MD02G1195200.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000488
Physical Location & Seq
Forward (+)
18678578 .. 18682160
3583 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1195200.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGGCCACTAAGGCATTAAGGAAGCCCGCAAATAGACCAGAAAGATCAGCGTATAGTCGACCAGTAGGAGGACCTTCAAAATCTGTTTGCATTTATTGGGCGGCTGGAAGATGCACTAAGGAATCCTGTAGGTTTTTGCACCCGGGTGCACCAGAGTCATCCATGAACCTTCACATTTCAAAACAGAAGGCTCTTGTTTGGACAAAGGAGGAAACTGCTACCGGAAAGGGCAATGCATACAATGCTCCTCAGAAAGACAATGCTGCTCAGAAAGGCAATGCATACAATGCTCATCAGAAAAGCATTGCGGCTCAGAAAGGCAATGCTACTCAGAAGAGCAATCCTGGGCCGACAAGCAATGCTACTCAGACAAGCAATGCTATTCAGAAATCCCAAGTCTGCAAGTACTGGGTAGATGGGAATTGTGTGAAAGGTGATCGATGCCTGTATTTGCACAAGTGGTTTAGTGGAAAGGGGTTCTCAATGTTGGCAAAACTCCAAGGGCACAAGAAGGCCGTCACTGGTATTGCACTTCCTGAAAGATCTAACAAGCTTTATTCTGCTGATAAAGACGGAGCAGCCAGAGTTTGGGACTGCTATAATGGTCAGTGTGACCGTGTTGTGAACCTCAGTGATGAAGCAGGTTGTTTAGTTAGTGAAGGACCATGGATTTTCATTGGCGTTCCAAATCTTGTTAAGGCATGGAACATTGAATCAAATGTGGAATTCAATCTGGATGGACCTGCAGGCCAAGTGCATGCTATTGTGGTTGGTAAAGAAATGCTTTTTGCTGGGGCACAGGATGGTGTTATATATGTGTGGAAAGGCTGTCCCCAAACAAATTCGTTTGTTCCTGCAGCAACTCTGAAAGGCCACACTGGTCCTGTTGTATGTTTAATTGTTGGGGCAAACAGGCTGTACTCGGGATCTGTGGACCATACAATCAGGGTTTGGGATCTTGATACTTTACAGTGTGTTATGACACTAAAAGGGCATTCTGGTGTGGTGATGTCTCTTATTTGCTGGGATAAATTTTTGCTCTCGTGTTCATTGGACTGCACAATAAAGGTGTGGGCAGCCATTGAACAAGGCAGCTTGGAAGTGACCTACACCCACAGTGAGGAGCATGGTGTCCTTGATCTTGCTGGAATGACAGACCCGGAAACGAAGCCAATCTTGCTTTGTTCTTGCAATGATAATTCTGTTCGATTATTGGAGCTGCCATCATTTTCTGAAAGGGGCAGATTATTTGCAAAACGAGAAATTCGGAAGATTGGGGTAGGACCTGGAGGATTATTCTTCAGCGGGGATGCAACGGGTCTTGTTTCTGTTTGGAAGTGGATGGAGCCTTACAACAAAGTTGAGTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04120 map03040 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

458

Amino Acids

49.71

Weight (kDa)

8.9

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_CCCH_4 PF18345 134 - 152 3.1e-07 Zinc finger domain
Beta-prop_THOC3 PF25174 163 - 338 1.5e-18 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 228 - 404 6e-22 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 230 - 407 1.7e-18 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 231 - 373 3.4e-09 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 232 - 446 8.9e-12 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 259 - 364 3.6e-06 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 259 - 339 3.8e-07 Prp19 WD40 domain
WD40 PF00400 285 - 319 7e-06 WD domain, G-beta repeat
WD40_Gbeta PF25391 286 - 407 1.5e-08 G protein beta WD-40 repeat protein
WDR55 PF24796 287 - 371 3.6e-06 WDR55
Beta-prop_SCAP PF24017 291 - 373 3.2e-09 SCAP Beta-propeller
Beta-prop_WDR3_2nd PF25172 300 - 360 1.5e-08 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 301 - 389 5.1e-08 TEP-1 second beta-propeller
WD40_Prp19 PF24814 303 - 447 1.1e-10 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 304 - 449 4.9e-13 THOC3 beta-propeller domain
WD40 PF00400 324 - 358 3.1e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 632, 751
AccB7I CCANNNNNTGG 1 cut(s) 588
AccI GTMKAC 1 cut(s) 58
AciI CCGC 4 cut(s) 27, 101, 308, 1305
AclWI GGATC 2 cut(s) 934, 963
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 725, 841, 1031, 1263
AcuI CTGAAG 1 cut(s) 1285
AfaI GTAC 2 cut(s) 407, 920
AfiI CCNNNNNNNGG 3 cut(s) 68, 588, 1120
AgsI TTSAA 5 cut(s) 78, 180, 713, 730, 1085
AjnI CCWGG 2 cut(s) 343, 1285
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 3 cut(s) 553, 1095, 1219
AluI AGCT 3 cut(s) 553, 1095, 1219
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 1017
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 2 cut(s) 934, 963
Ama87I CYCGRG 2 cut(s) 142, 922
AoxI GGCC 5 cut(s) 3, 347, 513, 748, 871
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 6 cut(s) 263, 578, 857, 1076, 1092, 1219
ApoI RAATTY 4 cut(s) 725, 841, 1031, 1263
AspS9I GGNCC 7 cut(s) 71, 347, 662, 740, 881, 934, 1283
AsuC2I CCSGG 3 cut(s) 143, 144, 1160
AsuHPI GGTGA 2 cut(s) 446, 1018
AvaI CYCGRG 2 cut(s) 142, 922
AvaII GGWCC 6 cut(s) 71, 662, 740, 881, 934, 1283
BaeGI GKGCMC 3 cut(s) 151, 507, 799
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 1042
BbsI GAAGAC 1 cut(s) 1359
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 6 cut(s) 250, 590, 869, 1088, 1104, 1206
BccI CCATC 5 cut(s) 410, 731, 797, 1231, 1336
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 2 cut(s) 345, 1287
BcnI CCSGG 3 cut(s) 143, 144, 1160
BcoDI GTCTC 1 cut(s) 1017
BfmI CTRYAG 3 cut(s) 127, 744, 855
BfuAI ACCTGC 2 cut(s) 632, 751
BglI GCCNNNNNGGC 1 cut(s) 11
BglII AGATCT 1 cut(s) 542
BisI GCNGC 8 cut(s) 102, 264, 309, 579, 858, 1077, 1093, 1220
BlsI GCNGC 8 cut(s) 103, 265, 310, 580, 859, 1078, 1094, 1221
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 5 cut(s) 143, 144, 345, 1160, 1287
Bme18I GGWCC 6 cut(s) 71, 662, 740, 881, 934, 1283
BmeT110I CYCGRG 2 cut(s) 142, 922
BmgT120I GGNCC 7 cut(s) 71, 347, 662, 740, 881, 934, 1283
BmiI GGNNCC 1 cut(s) 1347
BmrFI CCNGG 5 cut(s) 143, 144, 345, 1160, 1287
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 3 cut(s) 101, 431, 1300
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 1359
BpmI CTGGAG 1 cut(s) 1308
BpuMI CCSGG 3 cut(s) 143, 144, 1160
Bsa29I ATCGAT 1 cut(s) 439
BsaJI CCNNGG 4 cut(s) 142, 344, 499, 665
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 588, 1120
Bse1I ACTGG 4 cut(s) 62, 413, 526, 883
Bse3DI GCAATG 7 cut(s) 238, 283, 303, 328, 364, 382, 1198
BseBI CCWGG 2 cut(s) 345, 1287
BseCI ATCGAT 1 cut(s) 439
BseDI CCNNGG 4 cut(s) 142, 344, 499, 665
BseGI GGATG 5 cut(s) 158, 742, 808, 1315, 1347
BseLI CCNNNNNNNGG 3 cut(s) 68, 588, 1120
BseMI GCAATG 7 cut(s) 238, 283, 303, 328, 364, 382, 1198
BseMII CTCAG 6 cut(s) 263, 281, 326, 344, 380, 643
BseNI ACTGG 4 cut(s) 62, 413, 526, 883
BseRI GAGGAG 2 cut(s) 237, 1136
BseSI GKGCMC 3 cut(s) 151, 507, 799
BseXI GCAGC 6 cut(s) 250, 590, 869, 1088, 1104, 1206
BseYI CCCAGC 2 cut(s) 791, 1023
BsgI GTGCAG 1 cut(s) 1042
BshFI GGCC 5 cut(s) 5, 349, 515, 750, 873
BshVI ATCGAT 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 2 cut(s) 142, 922
BsiSI CCGG 3 cut(s) 143, 222, 1160
BslFI GGGAC 2 cut(s) 605, 816
BslI CCNNNNNNNGG 3 cut(s) 68, 588, 1120
BsmAI GTCTC 1 cut(s) 1017
BsmFI GGGAC 2 cut(s) 605, 816
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 5 cut(s) 5, 349, 515, 750, 873
BsoBI CYCGRG 2 cut(s) 142, 922
Bsp1286I GDGCHC 3 cut(s) 151, 507, 799
Bsp143I GATC 6 cut(s) 44, 436, 542, 926, 955, 1138
Bsp19I CCATGG 1 cut(s) 665
BspACI CCGC 4 cut(s) 27, 101, 308, 1305
BspANI GGCC 5 cut(s) 5, 349, 515, 750, 873
BspCNI CTCAG 6 cut(s) 262, 280, 325, 343, 379, 642
BspDI ATCGAT 1 cut(s) 439
BspHI TCATGA 1 cut(s) 1370
BspLI GGNNCC 1 cut(s) 1347
BspMAI CTGCAG 2 cut(s) 748, 859
BspMI ACCTGC 2 cut(s) 632, 751
BspPI GGATC 2 cut(s) 934, 963
BspQI GCTCTTC 1 cut(s) 329
BsrDI GCAATG 7 cut(s) 238, 283, 303, 328, 364, 382, 1198
BsrI ACTGG 4 cut(s) 62, 413, 526, 883
BssECI CCNNGG 4 cut(s) 142, 344, 499, 665
BssMI GATC 6 cut(s) 44, 436, 542, 926, 955, 1138
BssSI CACGAG 1 cut(s) 1042
BssT1I CCWWGG 2 cut(s) 499, 665
Bst2BI CACGAG 1 cut(s) 1042
Bst2UI CCWGG 2 cut(s) 345, 1287
Bst4CI ACNGT 3 cut(s) 617, 972, 1118
Bst6I CTCTTC 1 cut(s) 329
BstAPI GCANNNNNTGC 2 cut(s) 242, 287
BstC8I GCNNGC 3 cut(s) 27, 748, 759
BstDEI CTNAG 8 cut(s) 9, 117, 249, 267, 312, 330, 366, 629
BstDSI CCRYGG 1 cut(s) 665
BstF5I GGATG 5 cut(s) 158, 742, 808, 1315, 1347
BstKTI GATC 6 cut(s) 47, 439, 545, 929, 958, 1141
BstMAI GTCTC 1 cut(s) 1017
BstMBI GATC 6 cut(s) 44, 436, 542, 926, 955, 1138
BstMWI GCNNNNNNNGC 4 cut(s) 11, 242, 287, 1177
BstNI CCWGG 2 cut(s) 345, 1287
BstNSI RCATGY 1 cut(s) 761
BstSCI CCNGG 5 cut(s) 141, 142, 343, 1158, 1285
BstSFI CTRYAG 3 cut(s) 127, 744, 855
BstSLI GKGCMC 3 cut(s) 151, 507, 799
BstV1I GCAGC 6 cut(s) 250, 590, 869, 1088, 1104, 1206
BstV2I GAAGAC 1 cut(s) 1359
BstX2I RGATCY 3 cut(s) 542, 926, 955
BstYI RGATCY 3 cut(s) 542, 926, 955
Bsu15I ATCGAT 1 cut(s) 439
BsuRI GGCC 5 cut(s) 5, 349, 515, 750, 873
BsuTUI ATCGAT 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 665
BtsCI GGATG 5 cut(s) 158, 742, 808, 1315, 1347
BtsIMutI CAGTG 6 cut(s) 519, 614, 637, 876, 977, 1123
BveI ACCTGC 2 cut(s) 632, 751
Cac8I GCNNGC 3 cut(s) 27, 748, 759
CciI TCATGA 1 cut(s) 1370
Cfr13I GGNCC 7 cut(s) 71, 347, 662, 740, 881, 934, 1283
Cfr9I CCCGGG 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 439
Csp6I GTAC 2 cut(s) 406, 919
CviAII CATG 6 cut(s) 163, 666, 702, 758, 1127, 1371
CviQI GTAC 2 cut(s) 406, 919
DdeI CTNAG 8 cut(s) 9, 117, 249, 267, 312, 330, 366, 629
DpnI GATC 6 cut(s) 46, 438, 544, 928, 957, 1140
DpnII GATC 6 cut(s) 44, 436, 542, 926, 955, 1138
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 2 cut(s) 499, 665
Eco47I GGWCC 6 cut(s) 71, 662, 740, 881, 934, 1283
Eco57I CTGAAG 1 cut(s) 1285
Eco88I CYCGRG 2 cut(s) 142, 922
EcoO109I RGGNCCY 2 cut(s) 71, 1283
EcoRI GAATTC 1 cut(s) 725
EcoRII CCWGG 2 cut(s) 343, 1285
EcoT14I CCWWGG 2 cut(s) 499, 665
EcoT22I ATGCAT 2 cut(s) 238, 283
ErhI CCWWGG 2 cut(s) 499, 665
FaeI CATG 6 cut(s) 166, 669, 705, 761, 1130, 1374
FalI AAGNNNNNCTT 4 cut(s) 768, 800, 1160, 1192
FaqI GGGAC 2 cut(s) 605, 816
FatI CATG 6 cut(s) 162, 665, 701, 757, 1126, 1370
FauI CCCGC 2 cut(s) 34, 1298
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 8 cut(s) 102, 264, 309, 579, 858, 1077, 1093, 1220
FokI GGATG 5 cut(s) 145, 749, 815, 1322, 1354
Fsp4HI GCNGC 8 cut(s) 102, 264, 309, 579, 858, 1077, 1093, 1220
GluI GCNGC 8 cut(s) 102, 264, 309, 579, 858, 1077, 1093, 1220
GsaI CCCAGC 2 cut(s) 795, 1027
GsuI CTGGAG 1 cut(s) 1308
HaeIII GGCC 5 cut(s) 5, 349, 515, 750, 873
HapII CCGG 3 cut(s) 143, 222, 1160
Hin1II CATG 6 cut(s) 166, 669, 705, 761, 1130, 1374
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 4 cut(s) 122, 155, 713, 1364
HpaII CCGG 3 cut(s) 143, 222, 1160
HphI GGTGA 2 cut(s) 446, 1018
Hpy166II GTNNAC 4 cut(s) 59, 149, 625, 934
Hpy188III TCNNGA 5 cut(s) 536, 734, 924, 959, 1371
Hpy8I GTNNAC 4 cut(s) 59, 149, 625, 934
HpyAV CCTTC 5 cut(s) 84, 179, 181, 505, 653
HpyCH4III ACNGT 3 cut(s) 617, 972, 1118
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 242, 287, 1177
HpyF3I CTNAG 8 cut(s) 9, 117, 249, 267, 312, 330, 366, 629
Hsp92II CATG 6 cut(s) 166, 669, 705, 761, 1130, 1374
Kzo9I GATC 6 cut(s) 44, 436, 542, 926, 955, 1138
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 5 cut(s) 250, 575, 1123, 1216, 1345
Lsp1109I GCAGC 6 cut(s) 250, 590, 869, 1088, 1104, 1206
LweI GCATC 3 cut(s) 101, 431, 1300
MaeIII GTNAC 3 cut(s) 517, 611, 1102
MalI GATC 6 cut(s) 46, 438, 544, 928, 957, 1140
MboI GATC 6 cut(s) 44, 436, 542, 926, 955, 1138
MboII GAAGA 5 cut(s) 120, 346, 1282, 1291, 1359
MflI RGATCY 3 cut(s) 542, 926, 955
MhlI GDGCHC 3 cut(s) 151, 507, 799
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 421, 725, 841, 897, 1031, 1198, 1263
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 164, 1373
MnlI CCTC 6 cut(s) 62, 202, 258, 638, 1114, 1283
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 238, 283
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 17, 696, 896
MslI CAYNNNNRTG 2 cut(s) 144, 999
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1305
MspI CCGG 3 cut(s) 143, 222, 1160
MspR9I CCNGG 5 cut(s) 143, 144, 345, 1160, 1287
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 2 cut(s) 345, 1287
MwoI GCNNNNNNNGC 4 cut(s) 11, 242, 287, 1177
NciI CCSGG 3 cut(s) 143, 144, 1160
NcoI CCATGG 1 cut(s) 665
NdeII GATC 6 cut(s) 44, 436, 542, 926, 955, 1138
NlaIII CATG 6 cut(s) 166, 669, 705, 761, 1130, 1374
NlaIV GGNNCC 1 cut(s) 1347
NmuCI GTSAC 3 cut(s) 517, 611, 1102
NsiI ATGCAT 2 cut(s) 238, 283
NspI RCATGY 1 cut(s) 761
OliI CACNNNNGTG 1 cut(s) 144
PaeI GCATGC 1 cut(s) 761
PagI TCATGA 1 cut(s) 1370
PciSI GCTCTTC 1 cut(s) 329
PctI GAATGC 1 cut(s) 994
PfeI GAWTC 2 cut(s) 122, 713
PflMI CCANNNNNTGG 1 cut(s) 588
PkrI GCNGC 8 cut(s) 103, 265, 310, 580, 859, 1078, 1094, 1221
PleI GAGTC 2 cut(s) 163, 1372
PpsI GAGTC 2 cut(s) 163, 1372
PpuMI RGGWCCY 2 cut(s) 71, 1283
Psp5II RGGWCCY 2 cut(s) 71, 1283
Psp6I CCWGG 2 cut(s) 343, 1285
PspFI CCCAGC 2 cut(s) 791, 1023
PspGI CCWGG 2 cut(s) 343, 1285
PspN4I GGNNCC 1 cut(s) 1347
PspPI GGNCC 7 cut(s) 71, 347, 662, 740, 881, 934, 1283
PspPPI RGGWCCY 2 cut(s) 71, 1283
PstI CTGCAG 2 cut(s) 748, 859
PsuI RGATCY 3 cut(s) 542, 926, 955
RsaI GTAC 2 cut(s) 407, 920
RsaNI GTAC 2 cut(s) 406, 919
RseI CAYNNNNRTG 2 cut(s) 144, 999
SalI GTCGAC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 3 cut(s) 17, 696, 896
SatI GCNGC 8 cut(s) 102, 264, 309, 579, 858, 1077, 1093, 1220
Sau3AI GATC 6 cut(s) 44, 436, 542, 926, 955, 1138
Sau96I GGNCC 7 cut(s) 71, 347, 662, 740, 881, 934, 1283
SbfI CCTGCAGG 1 cut(s) 748
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 2 cut(s) 164, 1373
ScrFI CCNGG 5 cut(s) 143, 144, 345, 1160, 1287
SdaI CCTGCAGG 1 cut(s) 748
SduI GDGCHC 3 cut(s) 151, 507, 799
SfaNI GCATC 3 cut(s) 101, 431, 1300
SfcI CTRYAG 3 cut(s) 127, 744, 855
SinI GGWCC 6 cut(s) 71, 662, 740, 881, 934, 1283
SmaI CCCGGG 1 cut(s) 144
SmiMI CAYNNNNRTG 2 cut(s) 144, 999
SphI GCATGC 1 cut(s) 761
Sse8387I CCTGCAGG 1 cut(s) 748
Sse9I AATT 7 cut(s) 421, 725, 841, 897, 1031, 1198, 1263
SsiI CCGC 4 cut(s) 27, 101, 308, 1305
StyD4I CCNGG 5 cut(s) 141, 142, 343, 1158, 1285
StyI CCWWGG 2 cut(s) 499, 665
TaaI ACNGT 3 cut(s) 617, 972, 1118
TaqI TCGA 3 cut(s) 58, 439, 1207
TasI AATT 7 cut(s) 421, 725, 841, 897, 1031, 1198, 1263
TatI WGTACW 2 cut(s) 405, 918
TauI GCSGC 2 cut(s) 104, 311
TfiI GAWTC 2 cut(s) 122, 713
Tru1I TTAA 3 cut(s) 17, 696, 896
Tru9I TTAA 3 cut(s) 17, 696, 896
TscAI CASTG 6 cut(s) 526, 614, 637, 883, 977, 1123
TseFI GTSAC 3 cut(s) 517, 611, 1102
TseI GCWGC 6 cut(s) 263, 578, 857, 1076, 1092, 1219
Tsp45I GTSAC 3 cut(s) 517, 611, 1102
TspDTI ATGAA 5 cut(s) 179, 651, 664, 1038, 1359
TspGWI ACGGA 1 cut(s) 588
TspMI CCCGGG 1 cut(s) 142
TspRI CASTG 6 cut(s) 526, 614, 637, 883, 977, 1123
Van91I CCANNNNNTGG 1 cut(s) 588
VneI GTGCAC 1 cut(s) 147
VpaK11BI GGWCC 6 cut(s) 71, 662, 740, 881, 934, 1283
XapI RAATTY 4 cut(s) 725, 841, 1031, 1263
XceI RCATGY 1 cut(s) 761
XmaI CCCGGG 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 58
ZrmI AGTACT 1 cut(s) 407
Zsp2I ATGCAT 2 cut(s) 238, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.