Rmu_sc0004788.1_g000012

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004788.1
OG0000488
Physical Location & Seq
Reverse (-)
53313 .. 54569
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004788.1_g000012.1.cds

Sequence Viewer

Length: 1257 bp
atggctctcagggtatcgaattccagactcacaaggacagaaggatccgtttatgcaaggagacctgcttccgaaaccgtctgcaagttttgggcgatgggtagatgcctcaagaaagagtgccggttcctacacgctgacccggaacaaaagactcttgctttaatggaggagaaggccaaatctattgggaaagcatctgattctgctactgtttatgttaatgttgagaaaagcattggtacccataaagagaaagcaaaggccgaagcagtctgcaaattctgggcagatggaaagtgtgtaagacaagggtgcccttttctgcacagttggttccgtggagatggcttttcttccttggcaaagctccaaggccataagaaggggataaccagaattgtgcttcccgagggaagtagcagtctctattctgctgccaaagacggaaccgttagggtttgggactgcaatactggtgaatgcagcagggtaatcaatcttggtgcggaagctggctgcttgattagtaagggtgtgtggcttttctgcggtgcttccaatctcgtcaaggtgtggaatattcagtccaattctgaatttaccttagctggacctgttggtcaaatccatgccatggaaattgggaatgatatggtatttgctggggcagaggagggtgttatatatgtgtggaaaggcaaagcctgttccgatgctaaagcgaatccatttcaccctcatcaggctctcagtggccacactgctgctgtggtttctttaagggttggaaatatcagactctactcaggttctatggaccaaacaataagggtgtggaatctggacactttggagtgtgctatgactctaaatggacattctgatgctgtgacgtctcttatttgttggaccacatttctgatctcatgctcattagaccacacgataaaggtgtggactatgtgtaaaggaggcaacattgaagaaatctacactcacactgaagaagacggtcttcttgctctctctggaatgcatgatgctgaagacaaaccagtcctactttgctcatcaaaagacaattctgtccgcatatatgatttgccatcctttgatgagaggggaagattatttgcaaaacgggaagttcgggctattcaagttggccctggaggactattctttactggggatgaaactggtggactctccgtgtggaagtggttgcaacctgcagtcaaacaagagtcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04120 map03040 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

418

Amino Acids

45.78

Weight (kDa)

8.26

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 621, 1058, 1088
AatII GACGTC 1 cut(s) 899
Acc36I ACCTGC 2 cut(s) 73, 1243
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 2 cut(s) 242, 315
AccB7I CCANNNNNTGG 1 cut(s) 637
AciI CCGC 3 cut(s) 509, 552, 1093
AclWI GGATC 2 cut(s) 39, 52
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 3 cut(s) 19, 281, 599
AcuI CTGAAG 2 cut(s) 1026, 1068
AcyI GRCGYC 1 cut(s) 896
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 3 cut(s) 385, 637, 745
AgsI TTSAA 2 cut(s) 986, 1163
AjnI CCWGG 1 cut(s) 1171
AluBI AGCT 3 cut(s) 370, 515, 611
AluI AGCT 3 cut(s) 370, 515, 611
Alw26I GTCTC 3 cut(s) 55, 431, 903
AlwI GGATC 2 cut(s) 39, 52
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 5 cut(s) 177, 264, 376, 757, 1168
ApeKI GCWGC 4 cut(s) 437, 486, 519, 767
ApoI RAATTY 3 cut(s) 19, 281, 599
Asp718I GGTACC 1 cut(s) 242
AspS9I GGNCC 4 cut(s) 614, 820, 912, 1169
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 491, 728
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 3 cut(s) 614, 820, 912
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 759
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 2 cut(s) 242, 315
BbsI GAAGAC 3 cut(s) 1010, 1017, 1056
BbvI GCAGC 4 cut(s) 424, 498, 506, 754
BccI CCATC 4 cut(s) 91, 287, 341, 1117
BciT130I CCWGG 1 cut(s) 1173
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 3 cut(s) 55, 431, 903
BfmI CTRYAG 1 cut(s) 1236
BfuAI ACCTGC 2 cut(s) 73, 1243
BisI GCNGC 4 cut(s) 438, 487, 520, 768
BlsI GCNGC 4 cut(s) 439, 488, 521, 769
Bme1390I CCNGG 2 cut(s) 143, 1173
Bme18I GGWCC 3 cut(s) 614, 820, 912
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 4 cut(s) 614, 820, 912, 1169
BmiI GGNNCC 6 cut(s) 46, 128, 244, 317, 338, 451
BmrFI CCNGG 2 cut(s) 143, 1173
BmrI ACTGGG 1 cut(s) 1200
BmsI GCATC 5 cut(s) 95, 206, 706, 877, 1033
BmuI ACTGGG 1 cut(s) 1200
BpiI GAAGAC 3 cut(s) 1010, 1017, 1056
BpmI CTGGAG 1 cut(s) 1194
Bpu10I CCTNAGC 1 cut(s) 607
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 896
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 6 cut(s) 340, 360, 373, 411, 636, 1171
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 637, 745
Bse118I RCCGGY 1 cut(s) 123
Bse1I ACTGG 4 cut(s) 481, 1058, 1195, 1207
BseBI CCWGG 1 cut(s) 1173
BseDI CCNNGG 6 cut(s) 340, 360, 373, 411, 636, 1171
BseGI GGATG 2 cut(s) 1109, 1201
BseLI CCNNNNNNNGG 3 cut(s) 385, 637, 745
BseMII CTCAG 3 cut(s) 22, 766, 822
BseNI ACTGG 4 cut(s) 481, 1058, 1195, 1207
BseRI GAGGAG 2 cut(s) 185, 689
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 4 cut(s) 424, 498, 506, 754
BseYI CCCAGC 1 cut(s) 665
BsgI GTGCAG 1 cut(s) 311
BshFI GGCC 5 cut(s) 179, 266, 378, 759, 1170
BshNI GGYRCC 2 cut(s) 242, 315
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 2 cut(s) 124, 143
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 3 cut(s) 385, 637, 745
BsmAI GTCTC 3 cut(s) 55, 431, 903
BsmBI CGTCTC 1 cut(s) 903
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 2 cut(s) 488, 1041
BsnI GGCC 5 cut(s) 179, 266, 378, 759, 1170
Bso31I GGTCTC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 44, 924
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 3 cut(s) 509, 552, 1093
BspANI GGCC 5 cut(s) 179, 266, 378, 759, 1170
BspCNI CTCAG 3 cut(s) 21, 765, 821
BspLI GGNNCC 6 cut(s) 46, 128, 244, 317, 338, 451
BspMAI CTGCAG 1 cut(s) 1240
BspMI ACCTGC 2 cut(s) 73, 1243
BspPI GGATC 2 cut(s) 39, 52
BspT107I GGYRCC 2 cut(s) 242, 315
BspTNI GGTCTC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 123
BsrI ACTGG 4 cut(s) 481, 1058, 1195, 1207
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 6 cut(s) 340, 360, 373, 411, 636, 1171
BssMI GATC 2 cut(s) 44, 924
BssNI GRCGYC 1 cut(s) 896
BssT1I CCWWGG 3 cut(s) 360, 373, 636
Bst2UI CCWGG 1 cut(s) 1173
Bst4CI ACNGT 5 cut(s) 79, 214, 332, 454, 1016
BstACI GRCGYC 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 4 cut(s) 8, 607, 752, 808
BstDSI CCRYGG 2 cut(s) 340, 636
BstF5I GGATG 2 cut(s) 1109, 1201
BstKTI GATC 2 cut(s) 47, 927
BstMAI GTCTC 3 cut(s) 55, 431, 903
BstMBI GATC 2 cut(s) 44, 924
BstNI CCWGG 1 cut(s) 1173
BstSCI CCNGG 2 cut(s) 141, 1171
BstSFI CTRYAG 1 cut(s) 1236
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 4 cut(s) 424, 498, 506, 754
BstV2I GAAGAC 3 cut(s) 1010, 1017, 1056
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 5 cut(s) 179, 266, 378, 759, 1170
BtgI CCRYGG 2 cut(s) 340, 636
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 2 cut(s) 1109, 1201
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 3 cut(s) 760, 762, 1002
BveI ACCTGC 2 cut(s) 73, 1243
Cac8I GCNNGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 4 cut(s) 614, 820, 912, 1169
Csp6I GTAC 1 cut(s) 243
CviAII CATG 4 cut(s) 632, 637, 930, 1040
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 4 cut(s) 8, 607, 752, 808
DpnI GATC 2 cut(s) 46, 926
DpnII GATC 2 cut(s) 44, 924
DrdI GACNNNNNNGTC 3 cut(s) 621, 1058, 1088
DseDI GACNNNNNNGTC 3 cut(s) 621, 1058, 1088
EaeI YGGCCR 1 cut(s) 757
Eco130I CCWWGG 3 cut(s) 360, 373, 636
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 3 cut(s) 614, 820, 912
Eco57I CTGAAG 2 cut(s) 1026, 1068
Eco88I CYCGRG 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 1171
EcoT14I CCWWGG 3 cut(s) 360, 373, 636
EcoT22I ATGCAT 1 cut(s) 1041
ErhI CCWWGG 3 cut(s) 360, 373, 636
Esp3I CGTCTC 1 cut(s) 903
FaeI CATG 4 cut(s) 635, 640, 933, 1043
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 1 cut(s) 479
FatI CATG 4 cut(s) 631, 636, 929, 1039
Fnu4HI GCNGC 4 cut(s) 438, 487, 520, 768
FokI GGATG 2 cut(s) 1096, 1208
Fsp4HI GCNGC 4 cut(s) 438, 487, 520, 768
GluI GCNGC 4 cut(s) 438, 487, 520, 768
GsaI CCCAGC 1 cut(s) 669
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 5 cut(s) 179, 266, 378, 759, 1170
HapII CCGG 2 cut(s) 124, 143
Hin1I GRCGYC 1 cut(s) 896
Hin1II CATG 4 cut(s) 635, 640, 933, 1043
HinfI GANTC 9 cut(s) 27, 154, 203, 727, 801, 841, 868, 1209, 1250
HpaII CCGG 2 cut(s) 124, 143
HphI GGTGA 2 cut(s) 491, 728
Hpy166II GTNNAC 2 cut(s) 960, 1208
Hpy188I TCNGA 7 cut(s) 73, 202, 598, 715, 800, 886, 924
Hpy188III TCNNGA 6 cut(s) 24, 112, 410, 845, 1032, 1254
Hpy8I GTNNAC 2 cut(s) 960, 1208
HpyAV CCTTC 3 cut(s) 35, 169, 379
HpyCH4III ACNGT 5 cut(s) 79, 214, 332, 454, 1016
HpyCH4IV ACGT 1 cut(s) 896
HpyF3I CTNAG 4 cut(s) 8, 607, 752, 808
HpySE526I ACGT 1 cut(s) 896
Hsp92I GRCGYC 1 cut(s) 896
Hsp92II CATG 4 cut(s) 635, 640, 933, 1043
KpnI GGTACC 1 cut(s) 246
Kzo9I GATC 2 cut(s) 44, 924
LmnI GCTCC 1 cut(s) 375
Lsp1109I GCAGC 4 cut(s) 424, 498, 506, 754
LweI GCATC 5 cut(s) 95, 206, 706, 877, 1033
MaeII ACGT 1 cut(s) 896
MaeIII GTNAC 1 cut(s) 892
MalI GATC 2 cut(s) 46, 926
MboI GATC 2 cut(s) 44, 924
MboII GAAGA 7 cut(s) 348, 998, 1010, 1019, 1022, 1061, 1140
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 7 cut(s) 19, 281, 399, 592, 599, 642, 1084
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 5 cut(s) 21, 148, 795, 862, 1203
MmeI TCCRAC 2 cut(s) 769, 890
MnlI CCTC 9 cut(s) 119, 163, 406, 667, 670, 750, 968, 1116, 1169
Mox20I TGGCCA 1 cut(s) 759
Mph1103I ATGCAT 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 759
MseI TTAA 3 cut(s) 164, 222, 782
MslI CAYNNNNRTG 1 cut(s) 885
Msp20I TGGCCA 1 cut(s) 759
MspI CCGG 2 cut(s) 124, 143
MspR9I CCNGG 2 cut(s) 143, 1173
Mva1269I GAATGC 2 cut(s) 488, 1041
MvaI CCWGG 1 cut(s) 1173
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 1 cut(s) 636
NdeII GATC 2 cut(s) 44, 924
NlaIII CATG 4 cut(s) 635, 640, 933, 1043
NlaIV GGNNCC 6 cut(s) 46, 128, 244, 317, 338, 451
NmuCI GTSAC 1 cut(s) 892
NsiI ATGCAT 1 cut(s) 1041
PctI GAATGC 2 cut(s) 488, 1041
PfeI GAWTC 3 cut(s) 203, 727, 841
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 4 cut(s) 439, 488, 521, 769
PleI GAGTC 5 cut(s) 21, 148, 795, 862, 1203
PpsI GAGTC 5 cut(s) 21, 148, 795, 862, 1203
Psp6I CCWGG 1 cut(s) 1171
PspFI CCCAGC 1 cut(s) 665
PspGI CCWGG 1 cut(s) 1171
PspN4I GGNNCC 6 cut(s) 46, 128, 244, 317, 338, 451
PspPI GGNCC 4 cut(s) 614, 820, 912, 1169
PstI CTGCAG 1 cut(s) 1240
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 3 cut(s) 164, 222, 782
SatI GCNGC 4 cut(s) 438, 487, 520, 768
Sau3AI GATC 2 cut(s) 44, 924
Sau96I GGNCC 4 cut(s) 614, 820, 912, 1169
SchI GAGTC 5 cut(s) 21, 148, 795, 862, 1203
ScrFI CCNGG 2 cut(s) 143, 1173
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 5 cut(s) 95, 206, 706, 877, 1033
SfcI CTRYAG 1 cut(s) 1236
SinI GGWCC 3 cut(s) 614, 820, 912
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 7 cut(s) 19, 281, 399, 592, 599, 642, 1084
SsiI CCGC 3 cut(s) 509, 552, 1093
SspI AATATT 1 cut(s) 583
StyD4I CCNGG 2 cut(s) 141, 1171
StyI CCWWGG 3 cut(s) 360, 373, 636
TaaI ACNGT 5 cut(s) 79, 214, 332, 454, 1016
TaiI ACGT 1 cut(s) 899
TaqI TCGA 1 cut(s) 17
TasI AATT 7 cut(s) 19, 281, 399, 592, 599, 642, 1084
TfiI GAWTC 3 cut(s) 203, 727, 841
Tru1I TTAA 3 cut(s) 164, 222, 782
Tru9I TTAA 3 cut(s) 164, 222, 782
TscAI CASTG 3 cut(s) 760, 769, 1009
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 4 cut(s) 437, 486, 519, 767
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 1 cut(s) 1212
TspGWI ACGGA 4 cut(s) 37, 329, 462, 1204
TspRI CASTG 3 cut(s) 760, 769, 1009
Van91I CCANNNNNTGG 1 cut(s) 637
VpaK11BI GGWCC 3 cut(s) 614, 820, 912
XapI RAATTY 3 cut(s) 19, 281, 599
ZraI GACGTC 1 cut(s) 897
Zsp2I ATGCAT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.