MD01G1195600.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000488
Physical Location & Seq
Reverse (-)
29392370 .. 29396477
4108 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1195600.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGGATGTAGACGGAGGGGGAAGCAAACGGGTCTTCAACAGACTGGGTGGGCAGCAATCCGACCCGTCAAAGAACCAGAAGGTATGCTACCATTGGAGGGCGGGCAAGTGCAATCGCCACCCTTGCCCTTTTCTCCACAGAGAGCTCCCGGCGCCGCCGTCGCAGCAAGGTTTCAATGGGACGGCCTCGACTAAGCGCCATCACGCCTTCACGGCCAACACCGATGGTCCATCGTCCCGGAATCGGGGTCCAAATAACTTCAATGGCGGGGCTTCTTCGACGTGGGGCCGTACAGGAGGAGCGAATAGGGTGTTTGTTAGGAAGATGGAGAAAGTCTGTAATTTTTGGGTTCAGGGGAATTGCAGCTATGGGGACAAGTGTAAGTTCTTGCATTCTTGGAGTATGGGGGATAGCTTCAGCTTGTTGACGCAGCTTGAGGGGCATCAGAAGGTTGTTAGTGGGATTGCACTGCCTTCTGGGTCTGATAAGCTGTATACTGGGAGTAAGGATCAAACTGTAAGGGTTTGGGATTGCGCATCCGGTCAGTGCATGGGAGTTATTAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCTTGGATTTTTGTTGGCATACCAGAAGCTGTAAAGGCCTGGAACACCCAAACTAACTCGGAACTGAGTCTTAGTGGGCCTGTCGGACAAGTTTATGCCATGGTTGTGGGTAATGATTTGCTCTTTGCCGGTACACAGGATGGTTCTATATTGGCATGGAAGTTTAATGCTGTGACTAATTGCTTCGAACCAGCTGCATCACTGATAGGTCACACCCTTGCAGTTGTTTCATTAGTAGTTGGAGCAAATAGGCTCTACTCTGGTTCAATGGATAATTCTATAAGGGTCTGGAGCCTGGAAACTTTGCAGTGTATACAAACTCTAACAGAGCATACTGCAGTTGTCATGTCTGTTCTTTGCTGGGATCAGTTTCTCTTATCATGTTCCTTGGATCGACAATTAAAGGTCTGGGTTGCTACTCAAAGTGGAAACTTGGAAGCAACATATACTCACACGGAAGAAAATGGTTTGATTACACTTTGCGGGATGCATGATTCAGAAGCCAAGCCAGTCTTACTGTGCGCTTGCAATGACAACACTGTCCGTGTATATGATTTGCCATCGTTTTCGGAGAGGGGTAAAATTTTTTCAAAACAGGAGATAAGATCGATTCAGGTAGGCCCTGGTGGCTTGTTTTTCACGGGTGATGGAACCGGTCAAGTGAAAGTATGGAAATGGACTGAACCAGCTGCGGTCACCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

435

Amino Acids

47.1

Weight (kDa)

8.11

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_4 PF18044 111 - 131 1.1e-07 CCCH-type zinc finger
zf-CCCH PF00642 112 - 132 8.1e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 113 - 131 1.1e-07 Zinc finger domain
Beta-prop_WDR5 PF25175 132 - 186 1.3e-07 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 133 - 318 6.3e-22 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 141 - 185 1.6e-06 WDR3 first beta-propeller domain
WD40 PF00400 141 - 177 5.2e-07 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 154 - 342 1.9e-07 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 200 - 351 2.9e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 203 - 386 6.6e-20 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 206 - 428 3e-13 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 211 - 388 9.5e-16 WDR5 beta-propeller domain
WDR55 PF24796 238 - 386 3.5e-07 WDR55
Beta-prop_TEP1_2nd PF25047 238 - 355 6.7e-08 TEP-1 second beta-propeller
WD40_Prp19 PF24814 238 - 318 3.5e-06 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 262 - 385 2e-09 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 280 - 389 4.2e-07 MABP1/WDR62 second WD40 domain
WD40_Prp19 PF24814 283 - 430 2.7e-14 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 283 - 428 7.4e-15 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1139
Acc16I TGCGCA 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 151
AccI GTMKAC 3 cut(s) 9, 494, 913
AciI CCGC 6 cut(s) 101, 155, 267, 1083, 1292, 1299
AclWI GGATC 3 cut(s) 516, 972, 999
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 1182
AcuI CTGAAG 1 cut(s) 400
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 2 cut(s) 292, 733
AfiI CCNNNNNNNGG 3 cut(s) 97, 243, 244
AgeI ACCGGT 1 cut(s) 1253
AgsI TTSAA 5 cut(s) 37, 175, 262, 867, 1191
AjiI CACGTC 1 cut(s) 282
AjnI CCWGG 3 cut(s) 638, 894, 1222
AluBI AGCT 9 cut(s) 145, 366, 414, 420, 433, 490, 629, 794, 1289
AluI AGCT 9 cut(s) 145, 366, 414, 420, 433, 490, 629, 794, 1289
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 3 cut(s) 516, 972, 999
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 6 cut(s) 183, 213, 286, 636, 677, 1219
ApeKI GCWGC 6 cut(s) 52, 163, 363, 430, 794, 1289
ApoI RAATTY 1 cut(s) 1182
AseI ATTAAT 1 cut(s) 561
AsiGI ACCGGT 1 cut(s) 1253
AspLEI GCGC 4 cut(s) 154, 198, 536, 1124
AspS9I GGNCC 6 cut(s) 227, 248, 286, 599, 677, 1220
AsuC2I CCSGG 2 cut(s) 149, 238
AsuHPI GGTGA 3 cut(s) 584, 1256, 1288
AsuII TTCGAA 1 cut(s) 786
AvaII GGWCC 3 cut(s) 227, 248, 599
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 147
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 6 cut(s) 64, 175, 375, 442, 781, 1276
BccI CCATC 7 cut(s) 207, 218, 238, 319, 734, 1168, 1241
BceAI ACGGC 4 cut(s) 142, 198, 228, 273
BcgI CGANNNNNNTGC 2 cut(s) 776, 810
BciT130I CCWGG 3 cut(s) 640, 896, 1224
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 2 cut(s) 149, 238
BfmI CTRYAG 1 cut(s) 936
BfoI RGCGCY 2 cut(s) 155, 199
BglI GCCNNNNNGGC 2 cut(s) 212, 1227
BisI GCNGC 7 cut(s) 53, 155, 164, 364, 431, 795, 1290
BlsI GCNGC 7 cut(s) 54, 156, 165, 365, 432, 796, 1291
Bme1390I CCNGG 5 cut(s) 149, 238, 640, 896, 1224
Bme18I GGWCC 3 cut(s) 227, 248, 599
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 6 cut(s) 227, 248, 286, 599, 677, 1220
BmiI GGNNCC 5 cut(s) 153, 249, 287, 893, 1252
BmrFI CCNGG 5 cut(s) 149, 238, 640, 896, 1224
BmrI ACTGGG 2 cut(s) 53, 507
BmsI GCATC 4 cut(s) 451, 545, 806, 1077
BmuI ACTGGG 2 cut(s) 53, 507
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 910
Bpu14I TTCGAA 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 2 cut(s) 149, 238
Bsa29I ATCGAT 1 cut(s) 1208
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 602, 699, 987, 1222
BsaWI WCCGGW 2 cut(s) 539, 1253
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 243, 244
Bse118I RCCGGY 2 cut(s) 728, 1253
Bse1I ACTGG 3 cut(s) 48, 502, 1109
Bse3DI GCAATG 1 cut(s) 1135
BseBI CCWGG 3 cut(s) 640, 896, 1224
BseCI ATCGAT 1 cut(s) 1208
BseDI CCNNGG 4 cut(s) 602, 699, 987, 1222
BseGI GGATG 4 cut(s) 10, 536, 745, 1092
BseLI CCNNNNNNNGG 3 cut(s) 97, 243, 244
BseMI GCAATG 1 cut(s) 1135
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 3 cut(s) 48, 502, 1109
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 6 cut(s) 64, 175, 375, 442, 781, 1276
BseYI CCCAGC 1 cut(s) 960
BshFI GGCC 6 cut(s) 185, 215, 288, 638, 679, 1221
BshNI GGYRCC 1 cut(s) 151
BshTI ACCGGT 1 cut(s) 1253
BshVI ATCGAT 1 cut(s) 1208
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 5 cut(s) 149, 238, 540, 729, 1254
BslFI GGGAC 3 cut(s) 193, 220, 386
BslI CCNNNNNNNGG 3 cut(s) 97, 243, 244
BsmFI GGGAC 3 cut(s) 193, 220, 386
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 6 cut(s) 185, 215, 288, 638, 679, 1221
Bsp119I TTCGAA 1 cut(s) 786
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 5 cut(s) 508, 588, 964, 991, 1205
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 6 cut(s) 101, 155, 267, 1083, 1292, 1299
BspANI GGCC 6 cut(s) 185, 215, 288, 638, 679, 1221
BspCNI CTCAG 1 cut(s) 657
BspDI ATCGAT 1 cut(s) 1208
BspLI GGNNCC 5 cut(s) 153, 249, 287, 893, 1252
BspMAI CTGCAG 1 cut(s) 940
BspPI GGATC 3 cut(s) 516, 972, 999
BspT104I TTCGAA 1 cut(s) 786
BspT107I GGYRCC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 1135
BsrFI RCCGGY 2 cut(s) 728, 1253
BsrI ACTGG 3 cut(s) 48, 502, 1109
BssAI RCCGGY 2 cut(s) 728, 1253
BssECI CCNNGG 4 cut(s) 602, 699, 987, 1222
BssMI GATC 5 cut(s) 508, 588, 964, 991, 1205
BssNAI GTATAC 2 cut(s) 495, 914
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 3 cut(s) 602, 699, 987
Bst1107I GTATAC 2 cut(s) 495, 914
Bst2UI CCWGG 3 cut(s) 640, 896, 1224
Bst4CI ACNGT 3 cut(s) 517, 1119, 1141
BstACI GRCGYC 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 786
BstC8I GCNNGC 2 cut(s) 103, 1126
BstDEI CTNAG 3 cut(s) 192, 665, 671
BstDSI CCRYGG 1 cut(s) 699
BstEII GGTNACC 1 cut(s) 1294
BstF5I GGATG 4 cut(s) 10, 536, 745, 1092
BstH2I RGCGCY 2 cut(s) 155, 199
BstHHI GCGC 4 cut(s) 154, 198, 536, 1124
BstKTI GATC 5 cut(s) 511, 591, 967, 994, 1208
BstMBI GATC 5 cut(s) 508, 588, 964, 991, 1205
BstMWI GCNNNNNNNGC 9 cut(s) 123, 151, 160, 163, 212, 439, 635, 1227, 1298
BstNI CCWGG 3 cut(s) 640, 896, 1224
BstPI GGTNACC 1 cut(s) 1294
BstSCI CCNGG 5 cut(s) 147, 236, 638, 894, 1222
BstSFI CTRYAG 1 cut(s) 936
BstV1I GCAGC 6 cut(s) 64, 175, 375, 442, 781, 1276
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 706
BstZ17I GTATAC 2 cut(s) 495, 914
Bsu15I ATCGAT 1 cut(s) 1208
BsuRI GGCC 6 cut(s) 185, 215, 288, 638, 679, 1221
BsuTUI ATCGAT 1 cut(s) 1208
BtgI CCRYGG 1 cut(s) 699
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 4 cut(s) 10, 536, 745, 1092
BtsI GCAGTG 2 cut(s) 467, 914
BtsIMutI CAGTG 6 cut(s) 467, 551, 598, 800, 914, 1137
Cac8I GCNNGC 2 cut(s) 103, 1126
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 4 cut(s) 154, 198, 536, 1124
Cfr10I RCCGGY 2 cut(s) 728, 1253
Cfr13I GGNCC 6 cut(s) 227, 248, 286, 599, 677, 1220
ClaI ATCGAT 1 cut(s) 1208
CseI GACGC 1 cut(s) 436
Csp6I GTAC 2 cut(s) 291, 732
CspAI ACCGGT 1 cut(s) 1253
CviAII CATG 6 cut(s) 550, 700, 756, 946, 981, 1091
CviQI GTAC 2 cut(s) 291, 732
DdeI CTNAG 3 cut(s) 192, 665, 671
DinI GGCGCC 1 cut(s) 153
DpnI GATC 5 cut(s) 510, 590, 966, 993, 1207
DpnII GATC 5 cut(s) 508, 588, 964, 991, 1205
DrdI GACNNNNNNGTC 1 cut(s) 1139
DseDI GACNNNNNNGTC 1 cut(s) 1139
EaeI YGGCCR 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 3 cut(s) 602, 699, 987
Eco147I AGGCCT 1 cut(s) 638
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 3 cut(s) 227, 248, 599
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 400
Eco91I GGTNACC 1 cut(s) 1294
EcoICRI GAGCTC 1 cut(s) 145
EcoO109I RGGNCCY 2 cut(s) 599, 1220
EcoO65I GGTNACC 1 cut(s) 1294
EcoRII CCWGG 3 cut(s) 638, 894, 1222
EcoT14I CCWWGG 3 cut(s) 602, 699, 987
EcoT22I ATGCAT 1 cut(s) 1092
EcoT38I GRGCYC 1 cut(s) 147
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
ErhI CCWWGG 3 cut(s) 602, 699, 987
FaeI CATG 6 cut(s) 553, 703, 759, 949, 984, 1094
FalI AAGNNNNNCTT 2 cut(s) 1097, 1129
FaqI GGGAC 3 cut(s) 193, 220, 386
FatI CATG 6 cut(s) 549, 699, 755, 945, 980, 1090
FauI CCCGC 3 cut(s) 94, 260, 1076
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 3 cut(s) 9, 494, 913
Fnu4HI GCNGC 7 cut(s) 53, 155, 164, 364, 431, 795, 1290
FokI GGATG 4 cut(s) 17, 523, 752, 1099
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 7 cut(s) 53, 155, 164, 364, 431, 795, 1290
FspI TGCGCA 1 cut(s) 535
GlaI GCGC 4 cut(s) 153, 197, 535, 1123
GluI GCNGC 7 cut(s) 53, 155, 164, 364, 431, 795, 1290
GsaI CCCAGC 1 cut(s) 964
GsuI CTGGAG 1 cut(s) 910
HaeII RGCGCY 2 cut(s) 155, 199
HaeIII GGCC 6 cut(s) 185, 215, 288, 638, 679, 1221
HapII CCGG 5 cut(s) 149, 238, 540, 729, 1254
HgaI GACGC 1 cut(s) 436
HhaI GCGC 4 cut(s) 154, 198, 536, 1124
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 6 cut(s) 553, 703, 759, 949, 984, 1094
Hin6I GCGC 4 cut(s) 152, 196, 534, 1122
HinP1I GCGC 4 cut(s) 152, 196, 534, 1122
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 4 cut(s) 241, 667, 1094, 1210
HpaII CCGG 5 cut(s) 149, 238, 540, 729, 1254
HphI GGTGA 3 cut(s) 584, 1256, 1288
Hpy166II GTNNAC 5 cut(s) 10, 426, 495, 734, 914
Hpy188I TCNGA 7 cut(s) 61, 447, 484, 661, 686, 1099, 1171
Hpy188III TCNNGA 1 cut(s) 889
Hpy8I GTNNAC 5 cut(s) 10, 426, 495, 734, 914
Hpy99I CGWCG 2 cut(s) 163, 283
HpyAV CCTTC 5 cut(s) 73, 217, 442, 483, 590
HpyCH4III ACNGT 3 cut(s) 517, 1119, 1141
HpyCH4IV ACGT 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 9 cut(s) 123, 151, 160, 163, 212, 439, 635, 1227, 1298
HpyF3I CTNAG 3 cut(s) 192, 665, 671
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 6 cut(s) 553, 703, 759, 949, 984, 1094
HspAI GCGC 4 cut(s) 152, 196, 534, 1122
KasI GGCGCC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 5 cut(s) 508, 588, 964, 991, 1205
LmnI GCTCC 4 cut(s) 150, 299, 842, 891
Lsp1109I GCAGC 6 cut(s) 64, 175, 375, 442, 781, 1276
LweI GCATC 4 cut(s) 451, 545, 806, 1077
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 3 cut(s) 772, 809, 1294
MalI GATC 5 cut(s) 510, 590, 966, 993, 1207
MboI GATC 5 cut(s) 508, 588, 964, 991, 1205
MboII GAAGA 4 cut(s) 25, 267, 334, 1070
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 6 cut(s) 340, 358, 778, 874, 998, 1182
Mly113I GGCGCC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 3 cut(s) 84, 664, 820
MnlI CCTC 6 cut(s) 8, 90, 196, 290, 430, 1167
Mph1103I ATGCAT 1 cut(s) 1092
MseI TTAA 3 cut(s) 561, 765, 1001
MslI CAYNNNNRTG 1 cut(s) 704
MspA1I CMGCKG 2 cut(s) 794, 1289
MspI CCGG 5 cut(s) 149, 238, 540, 729, 1254
MspR9I CCNGG 5 cut(s) 149, 238, 640, 896, 1224
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 3 cut(s) 640, 896, 1224
MwoI GCNNNNNNNGC 9 cut(s) 123, 151, 160, 163, 212, 439, 635, 1227, 1298
NarI GGCGCC 1 cut(s) 152
NciI CCSGG 2 cut(s) 149, 238
NcoI CCATGG 1 cut(s) 699
NdeII GATC 5 cut(s) 508, 588, 964, 991, 1205
NlaIII CATG 6 cut(s) 553, 703, 759, 949, 984, 1094
NlaIV GGNNCC 5 cut(s) 153, 249, 287, 893, 1252
NmuCI GTSAC 3 cut(s) 772, 809, 1294
NsbI TGCGCA 1 cut(s) 535
NsiI ATGCAT 1 cut(s) 1092
NspV TTCGAA 1 cut(s) 786
PceI AGGCCT 1 cut(s) 638
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 3 cut(s) 241, 1094, 1210
PfoI TCCNGGA 1 cut(s) 236
PinAI ACCGGT 1 cut(s) 1253
PkrI GCNGC 7 cut(s) 54, 156, 165, 365, 432, 796, 1291
PleI GAGTC 1 cut(s) 675
PluTI GGCGCC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 675
PpuMI RGGWCCY 1 cut(s) 599
PshBI ATTAAT 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 3 cut(s) 638, 894, 1222
PspEI GGTNACC 1 cut(s) 1294
PspFI CCCAGC 1 cut(s) 960
PspGI CCWGG 3 cut(s) 638, 894, 1222
PspN4I GGNNCC 5 cut(s) 153, 249, 287, 893, 1252
PspPI GGNCC 6 cut(s) 227, 248, 286, 599, 677, 1220
PspPPI RGGWCCY 1 cut(s) 599
PstI CTGCAG 1 cut(s) 940
PstNI CAGNNNCTG 1 cut(s) 629
PvuII CAGCTG 2 cut(s) 794, 1289
RsaI GTAC 2 cut(s) 292, 733
RsaNI GTAC 2 cut(s) 291, 732
RseI CAYNNNNRTG 1 cut(s) 704
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 3 cut(s) 561, 765, 1001
SatI GCNGC 7 cut(s) 53, 155, 164, 364, 431, 795, 1290
Sau3AI GATC 5 cut(s) 508, 588, 964, 991, 1205
Sau96I GGNCC 6 cut(s) 227, 248, 286, 599, 677, 1220
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 5 cut(s) 149, 238, 640, 896, 1224
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 4 cut(s) 451, 545, 806, 1077
SfcI CTRYAG 1 cut(s) 936
SfoI GGCGCC 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 786
SinI GGWCC 3 cut(s) 227, 248, 599
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 6 cut(s) 340, 358, 778, 874, 998, 1182
SseBI AGGCCT 1 cut(s) 638
SsiI CCGC 6 cut(s) 101, 155, 267, 1083, 1292, 1299
SspDI GGCGCC 1 cut(s) 151
SstI GAGCTC 1 cut(s) 147
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 5 cut(s) 147, 236, 638, 894, 1222
StyI CCWWGG 3 cut(s) 602, 699, 987
TaaI ACNGT 3 cut(s) 517, 1119, 1141
TaiI ACGT 1 cut(s) 284
TaqI TCGA 5 cut(s) 188, 278, 786, 994, 1208
TasI AATT 6 cut(s) 340, 358, 778, 874, 998, 1182
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 3 cut(s) 241, 1094, 1210
Tru1I TTAA 3 cut(s) 561, 765, 1001
Tru9I TTAA 3 cut(s) 561, 765, 1001
TscAI CASTG 6 cut(s) 474, 551, 598, 807, 914, 1144
TseFI GTSAC 3 cut(s) 772, 809, 1294
TseI GCWGC 6 cut(s) 52, 163, 363, 430, 794, 1289
Tsp45I GTSAC 3 cut(s) 772, 809, 1294
TspDTI ATGAA 1 cut(s) 819
TspGWI ACGGA 3 cut(s) 27, 1070, 1133
TspRI CASTG 6 cut(s) 474, 551, 598, 807, 914, 1144
VpaK11BI GGWCC 3 cut(s) 227, 248, 599
VspI ATTAAT 1 cut(s) 561
XapI RAATTY 1 cut(s) 1182
XmiI GTMKAC 3 cut(s) 9, 494, 913
Zsp2I ATGCAT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.