Rh4BG231300

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000488
Physical Location & Seq
Reverse (-)
39578521 .. 39578776
256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG231300.1

Sequence Viewer

Length: 180 bp
ATGAAAACTTCAAAATTTTTACATTCATGGAGCACTGGGGATGGCGTCAGCCTGGTAGCAACCCTAGAGGGGCTTAAGACGAGTGCAACTAGGATAGCTCTGCCGACCGGGTCCAACAAGCTCTACACTGGAAGCAAGGATGAGTCGATAAGGATCCATGGGTTTTTGTTGGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

59

Amino Acids

6.42

Weight (kDa)

9.22

Isoelectric Point (pI)

12.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 148, 161
AcsI RAATTY 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 69
AflII CTTAAG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 12
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 98, 121
AluI AGCT 2 cut(s) 98, 121
Alw21I GWGCWC 1 cut(s) 35
AlwI GGATC 2 cut(s) 148, 161
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 111
BamHI GGATCC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 35
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 1 cut(s) 109
BfaI CTAG 2 cut(s) 65, 90
BfrI CTTAAG 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 53, 109
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 112, 155
BmrFI CCNGG 2 cut(s) 53, 109
BmrI ACTGGG 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 40, 133
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 46, 145
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 40, 133
Bsh1285I CGRYCG 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 153
Bsp19I CCATGG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 112, 155
BspPI GGATC 2 cut(s) 148, 161
BspTI CTTAAG 1 cut(s) 74
BsrI ACTGG 2 cut(s) 40, 133
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 46, 145
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 108
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 51, 107
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 46, 145
BtsIMutI CAGTG 2 cut(s) 33, 126
Cfr13I GGNCC 1 cut(s) 111
CseI GACGC 1 cut(s) 34
CviAII CATG 2 cut(s) 27, 158
CviJI RGCY 4 cut(s) 51, 73, 98, 121
CviKI_1 RGCY 4 cut(s) 51, 73, 98, 121
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 30, 161
FaiI YATR 2 cut(s) 28, 159
FatI CATG 2 cut(s) 26, 157
FokI GGATG 2 cut(s) 53, 152
FspBI CTAG 2 cut(s) 65, 90
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 30, 161
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 30, 161
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 21, 38, 65, 114, 121
MaeI CTAG 2 cut(s) 65, 90
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 138, 150
MnlI CCTC 1 cut(s) 61
MseI TTAA 1 cut(s) 75
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 53, 109
MvaI CCWGG 1 cut(s) 53
NciI CCSGG 1 cut(s) 109
NcoI CCATGG 1 cut(s) 157
NdeII GATC 1 cut(s) 153
NlaIII CATG 2 cut(s) 30, 161
NlaIV GGNNCC 2 cut(s) 112, 155
PflFI GACNNNGTC 1 cut(s) 109
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 112, 155
PspPI GGNCC 1 cut(s) 111
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 53, 109
SduI GDGCHC 1 cut(s) 35
SetI ASST 2 cut(s) 100, 123
SinI GGWCC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 14
SspMI CTAG 2 cut(s) 65, 90
StyD4I CCNGG 2 cut(s) 51, 107
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 146
TasI AATT 1 cut(s) 14
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 2 cut(s) 40, 133
TspDTI ATGAA 2 cut(s) 15, 17
TspRI CASTG 2 cut(s) 40, 133
Tth111I GACNNNGTC 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 1 cut(s) 14
XspI CTAG 2 cut(s) 65, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.