AT5G01580
ERF Family

Gamma interferon inducible lysosomal thiol reductase (GILT)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001585
Physical Location & Seq
Reverse (-)
222760 .. 223852
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01580.1

Sequence Viewer

Length: 702 bp
ATGGCATCATATCAGAGGCTTTGCATCACAAGTTGCACAATCTTCTTCTGCCTCTTATCTCTGTCTTCAAGCCAGAAAGTTACACTAAGTTTATACTACGAAGCTCTATGCCCCTTCTGTGCAGAATTCATCGTCAACCGCTTGCCTAAGATCTTCGAAACCGGCTTAATCTCATCCATTGATCTCCAGCTCGTTCCATGGGGCAACGCCGCTATCAGACCAGATGGAACCATTCTCTGCCAGCACGGAGAAGCTGAGTGTGCGCTCAACGCAATTCATGCCTGTGCAATAAACGCATACCCTGATGTGATGAAGCATTTTGGATACATCTACTGTACGGAACAGCTAGTCTTGGAGAACAAACTTGAAAAATGGGCTGATTGTTTAGAAATGGTTGGATTGAGCAGAGCAGCGGTTGATTGTTACATTAACGGATACGGAAACCAGCTTGAACAGAGGTATGCTGAAGAAACTTCTGAACTTTATCCAGCACATAGATTTGTACCATGGGTGGTTGTGAATAACCTACCACTTCAAGAGAACTACCAGAACTTTGTCATGTATGTATGCAATGCTTATGGAAGTAACCAAGTACCAGAAGCGTGCAGGATCCTCAACAGTTCGGTGGAGACACTAAGCAGGTCCAATAGTTCAGTGGAGAAGCTAAGTAACAGTCCCCAAGTTTGCTATTCCAATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

233

Amino Acids

26.22

Weight (kDa)

5.09

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 29 - 131 6.8e-29 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 630
AciI CCGC 3 cut(s) 139, 210, 413
AclWI GGATC 2 cut(s) 604, 617
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 3 cut(s) 337, 504, 594
AgsI TTSAA 4 cut(s) 69, 368, 452, 536
AluBI AGCT 6 cut(s) 104, 190, 254, 346, 448, 664
AluI AGCT 6 cut(s) 104, 190, 254, 346, 448, 664
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 2 cut(s) 604, 617
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 642
AsuII TTCGAA 1 cut(s) 156
AvaII GGWCC 1 cut(s) 642
BamHI GGATCC 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 422
BccI CCATC 1 cut(s) 218
BciVI GTATCC 2 cut(s) 317, 428
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 630
BfuI GTATCC 2 cut(s) 317, 428
BglII AGATCT 1 cut(s) 150
BisI GCNGC 2 cut(s) 210, 411
BlsI GCNGC 2 cut(s) 211, 412
Bme18I GGWCC 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 642
BmiI GGNNCC 2 cut(s) 229, 611
BmsI GCATC 2 cut(s) 14, 33
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 197, 506
Bse118I RCCGGY 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 577
BseDI CCNNGG 2 cut(s) 197, 506
BseGI GGATG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 422
BsgI GTGCAG 2 cut(s) 141, 625
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 660
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 660
Bsp119I TTCGAA 1 cut(s) 156
Bsp143I GATC 3 cut(s) 150, 181, 609
Bsp19I CCATGG 2 cut(s) 197, 506
BspACI CCGC 3 cut(s) 139, 210, 413
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 229, 611
BspMI ACCTGC 1 cut(s) 630
BspPI GGATC 2 cut(s) 604, 617
BspT104I TTCGAA 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 577
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 197, 506
BssMI GATC 3 cut(s) 150, 181, 609
BssT1I CCWWGG 2 cut(s) 197, 506
Bst4CI ACNGT 3 cut(s) 335, 620, 674
BstAPI GCANNNNNTGC 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 143, 242, 604
BstDEI CTNAG 5 cut(s) 86, 147, 255, 635, 665
BstDSI CCRYGG 2 cut(s) 197, 506
BstF5I GGATG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 3 cut(s) 153, 184, 612
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 3 cut(s) 150, 181, 609
BstMWI GCNNNNNNNGC 4 cut(s) 260, 269, 278, 293
BstV1I GCAGC 1 cut(s) 422
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 150, 609
BstYI RGATCY 2 cut(s) 150, 609
BsuI GTATCC 2 cut(s) 317, 428
BtgI CCRYGG 2 cut(s) 197, 506
BtsCI GGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 660
BveI ACCTGC 1 cut(s) 630
Cac8I GCNNGC 3 cut(s) 143, 242, 604
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 642
Csp6I GTAC 3 cut(s) 336, 503, 593
CviAII CATG 4 cut(s) 198, 278, 507, 559
CviQI GTAC 3 cut(s) 336, 503, 593
DdeI CTNAG 5 cut(s) 86, 147, 255, 635, 665
DpnI GATC 3 cut(s) 152, 183, 611
DpnII GATC 3 cut(s) 150, 181, 609
Eco130I CCWWGG 2 cut(s) 197, 506
Eco47I GGWCC 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 197, 506
ErhI CCWWGG 2 cut(s) 197, 506
FaeI CATG 4 cut(s) 201, 281, 510, 562
FaqI GGGAC 1 cut(s) 660
FatI CATG 4 cut(s) 197, 277, 506, 558
Fnu4HI GCNGC 2 cut(s) 210, 411
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 210, 411
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 264
GluI GCNGC 2 cut(s) 210, 411
GsuI CTGGAG 1 cut(s) 170
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 265
Hin1II CATG 4 cut(s) 201, 281, 510, 562
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 15, 218, 478
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 335, 620, 674
HpyCH4V TGCA 6 cut(s) 24, 36, 122, 287, 570, 606
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 269, 278, 293
HpyF3I CTNAG 5 cut(s) 86, 147, 255, 635, 665
Hsp92II CATG 4 cut(s) 201, 281, 510, 562
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 3 cut(s) 150, 181, 609
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 2 cut(s) 14, 33
MaeI CTAG 1 cut(s) 347
MaeIII GTNAC 4 cut(s) 79, 422, 584, 668
MalI GATC 3 cut(s) 152, 183, 611
MboI GATC 3 cut(s) 150, 181, 609
MboII GAAGA 5 cut(s) 34, 37, 57, 145, 479
MflI RGATCY 2 cut(s) 150, 609
MluCI AATT 2 cut(s) 125, 273
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 4 cut(s) 9, 62, 450, 623
MseI TTAA 2 cut(s) 167, 429
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 1 cut(s) 162
MwoI GCNNNNNNNGC 4 cut(s) 260, 269, 278, 293
NcoI CCATGG 2 cut(s) 197, 506
NdeII GATC 3 cut(s) 150, 181, 609
NlaIII CATG 4 cut(s) 201, 281, 510, 562
NlaIV GGNNCC 2 cut(s) 229, 611
NspV TTCGAA 1 cut(s) 156
PkrI GCNGC 2 cut(s) 211, 412
PspN4I GGNNCC 2 cut(s) 229, 611
PspPI GGNCC 1 cut(s) 642
PsuI RGATCY 2 cut(s) 150, 609
RsaI GTAC 3 cut(s) 337, 504, 594
RsaNI GTAC 3 cut(s) 336, 503, 593
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 2 cut(s) 167, 429
SatI GCNGC 2 cut(s) 210, 411
Sau3AI GATC 3 cut(s) 150, 181, 609
Sau96I GGNCC 1 cut(s) 642
SetI ASST 9 cut(s) 106, 192, 256, 348, 450, 461, 528, 644, 666
SfaNI GCATC 2 cut(s) 14, 33
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 2 cut(s) 125, 273
SsiI CCGC 3 cut(s) 139, 210, 413
SspMI CTAG 1 cut(s) 347
StyI CCWWGG 2 cut(s) 197, 506
TaaI ACNGT 3 cut(s) 335, 620, 674
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 125, 273
TauI GCSGC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 167, 429
Tru9I TTAA 2 cut(s) 167, 429
TscAI CASTG 1 cut(s) 660
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 118, 266, 326
TspGWI ACGGA 4 cut(s) 261, 353, 447, 453
TspRI CASTG 1 cut(s) 660
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 1 cut(s) 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.