Rw7G026550
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001585
Physical Location & Seq
Forward (+)
33779040 .. 33781023
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026550.1

Sequence Viewer

Length: 693 bp
ATGGGTTTTGCCAGACCCTTCCTCTTCTACCTCCTTTTGGTCTTAAACCCATCTCAATCTTATGCTGCTGAGAATGTGAGTGTGACTCTCTACTACGAGACTCTGTGTCCTTATTGTGCCGATTTCATAGTGAACCATTTGGCCAAGATCTTCCAGAATGGGCTCATCTCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCCGACGGCTCCTTCGCCTGCCAGCATGGAACAGATGAATGCTTGCTCAACACAATTGAGGCCTGCACCATCACCATCTATCCTAATGTGAATCGGCATTTTACATTCATCGACTGCGTTGAGAGGCTCACGTTGCAGAACAAACACAGTAAATGGGCCGATTGCTTTGAAATGTCGAAGTTGGGGACTGTACCTATCGATTGCTACAACAGTGGATATGGCAATCGGATTGAAACAAAATATGCAAAGGAAACTGCTCAGCTTAATCCACCACATAGATTTGTGCCGTGGCTGGTTGTCAATAATAAACCACTTGCAGAGGACTACGGAAATTTTATGGCCTATATCTGTAAGGCATACAAAGGAAAATCTCCAGAAGCTTGCAGATCCATTCACTACAAGACTGATTCAATTGGAAATGAAAAATCGATTCCTCAAGTTTGCCTAGCAGAACAACGAAGAAACTCTACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

230

Amino Acids

26.15

Weight (kDa)

7.51

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 28 - 129 9.7e-32 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 597
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 547
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 3 cut(s) 386, 449, 627
AhdI GACNNNNNGTC 1 cut(s) 105
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 2 cut(s) 478, 596
AluI AGCT 2 cut(s) 478, 596
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 597
AoxI GGCC 4 cut(s) 141, 276, 372, 555
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 547
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspS9I GGNCC 2 cut(s) 190, 372
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 190
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 165
BarI GAAGNNNNNNTAC 1 cut(s) 667
BbvI GCAGC 1 cut(s) 52
BccI CCATC 4 cut(s) 58, 179, 293, 299
BceAI ACGGC 2 cut(s) 238, 487
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 662
BglII AGATCT 1 cut(s) 147
BisI GCNGC 1 cut(s) 66
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 190
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 190, 372
BmiI GGNNCC 2 cut(s) 192, 226
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpmI CTGGAG 1 cut(s) 573
Bpu1102I GCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 636
Bsa29I ATCGAT 2 cut(s) 414, 644
BsaJI CCNNGG 2 cut(s) 194, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseCI ATCGAT 2 cut(s) 414, 644
BseDI CCNNGG 2 cut(s) 194, 503
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 3 cut(s) 60, 196, 488
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 4 cut(s) 143, 278, 374, 557
BshVI ATCGAT 2 cut(s) 414, 644
BslFI GGGAC 2 cut(s) 176, 415
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 176, 415
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 4 cut(s) 143, 278, 374, 557
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 147, 602
Bsp1720I GCTNAGC 1 cut(s) 474
BspANI GGCC 4 cut(s) 143, 278, 374, 557
BspCNI CTCAG 3 cut(s) 61, 195, 487
BspDI ATCGAT 2 cut(s) 414, 644
BspLI GGNNCC 2 cut(s) 192, 226
BspPI GGATC 1 cut(s) 597
BssECI CCNNGG 2 cut(s) 194, 503
BssMI GATC 2 cut(s) 147, 602
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 3 cut(s) 365, 406, 428
Bst6I CTCTTC 1 cut(s) 29
BstC8I GCNNGC 5 cut(s) 235, 239, 260, 280, 598
BstDEI CTNAG 3 cut(s) 69, 182, 474
BstDSI CCRYGG 1 cut(s) 503
BstKTI GATC 2 cut(s) 150, 605
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 147, 602
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 147, 602
BstYI RGATCY 2 cut(s) 147, 602
Bsu15I ATCGAT 2 cut(s) 414, 644
BsuRI GGCC 4 cut(s) 143, 278, 374, 557
BsuTUI ATCGAT 2 cut(s) 414, 644
BtgI CCRYGG 1 cut(s) 503
BtsIMutI CAGTG 1 cut(s) 433
Cac8I GCNNGC 5 cut(s) 235, 239, 260, 280, 598
Cfr13I GGNCC 2 cut(s) 190, 372
ClaI ATCGAT 2 cut(s) 414, 644
Csp6I GTAC 1 cut(s) 407
CviAII CATG 1 cut(s) 242
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 3 cut(s) 69, 182, 474
DpnI GATC 2 cut(s) 149, 604
DpnII GATC 2 cut(s) 147, 602
DriI GACNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 29
Eam1105I GACNNNNNGTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 194
Eco147I AGGCCT 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 1 cut(s) 245
FaiI YATR 9 cut(s) 63, 128, 243, 435, 459, 492, 554, 561, 574
FaqI GGGAC 2 cut(s) 176, 415
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 662
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 4 cut(s) 143, 278, 374, 557
Hin1II CATG 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 5 cut(s) 85, 100, 307, 623, 646
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 185, 220, 444
Hpy188III TCNNGA 2 cut(s) 154, 590
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 28, 238
HpyCH4III ACNGT 3 cut(s) 365, 406, 428
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 5 cut(s) 282, 352, 461, 533, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 3 cut(s) 69, 182, 474
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 2 cut(s) 147, 602
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 7 cut(s) 25, 167, 247, 251, 292, 494, 603
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 1 cut(s) 662
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 149, 604
MboI GATC 2 cut(s) 147, 602
MboII GAAGA 3 cut(s) 16, 142, 687
MfeI CAATTG 2 cut(s) 270, 627
MflI RGATCY 2 cut(s) 147, 602
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 4 cut(s) 214, 270, 547, 627
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 79, 94
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 32, 41, 268, 333, 529, 660
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 3 cut(s) 44, 480, 691
Msp20I TGGCCA 1 cut(s) 143
MunI CAATTG 2 cut(s) 270, 627
Mva1269I GAATGC 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 2 cut(s) 147, 602
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 192, 226
NmuCI GTSAC 1 cut(s) 82
PceI AGGCCT 1 cut(s) 278
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 307, 623, 646
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 2 cut(s) 79, 94
PpsI GAGTC 2 cut(s) 79, 94
PspN4I GGNNCC 2 cut(s) 192, 226
PspPI GGNCC 2 cut(s) 190, 372
PsuI RGATCY 2 cut(s) 147, 602
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SaqAI TTAA 3 cut(s) 44, 480, 691
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 147, 602
Sau96I GGNCC 2 cut(s) 190, 372
SchI GAGTC 2 cut(s) 79, 94
SduI GDGCHC 1 cut(s) 165
SetI ASST 5 cut(s) 33, 350, 412, 480, 598
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
Sse9I AATT 4 cut(s) 214, 270, 547, 627
SseBI AGGCCT 1 cut(s) 278
SspMI CTAG 1 cut(s) 662
StuI AGGCCT 1 cut(s) 278
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 365, 406, 428
TaiI ACGT 1 cut(s) 350
TaqI TCGA 4 cut(s) 327, 392, 414, 644
TasI AATT 4 cut(s) 214, 270, 547, 627
TfiI GAWTC 3 cut(s) 307, 623, 646
Tru1I TTAA 3 cut(s) 44, 480, 691
Tru9I TTAA 3 cut(s) 44, 480, 691
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 4 cut(s) 115, 267, 313, 651
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 547
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.