cut(s) 778, 1021, 1303
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 9 cut(s) 124, 171, 177, 183, 200, 201, 267, 1230, 1231
Bme18I GGWCC 6 cut(s) 173, 179, 245, 263, 683, 1226
BmeT110I CYCGRG 3 cut(s) 199, 283, 1229
BmgT120I GGNCC 9 cut(s) 173, 179, 197, 245, 263, 605, 683, 814, 1226
BmiI GGNNCC 5 cut(s) 81, 174, 246, 871, 1228
BmrFI CCNGG 9 cut(s) 124, 171, 177, 183, 200, 201, 267, 1230, 1231
BmsI GCATC 1 cut(s) 1090
BmtI GCTAGC 1 cut(s) 1082
BoxI GACNNNNGTC 1 cut(s) 672
BpiI GAAGAC 2 cut(s) 28, 335
Bpu10I CCTNAGC 1 cut(s) 225
BpuMI CCSGG 7 cut(s) 124, 171, 183, 200, 201, 1230, 1231
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 7 cut(s) 199, 266, 608, 873, 1229, 1230, 1299
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 182, 188, 640
Bse1I ACTGG 3 cut(s) 119, 508, 1264
Bse3DI GCAATG 1 cut(s) 1141
BseBI CCWGG 2 cut(s) 177, 267
BseDI CCNNGG 7 cut(s) 199, 266, 608, 873, 1229, 1230, 1299
BseGI GGATG 1 cut(s) 751
BseLI CCNNNNNNNGG 4 cut(s) 176, 182, 188, 640
BseMI GCAATG 1 cut(s) 1141
BseMII CTCAG 3 cut(s) 216, 324, 449
BseNI ACTGG 3 cut(s) 119, 508, 1264
BseSI GKGCMC 1 cut(s) 1289
BseXI GCAGC 2 cut(s) 763, 1006
BseYI CCCAGC 1 cut(s) 966
Bsh1236I CGCG 2 cut(s) 242, 1301
BshFI GGCC 4 cut(s) 198, 606, 693, 816
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 1289
BsiHKCI CYCGRG 3 cut(s) 199, 283, 1229
BsiSI CCGG 5 cut(s) 123, 170, 182, 200, 1230
BslFI GGGAC 1 cut(s) 1212
BslI CCNNNNNNNGG 4 cut(s) 176, 182, 188, 640
BsmAI GTCTC 2 cut(s) 512, 960
BsmFI GGGAC 1 cut(s) 1212
BsnI GGCC 4 cut(s) 198, 606, 693, 816
Bso31I GGTCTC 1 cut(s) 512
BsoBI CYCGRG 3 cut(s) 199, 283, 1229
Bsp1286I GDGCHC 1 cut(s) 1289
Bsp1407I TGTACA 2 cut(s) 554, 1093
Bsp143I GATC 4 cut(s) 721, 934, 970, 1215
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 5 cut(s) 54, 60, 242, 1299, 1301
BspANI GGCC 4 cut(s) 198, 606, 693, 816
BspCNI CTCAG 3 cut(s) 217, 325, 448
BspFNI CGCG 2 cut(s) 242, 1301
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 5 cut(s) 81, 174, 246, 871, 1228
BspOI GCTAGC 1 cut(s) 1082
BspPI GGATC 2 cut(s) 978, 1210
BspT107I GGYRCC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 1141
BsrGI TGTACA 2 cut(s) 554, 1093
BsrI ACTGG 3 cut(s) 119, 508, 1264
BssECI CCNNGG 7 cut(s) 199, 266, 608, 873, 1229, 1230, 1299
BssMI GATC 4 cut(s) 721, 934, 970, 1215
BssNAI GTATAC 1 cut(s) 920
BssT1I CCWWGG 1 cut(s) 873
Bst1107I GTATAC 1 cut(s) 920
Bst2UI CCWGG 2 cut(s) 177, 267
Bst4CI ACNGT 6 cut(s) 322, 377, 552, 788, 915, 1006
BstAUI TGTACA 2 cut(s) 554, 1093
BstC8I GCNNGC 4 cut(s) 120, 626, 1080, 1132
BstDEI CTNAG 5 cut(s) 225, 333, 435, 596, 677
BstDSI CCRYGG 3 cut(s) 608, 873, 1299
BstENI CCTNNNNNAGG 1 cut(s) 638
BstF5I GGATG 1 cut(s) 751
BstFNI CGCG 2 cut(s) 242, 1301
BstHHI GCGC 2 cut(s) 1130, 1152
BstKTI GATC 4 cut(s) 724, 937, 973, 1218
BstMAI GTCTC 2 cut(s) 512, 960
BstMBI GATC 4 cut(s) 721, 934, 970, 1215
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 2 cut(s) 177, 267
BstNSI RCATGY 1 cut(s) 628
BstPAI GACNNNNGTC 1 cut(s) 672
BstSCI CCNGG 9 cut(s) 122, 169, 175, 181, 198, 199, 265, 1228, 1229
BstSFI CTRYAG 1 cut(s) 911
BstSLI GKGCMC 1 cut(s) 1289
BstUI CGCG 2 cut(s) 242, 1301
BstV1I GCAGC 2 cut(s) 763, 1006
BstV2I GAAGAC 2 cut(s) 28, 335
BstZ17I GTATAC 1 cut(s) 920
BsuI GTATCC 1 cut(s) 82
BsuRI GGCC 4 cut(s) 198, 606, 693, 816
BtgI CCRYGG 3 cut(s) 608, 873, 1299
BtsCI GGATG 1 cut(s) 751
BtsIMutI CAGTG 7 cut(s) 112, 501, 557, 806, 920, 930, 1287
Cac8I GCNNGC 4 cut(s) 120, 626, 1080, 1132
CciI TCATGA 1 cut(s) 448
CfoI GCGC 2 cut(s) 1130, 1152
Cfr13I GGNCC 9 cut(s) 173, 179, 197, 245, 263, 605, 683, 814, 1226
Cfr42I CCGCGG 1 cut(s) 1302
Cfr9I CCCGGG 2 cut(s) 199, 1229
CseI GACGC 1 cut(s) 792
Csp6I GTAC 4 cut(s) 555, 563, 717, 1094
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 6 cut(s) 449, 625, 762, 874, 1070, 1097
CviQI GTAC 4 cut(s) 555, 563, 717, 1094
DdeI CTNAG 5 cut(s) 225, 333, 435, 596, 677
DpnI GATC 4 cut(s) 723, 936, 972, 1217
DpnII GATC 4 cut(s) 721, 934, 970, 1215
EaeI YGGCCR 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 873
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 6 cut(s) 173, 179, 245, 263, 683, 1226
Eco88I CYCGRG 3 cut(s) 199, 283, 1229
EcoNI CCTNNNNNAGG 1 cut(s) 638
EcoO109I RGGNCCY 3 cut(s) 173, 263, 1226
EcoRII CCWGG 2 cut(s) 175, 265
EcoT14I CCWWGG 1 cut(s) 873
ErhI CCWWGG 1 cut(s) 873
FaeI CATG 6 cut(s) 452, 628, 765, 877, 1073, 1100
FaqI GGGAC 1 cut(s) 1212
FatI CATG 6 cut(s) 448, 624, 761, 873, 1069, 1096
FauI CCCGC 2 cut(s) 53, 235
FbaI TGATCA 1 cut(s) 934
FblI GTMKAC 1 cut(s) 919
Fnu4HI GCNGC 3 cut(s) 777, 1020, 1302
FokI GGATG 1 cut(s) 758
Fsp4HI GCNGC 3 cut(s) 777, 1020, 1302
FspBI CTAG 1 cut(s) 1079
GlaI GCGC 2 cut(s) 1129, 1151
GluI GCNGC 3 cut(s) 777, 1020, 1302
GsaI CCCAGC 1 cut(s) 970
HaeIII GGCC 4 cut(s) 198, 606, 693, 816
HapII CCGG 5 cut(s) 123, 170, 182, 200, 1230
HgaI GACGC 1 cut(s) 792
HhaI GCGC 2 cut(s) 1130, 1152
Hin1II CATG 6 cut(s) 452, 628, 765, 877, 1073, 1100
Hin6I GCGC 2 cut(s) 1128, 1150
HinP1I GCGC 2 cut(s) 1128, 1150
HincII GTYRAC 2 cut(s) 66, 432
HindII GTYRAC 2 cut(s) 66, 432
HindIII AAGCTT 2 cut(s) 455, 494
HinfI GANTC 6 cut(s) 33, 45, 230, 250, 433, 673
HpaII CCGG 5 cut(s) 123, 170, 182, 200, 1230
HphI GGTGA 3 cut(s) 334, 389, 1262
Hpy166II GTNNAC 7 cut(s) 66, 432, 555, 683, 920, 1094, 1287
Hpy188I TCNGA 4 cut(s) 75, 249, 258, 490
Hpy188III TCNNGA 4 cut(s) 161, 449, 546, 1219
Hpy8I GTNNAC 7 cut(s) 66, 432, 555, 683, 920, 1094, 1287
HpyAV CCTTC 3 cut(s) 489, 596, 1022
HpyCH4III ACNGT 6 cut(s) 322, 377, 552, 788, 915, 1006
HpyCH4V TGCA 9 cut(s) 345, 369, 397, 827, 1022, 1103, 1134, 1196, 1287
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 5 cut(s) 225, 333, 435, 596, 677
Hsp92II CATG 6 cut(s) 452, 628, 765, 877, 1073, 1100
HspAI GCGC 2 cut(s) 1128, 1150
Ksp22I TGATCA 1 cut(s) 934
KspI CCGCGG 1 cut(s) 1302
Kzo9I GATC 4 cut(s) 721, 934, 970, 1215
Lsp1109I GCAGC 2 cut(s) 763, 1006
LweI GCATC 1 cut(s) 1090
MaeI CTAG 1 cut(s) 1079
MaeIII GTNAC 5 cut(s) 322, 804, 832, 1045, 1250
MalI GATC 4 cut(s) 723, 936, 972, 1217
MboI GATC 4 cut(s) 721, 934, 970, 1215
MboII GAAGA 3 cut(s) 28, 340, 1076
MhlI GDGCHC 1 cut(s) 1289
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 5 cut(s) 164, 364, 582, 974, 1036
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 5 cut(s) 39, 42, 259, 427, 682
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 5 cut(s) 14, 220, 254, 1163, 1173
Mox20I TGGCCA 1 cut(s) 693
MscI TGGCCA 1 cut(s) 693
MseI TTAA 3 cut(s) 273, 1008, 1269
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 1301
MspI CCGG 5 cut(s) 123, 170, 182, 200, 1230
MspR9I CCNGG 9 cut(s) 124, 171, 177, 183, 200, 201, 267, 1230, 1231
MvaI CCWGG 2 cut(s) 177, 267
MvnI CGCG 2 cut(s) 242, 1301
MwoI GCNNNNNNNGC 1 cut(s) 124
NciI CCSGG 7 cut(s) 124, 171, 183, 200, 201, 1230, 1231
NcoI CCATGG 1 cut(s) 873
NdeII GATC 4 cut(s) 721, 934, 970, 1215
NheI GCTAGC 1 cut(s) 1078
NlaIII CATG 6 cut(s) 452, 628, 765, 877, 1073, 1100
NlaIV GGNNCC 5 cut(s) 81, 174, 246, 871, 1228
NmuCI GTSAC 3 cut(s) 322, 804, 1250
NspI RCATGY 1 cut(s) 628
PaeI GCATGC 1 cut(s) 628
PaeR7I CTCGAG 1 cut(s) 283
PagI TCATGA 1 cut(s) 448
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 3 cut(s) 778, 1021, 1303
PleI GAGTC 5 cut(s) 39, 41, 258, 427, 681
PpsI GAGTC 5 cut(s) 39, 41, 258, 427, 681
PpuMI RGGWCCY 3 cut(s) 173, 263, 1226
PshAI GACNNNNGTC 1 cut(s) 672
Psp5II RGGWCCY 3 cut(s) 173, 263, 1226
Psp6I CCWGG 2 cut(s) 175, 265
PspFI CCCAGC 1 cut(s) 966
PspGI CCWGG 2 cut(s) 175, 265
PspN4I GGNNCC 5 cut(s) 81, 174, 246, 871, 1228
PspPI GGNCC 9 cut(s) 173, 179, 197, 245, 263, 605, 683, 814, 1226
PspPPI RGGWCCY 3 cut(s) 173, 263, 1226
PspXI VCTCGAGB 1 cut(s) 283
RsaI GTAC 4 cut(s) 556, 564, 718, 1095
RsaNI GTAC 4 cut(s) 555, 563, 717, 1094
SacII CCGCGG 1 cut(s) 1302
SaqAI TTAA 3 cut(s) 273, 1008, 1269
SatI GCNGC 3 cut(s) 777, 1020, 1302
Sau3AI GATC 4 cut(s) 721, 934, 970, 1215
Sau96I GGNCC 9 cut(s) 173, 179, 197, 245, 263, 605, 683, 814, 1226
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 5 cut(s) 39, 42, 259, 427, 682
ScrFI CCNGG 9 cut(s) 124, 171, 177, 183, 200, 201, 267, 1230, 1231
SduI GDGCHC 1 cut(s) 1289
SfaNI GCATC 1 cut(s) 1090
SfcI CTRYAG 1 cut(s) 911
Sfr274I CTCGAG 1 cut(s) 283
Sfr303I CCGCGG 1 cut(s) 1302
SgrBI CCGCGG 1 cut(s) 1302
SinI GGWCC 6 cut(s) 173, 179, 245, 263, 683, 1226
SlaI CTCGAG 1 cut(s) 283
SmaI CCCGGG 2 cut(s) 201, 1231
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
SphI GCATGC 1 cut(s) 628
Sse9I AATT 5 cut(s) 164, 364, 582, 974, 1036
SsiI CCGC 5 cut(s) 54, 60, 242, 1299, 1301
SspI AATATT 1 cut(s) 652
SspMI CTAG 1 cut(s) 1079
StyD4I CCNGG 9 cut(s) 122, 169, 175, 181, 198, 199, 265, 1228, 1229
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 6 cut(s) 322, 377, 552, 788, 915, 1006
TaqI TCGA 3 cut(s) 9, 284, 1026
TasI AATT 5 cut(s) 164, 364, 582, 974, 1036
TatI WGTACW 3 cut(s) 554, 562, 1093
TauI GCSGC 1 cut(s) 1304
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 273, 1008, 1269
Tru9I TTAA 3 cut(s) 273, 1008, 1269
TscAI CASTG 7 cut(s) 119, 508, 557, 813, 920, 937, 1294
TseFI GTSAC 3 cut(s) 322, 804, 1250
TseI GCWGC 2 cut(s) 776, 1019
Tsp45I GTSAC 3 cut(s) 322, 804, 1250
TspDTI ATGAA 2 cut(s) 930, 981
TspGWI ACGGA 4 cut(s) 33, 101, 1190, 1269
TspMI CCCGGG 2 cut(s) 199, 1229
TspRI CASTG 7 cut(s) 119, 508, 557, 813, 920, 937, 1294
VneI GTGCAC 1 cut(s) 1285
VpaK11BI GGWCC 6 cut(s) 173, 179, 245, 263, 683, 1226
XagI CCTNNNNNAGG 1 cut(s) 638
XceI RCATGY 1 cut(s) 628
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XhoI CTCGAG 1 cut(s) 283
XmaI CCCGGG 2 cut(s) 199, 1229
XmiI GTMKAC 1 cut(s) 919
XspI CTAG 1 cut(s) 1079
ZrmI AGTACT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.