RLG00000023325

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000488
Physical Location & Seq
Reverse (-)
21955884 .. 22016445
60562 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023325

Sequence Viewer

Length: 531 bp
ATGGCTGCTGTGGTTTGTTTAAGAATTGGATCCTCAGCCACTAAGTTGTACTCAGGTTCCATAGACCATACAACAAAGGTGTGGGATCTCAAAACTTTACAATGTGTTGCAACATTGAGTGGACATTCTGGTGTGGTCACGTCTCTGGTATACTGGGACCAGTTTTTGATCTCCAGCTCATTGGACTGCACGATAAAGGTGTGGCACATGACTGAAACGGGCAACTTCAATTTGGAAGTGATCTACACTCACGCTGTTGAACATGGCATTGTTGCTCTATTTGGGATGCATGATGCACAAGTTAAACCGGTCCTATTTTGTTCTTCTAGTGACAATTCTATCCGCCTATATGATCTGCCATCGTTCACTGAAAGGGCCATATTATTTGGAAAGCAAGAAGTTCTGGCAATTCAGGTAGGAGTTGGAGGGCTGTTCTTTAGAGGAGATGCAAGTGGTCTTCTTTCTGTTTGGAAGTGGTTGGAACCTGCAGTCAAAGTTAGGGATGACAAAAAGATCGCACCGCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04114 ko04120 ko04218 ko04310 ko04340 ko04341 ko04390 ko04624 ko04710 ko05131 map03040 map04114 map04120 map04218 map04310 map04340 map04341 map04390 map04624 map04710 map05131
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

177

Amino Acids

19.35

Weight (kDa)

7.0

Isoelectric Point (pI)

27.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 2 - 119 1.6e-16 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 2 - 125 2.6e-11 WDHD1 first WD40 domain
WD40_Prp19 PF24814 3 - 158 2e-12 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 4 - 119 5.7e-14 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 4 - 71 8.9e-10 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 4 - 130 9.2e-07 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd PF25172 7 - 72 3.3e-08 WDR3 second beta-propeller domain
Beta-prop_SCAP PF24017 11 - 75 2.8e-08 SCAP Beta-propeller
Beta-prop_TEP1_2nd PF25047 15 - 73 1.3e-06 TEP-1 second beta-propeller
WD40_Gbeta PF25391 15 - 135 6.2e-08 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 22 - 72 1.3e-06 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 34 - 68 6.2e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccI GTMKAC 1 cut(s) 150
AciI CCGC 2 cut(s) 343, 521
AclWI GGATC 3 cut(s) 24, 37, 93
AfaI GTAC 1 cut(s) 50
AgeI ACCGGT 1 cut(s) 307
AgsI TTSAA 2 cut(s) 229, 260
AjiI CACGTC 1 cut(s) 141
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 3 cut(s) 24, 37, 93
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 307
AspS9I GGNCC 3 cut(s) 157, 310, 375
AvaII GGWCC 2 cut(s) 157, 310
BamHI GGATCC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 449
BbvCI CCTCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 2 cut(s) 157, 310
BmgBI CACGTC 1 cut(s) 141
BmgT120I GGNCC 3 cut(s) 157, 310, 375
BmiI GGNNCC 4 cut(s) 31, 58, 158, 483
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 3 cut(s) 276, 283, 436
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 34
BsaWI WCCGGW 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 158, 160
BseGI GGATG 2 cut(s) 291, 508
BseMII CTCAG 2 cut(s) 48, 66
BseNI ACTGG 2 cut(s) 158, 160
BseRI GAGGAG 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 377
BshTI ACCGGT 1 cut(s) 307
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 377
Bsp143I GATC 6 cut(s) 29, 85, 168, 240, 352, 513
BspACI CCGC 2 cut(s) 343, 521
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 2 cut(s) 47, 65
BspLI GGNNCC 4 cut(s) 31, 58, 158, 483
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 3 cut(s) 24, 37, 93
BsrFI RCCGGY 1 cut(s) 307
BsrI ACTGG 2 cut(s) 158, 160
BssAI RCCGGY 1 cut(s) 307
BssMI GATC 6 cut(s) 29, 85, 168, 240, 352, 513
BssNAI GTATAC 1 cut(s) 151
Bst1107I GTATAC 1 cut(s) 151
BstDEI CTNAG 3 cut(s) 34, 42, 52
BstF5I GGATG 2 cut(s) 291, 508
BstKTI GATC 6 cut(s) 32, 88, 171, 243, 355, 516
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 6 cut(s) 29, 85, 168, 240, 352, 513
BstSFI CTRYAG 1 cut(s) 486
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 2 cut(s) 29, 85
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 2 cut(s) 29, 85
BstZ17I GTATAC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 377
BtrI CACGTC 1 cut(s) 141
BtsCI GGATG 2 cut(s) 291, 508
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 493
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 157, 310, 375
Csp6I GTAC 1 cut(s) 49
CspAI ACCGGT 1 cut(s) 307
CviAII CATG 3 cut(s) 208, 263, 290
CviJI RGCY 5 cut(s) 5, 38, 177, 377, 430
CviKI_1 RGCY 5 cut(s) 5, 38, 177, 377, 430
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 3 cut(s) 34, 42, 52
DpnI GATC 6 cut(s) 31, 87, 170, 242, 354, 515
DpnII GATC 6 cut(s) 29, 85, 168, 240, 352, 513
EciI GGCGGA 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 157, 310
EcoT22I ATGCAT 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 3 cut(s) 211, 266, 293
FaiI YATR 9 cut(s) 62, 69, 151, 209, 264, 291, 349, 351, 380
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 207, 262, 289
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 298, 515
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 327
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 308
Hin1II CATG 3 cut(s) 211, 266, 293
HpaII CCGG 1 cut(s) 308
Hpy166II GTNNAC 3 cut(s) 122, 151, 366
Hpy8I GTNNAC 3 cut(s) 122, 151, 366
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 6 cut(s) 110, 189, 289, 296, 449, 488
HpyF3I CTNAG 3 cut(s) 34, 42, 52
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 211, 266, 293
Kzo9I GATC 6 cut(s) 29, 85, 168, 240, 352, 513
LweI GCATC 3 cut(s) 276, 283, 436
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 136, 329
MalI GATC 6 cut(s) 31, 87, 170, 242, 354, 515
MboI GATC 6 cut(s) 29, 85, 168, 240, 352, 513
MboII GAAGA 2 cut(s) 315, 449
MflI RGATCY 2 cut(s) 29, 85
MluCI AATT 4 cut(s) 24, 229, 334, 408
MmeI TCCRAC 2 cut(s) 403, 459
MnlI CCTC 3 cut(s) 43, 419, 434
Mph1103I ATGCAT 1 cut(s) 291
MseI TTAA 2 cut(s) 20, 303
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 1 cut(s) 308
NdeII GATC 6 cut(s) 29, 85, 168, 240, 352, 513
NlaIII CATG 3 cut(s) 211, 266, 293
NlaIV GGNNCC 4 cut(s) 31, 58, 158, 483
NmuCI GTSAC 2 cut(s) 136, 329
NsiI ATGCAT 1 cut(s) 291
PinAI ACCGGT 1 cut(s) 307
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 4 cut(s) 31, 58, 158, 483
PspPI GGNCC 3 cut(s) 157, 310, 375
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 2 cut(s) 29, 85
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 2 cut(s) 20, 303
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 6 cut(s) 29, 85, 168, 240, 352, 513
Sau96I GGNCC 3 cut(s) 157, 310, 375
SetI ASST 7 cut(s) 58, 81, 143, 179, 201, 417, 487
SfaNI GCATC 3 cut(s) 276, 283, 436
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 157, 310
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 4 cut(s) 24, 229, 334, 408
SsiI CCGC 2 cut(s) 343, 521
SspMI CTAG 1 cut(s) 327
TaiI ACGT 1 cut(s) 143
TasI AATT 4 cut(s) 24, 229, 334, 408
TatI WGTACW 1 cut(s) 48
Tru1I TTAA 2 cut(s) 20, 303
Tru9I TTAA 2 cut(s) 20, 303
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 136, 329
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 136, 329
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 157, 310
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.