RchiOBHm_Chr3g0483061

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000488
Physical Location & Seq
Forward (+)
29156317 .. 29156826
510 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44787

Sequence Viewer

Length: 405 bp
ATGAAATTTGATAAGGAAATGCTTTTTGCTGGGACTGACAAAGGTGTTATTTTGGTGTGGAAAGCTAAAGGTCCATTTGAACTTGTTGCATCTCTCACTGGCCATACTGCGATTGTGGTTTGTTTAAGAATTGGATCTTCAGCCACTAAGTTGTACTCAGGTTTAGTAGACCATACAATAAAGAACTGCACGATAAAGGTGTGGCACATCACTGAAGCGGGCAAATTCAATTTGGAGGTGATCTACACTCACGATGTTGAACATGGCATTGTTGCTCTATTCGTGATGTATGATGCAGAAGTTAAACCGGTCCTGTTTTGTTCTTCTACTGACAATTCTATCCGCTTATATGATCTGCCATCGTTCAATAAGAGGGCCATATTATTTGGAAAGCAAGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04114 ko04120 ko04218 ko04310 ko04340 ko04341 ko04390 ko04624 ko04710 ko05131 map03040 map04114 map04120 map04218 map04310 map04340 map04341 map04390 map04624 map04710 map05131
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

134

Amino Acids

14.95

Weight (kDa)

7.74

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_1st PF25173 4 - 129 5e-09 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 4 - 128 4.2e-08 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AciI CCGC 2 cut(s) 218, 343
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 2 cut(s) 5, 224
AcuI CTGAAG 2 cut(s) 123, 234
AfaI GTAC 1 cut(s) 155
AgeI ACCGGT 1 cut(s) 307
AgsI TTSAA 4 cut(s) 80, 229, 260, 367
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AlwI GGATC 1 cut(s) 142
AoxI GGCC 2 cut(s) 100, 375
ApoI RAATTY 2 cut(s) 5, 224
AsiGI ACCGGT 1 cut(s) 307
AspS9I GGNCC 3 cut(s) 71, 310, 375
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 2 cut(s) 71, 310
BalI TGGCCA 1 cut(s) 102
BccI CCATC 1 cut(s) 367
Bme18I GGWCC 2 cut(s) 71, 310
BmgT120I GGNCC 3 cut(s) 71, 310, 375
BmsI GCATC 2 cut(s) 98, 283
BsaWI WCCGGW 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 2 cut(s) 102, 377
BshTI ACCGGT 1 cut(s) 307
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 102, 377
Bsp143I GATC 3 cut(s) 134, 240, 352
BspACI CCGC 2 cut(s) 218, 343
BspANI GGCC 2 cut(s) 102, 377
BspCNI CTCAG 1 cut(s) 170
BspPI GGATC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 307
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 307
BssMI GATC 3 cut(s) 134, 240, 352
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 147, 157
BstKTI GATC 3 cut(s) 137, 243, 355
BstMBI GATC 3 cut(s) 134, 240, 352
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuRI GGCC 2 cut(s) 102, 377
BtsIMutI CAGTG 2 cut(s) 96, 210
Cac8I GCNNGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 71, 310, 375
Csp6I GTAC 1 cut(s) 154
CspAI ACCGGT 1 cut(s) 307
CviAII CATG 1 cut(s) 263
CviJI RGCY 4 cut(s) 65, 102, 143, 377
CviKI_1 RGCY 4 cut(s) 65, 102, 143, 377
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 147, 157
DpnI GATC 3 cut(s) 136, 242, 354
DpnII GATC 3 cut(s) 134, 240, 352
EaeI YGGCCR 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 71, 310
Eco57I CTGAAG 2 cut(s) 123, 234
FaeI CATG 1 cut(s) 266
FaiI YATR 7 cut(s) 105, 174, 264, 291, 349, 351, 380
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 211
FblI GTMKAC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 102, 377
HapII CCGG 1 cut(s) 308
Hin1II CATG 1 cut(s) 266
HpaII CCGG 1 cut(s) 308
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 251, 283
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 89, 189, 296
HpyF3I CTNAG 2 cut(s) 147, 157
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 3 cut(s) 134, 240, 352
LpnPI CCDG 5 cut(s) 15, 84, 144, 321, 326
LweI GCATC 2 cut(s) 98, 283
MalI GATC 3 cut(s) 136, 242, 354
MboI GATC 3 cut(s) 134, 240, 352
MboII GAAGA 2 cut(s) 129, 315
MflI RGATCY 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 5 cut(s) 5, 129, 224, 229, 334
MluNI TGGCCA 1 cut(s) 102
MnlI CCTC 2 cut(s) 229, 366
Mox20I TGGCCA 1 cut(s) 102
MscI TGGCCA 1 cut(s) 102
MseI TTAA 2 cut(s) 125, 303
Msp20I TGGCCA 1 cut(s) 102
MspI CCGG 1 cut(s) 308
NdeII GATC 3 cut(s) 134, 240, 352
NlaIII CATG 1 cut(s) 266
PinAI ACCGGT 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 29
PspPI GGNCC 3 cut(s) 71, 310, 375
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 125, 303
Sau3AI GATC 3 cut(s) 134, 240, 352
Sau96I GGNCC 3 cut(s) 71, 310, 375
SetI ASST 6 cut(s) 46, 67, 73, 163, 201, 240
SfaNI GCATC 2 cut(s) 98, 283
SinI GGWCC 2 cut(s) 71, 310
Sse9I AATT 5 cut(s) 5, 129, 224, 229, 334
SsiI CCGC 2 cut(s) 218, 343
TasI AATT 5 cut(s) 5, 129, 224, 229, 334
TatI WGTACW 1 cut(s) 153
Tru1I TTAA 2 cut(s) 125, 303
Tru9I TTAA 2 cut(s) 125, 303
TscAI CASTG 2 cut(s) 103, 217
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 103, 217
VpaK11BI GGWCC 2 cut(s) 71, 310
XapI RAATTY 2 cut(s) 5, 224
XmiI GTMKAC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.