Rmu_co8110388.1_g000001

Zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8110388.1
OG0000488
Physical Location & Seq
Forward (+)
10 .. 402
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8110388.1_g000001.1.cds

Sequence Viewer

Length: 393 bp
atgactctaaatggacattctgatgctgtgacgtctcttatttgttggaccacatttctgatctcatgctcattagaccacacgataaaggtgtggactatgtgtaaaggaggcaacattgaagaaatctacactcacactgaagaagacggtcttcttgctctctctggaatgcatgatgctgaagacaaaccagtcctactttgctcatcaaaagacaattctgtccgcatatatgatttgccatcctttgatgagaggggaagattatttgcaaaacgggaagttcgggctattcaagttggccctggaggactattctttactggggatgaaactggtggactctccgtgtggaagtggttgcaacctgcagtcaaacaagagtcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
WD40 zf-CCCH

Protein Analysis

130

Amino Acids

14.42

Weight (kDa)

5.09

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25440 AT4G25440 AT4G25440 AT5G51980 AT5G51980
fragaria_vesca FvH4_2g11580 FvH4_3g29280 FvH4_4g05980 FvH4_7g28880 FvH4_7g28880
malus_domestica MD01G1195600.v1.1 MD02G1195200.v1.1 MD07G1262400.v1.1
prunus_persica Prupe.2G102200_v2.0.a1 Prupe.2G102200_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G120800_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153300_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G153400_v2.0.a1 Prupe.2G288900_v2.0.a1
pyrus_communis pycom01g20620 pycom02g15900 pycom07g24140
rosa_chinensis RchiOBHm_Chr1g0376561 RchiOBHm_Chr3g0483051 RchiOBHm_Chr3g0483061 RchiOBHm_Chr3g0483601 RchiOBHm_Chr3g0483611 RchiOBHm_Chr4g0402321 RchiOBHm_Chr6g0270771
rosa_laevigata RLG00000009464 RLG00000009486 RLG00000013770 RLG00000023264 RLG00000023325 RLG00000026601 RLG00000035049
rosa_multiflora Rmu_co8110388.1_g000001 Rmu_co8419409.1_g000001 Rmu_sc0000555.1_g000012 Rmu_sc0000642.1_g000020 Rmu_sc0001308.1_g000010 Rmu_sc0002963.1_g000021 Rmu_sc0004788.1_g000012 Rmu_sc0005594.1_g000015 Rmu_sc0022770.1_g000001
rosa_roxburghii Rroxscaffold_4G00282000 Rroxscaffold_5G00341940 Rroxscaffold_5G00341950 Rroxscaffold_6G00398950 Rroxscaffold_7G00197610
rosa_rugosa Rorug01G0396500 Rorug03G0207400 Rorug03G0346000 Rorug04G0166800 Rorug06G0056400 Rorug06G0056500
rosa_samantha Rh1AG412700 Rh1BG372400 Rh1BG372600 Rh1CG386200 Rh1CG386500 Rh1DG403300 Rh1DG403500 Rh3AG255500 Rh3AG255600 Rh3BG292600 Rh3CG290200 Rh3DG278800 Rh3DG286100 Rh4AG075500 Rh4AG111600 Rh4BG071900 Rh4BG072100 Rh4BG231300 Rh4CG080200 Rh4CG080300 Rh4DG069300 Rh4DG069500 Rh6AG175700 Rh6BG178900 Rh6CG175200 Rh6DG167500
rosa_wichuraiana Rw1G036190 Rw3G023110 Rw4G006070 Rw6G014960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 194, 224
AatII GACGTC 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 379
AciI CCGC 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 162, 204
AcyI GRCGYC 1 cut(s) 32
AgsI TTSAA 2 cut(s) 122, 299
AjnI CCWGG 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 39
AoxI GGCC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 48, 305
AvaII GGWCC 1 cut(s) 48
BbsI GAAGAC 3 cut(s) 146, 153, 192
BccI CCATC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 48, 305
BmrFI CCNGG 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 13, 169
BmuI ACTGGG 1 cut(s) 336
BpiI GAAGAC 3 cut(s) 146, 153, 192
BpmI CTGGAG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 307
Bse1I ACTGG 3 cut(s) 194, 331, 343
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 2 cut(s) 245, 337
BseNI ACTGG 3 cut(s) 194, 331, 343
BshFI GGCC 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 1 cut(s) 379
BsrI ACTGG 3 cut(s) 194, 331, 343
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 32
BstF5I GGATG 2 cut(s) 245, 337
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 372
BstV2I GAAGAC 3 cut(s) 146, 153, 192
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 2 cut(s) 245, 337
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 48, 305
CviAII CATG 2 cut(s) 66, 176
CviJI RGCY 2 cut(s) 293, 306
CviKI_1 RGCY 2 cut(s) 293, 306
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DrdI GACNNNNNNGTC 2 cut(s) 194, 224
DseDI GACNNNNNNGTC 2 cut(s) 194, 224
Eco47I GGWCC 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 162, 204
EcoRII CCWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 2 cut(s) 69, 179
FaiI YATR 6 cut(s) 67, 101, 177, 233, 235, 237
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 2 cut(s) 65, 175
FokI GGATG 2 cut(s) 232, 344
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 69, 179
HinfI GANTC 3 cut(s) 4, 345, 386
Hpy166II GTNNAC 2 cut(s) 96, 344
Hpy188I TCNGA 2 cut(s) 22, 60
Hpy188III TCNNGA 2 cut(s) 168, 390
Hpy8I GTNNAC 2 cut(s) 96, 344
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 175, 275, 367, 374
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 69, 179
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 7 cut(s) 153, 207, 294, 312, 321, 324, 384
LweI GCATC 2 cut(s) 13, 169
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 6 cut(s) 134, 146, 155, 158, 197, 276
MluCI AATT 1 cut(s) 220
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 3 cut(s) 104, 252, 305
Mph1103I ATGCAT 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 1 cut(s) 309
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 69, 179
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 177
PctI GAATGC 1 cut(s) 177
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspPI GGNCC 2 cut(s) 48, 305
PstI CTGCAG 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 21
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 48, 305
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 309
SetI ASST 3 cut(s) 35, 93, 373
SfaNI GCATC 2 cut(s) 13, 169
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 220
SsiI CCGC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 35
TasI AATT 1 cut(s) 220
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 48
ZraI GACGTC 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.