Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

9826673 .. 9828695

Gene Structure 2023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGTTTTACCAAACCCTTCCTCTTCCTCTTCTTCTTGTTCTTGGTCTCAAACCCATCTCAATCTTATGCTGCTGAGAATGTGAGTGTGACTCTCTACTACGAGACTCTGTGTCCTTATTGTGCCGATTTCATAGTGAACCATTTGGCCAAGATCTTCCAGAATGGGCTCATCCCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAATGCTTGGCTCAATTCCGATGGCTCCTTCGCCTGCCAGTGCTCTACGACGTTGTTCTTAGTGATGTCAGTGTGTCACGAGAAGTTTTTAATCGGCATTTTACATTCTTCCATTGCGTTGAGAGGCTCACATTGCAGAACAAGCACAGTAAATGGGGATTTTGAAATGTCGAAGTTGGGGACTGTACCTATCGATTGCTACAACAGTGGATATGGCAATCAGATTGAAGCAAAATATGCAGAGGAAACTGGTCAGCTTAATCCACCACATAGATTTGTGCCATGGCTGGTTGTCAATAATAAACCACTTGCAGAGGACTACGGAAATTTTATGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

181

Amino Acids

20.27

Weight (kDa)

5.9

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	30 - 82	4e-13	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	532
AfaI	GTAC	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	371, 434
AhdI	GACNNNNNGTC	1 cut(s)	111
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	2 cut(s)	52, 98
AoxI	GGCC	2 cut(s)	147, 540
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	171
BauI	CACGAG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	3 cut(s)	64, 185, 221
BcoDI	GTCTC	2 cut(s)	52, 98
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	196
BmeRI	GACNNNNNGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	198, 232
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
Bsa29I	ATCGAT	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	200, 488
Bse1I	ACTGG	2 cut(s)	244, 460
Bse3DI	GCAATG	3 cut(s)	214, 318, 337
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	200, 488
BseGI	GGATG	1 cut(s)	171
BseMI	GCAATG	3 cut(s)	214, 318, 337
BseMII	CTCAG	2 cut(s)	66, 202
BseNI	ACTGG	2 cut(s)	244, 460
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	149, 542
BshVI	ATCGAT	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	251
BslFI	GGGAC	2 cut(s)	182, 400
BsmAI	GTCTC	2 cut(s)	52, 98
BsmFI	GGGAC	2 cut(s)	182, 400
BsnI	GGCC	2 cut(s)	149, 542
Bso31I	GGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	171, 251
Bsp143I	GATC	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	488
BspANI	GGCC	2 cut(s)	149, 542
BspCNI	CTCAG	2 cut(s)	67, 201
BspDI	ATCGAT	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	198, 232
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	3 cut(s)	214, 318, 337
BsrI	ACTGG	2 cut(s)	244, 460
BssECI	CCNNGG	2 cut(s)	200, 488
BssMI	GATC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	2 cut(s)	200, 488
Bst2BI	CACGAG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	355, 391, 413
Bst6I	CTCTTC	2 cut(s)	29, 35
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	75, 188, 265
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	52, 98
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	3 cut(s)	339, 348, 443
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	149, 542
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	251, 282, 418
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	1 cut(s)	489
CviJI	RGCY	8 cut(s)	149, 169, 217, 231, 333, 463, 493, 542
CviKI_1	RGCY	8 cut(s)	149, 169, 217, 231, 333, 463, 493, 542
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	3 cut(s)	75, 188, 265
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
DriI	GACNNNNNGTC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	29, 35
Eam1105I	GACNNNNNGTC	1 cut(s)	111
EarI	CTCTTC	2 cut(s)	29, 35
Eco130I	CCWWGG	2 cut(s)	200, 488
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	200, 488
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	200, 488
FaeI	CATG	1 cut(s)	492
FaiI	YATR	7 cut(s)	69, 134, 420, 444, 477, 490, 539
FaqI	GGGAC	2 cut(s)	182, 400
FatI	CATG	1 cut(s)	488
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	149, 542
Hin1II	CATG	1 cut(s)	492
HinfI	GANTC	2 cut(s)	91, 106
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	191, 226, 429
Hpy188III	TCNNGA	2 cut(s)	160, 284
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	28, 244
HpyCH4III	ACNGT	3 cut(s)	355, 391, 413
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	342, 446, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	339, 348, 443
HpyF3I	CTNAG	3 cut(s)	75, 188, 265
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	492
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	173, 253, 257, 441, 479
Lsp1109I	GCAGC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	2 cut(s)	88, 281
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	5 cut(s)	16, 22, 25, 148, 306
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	171, 251
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	2 cut(s)	220, 532
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	85, 100
MnlI	CCTC	5 cut(s)	32, 38, 323, 442, 514
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	2 cut(s)	296, 465
Msp20I	TGGCCA	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	339, 348, 443
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	492
NlaIV	GGNNCC	2 cut(s)	198, 232
NmuCI	GTSAC	2 cut(s)	88, 281
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	85, 100
PpsI	GAGTC	2 cut(s)	85, 100
PspN4I	GGNNCC	2 cut(s)	198, 232
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	296, 465
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	85, 100
SduI	GDGCHC	2 cut(s)	171, 251
SetI	ASST	3 cut(s)	260, 397, 465
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	2 cut(s)	220, 532
StyI	CCWWGG	2 cut(s)	200, 488
TaaI	ACNGT	3 cut(s)	355, 391, 413
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	377, 399
TasI	AATT	2 cut(s)	220, 532
Tru1I	TTAA	2 cut(s)	296, 465
Tru9I	TTAA	2 cut(s)	296, 465
TscAI	CASTG	3 cut(s)	251, 282, 418
TseFI	GTSAC	2 cut(s)	88, 281
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	2 cut(s)	88, 281
TspDTI	ATGAA	1 cut(s)	121
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	3 cut(s)	251, 282, 418
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.