Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

61389560 .. 61420809

Gene Structure 31250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG356700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAGGAAAACGCCCTAGCGGAAGCCCCAGATTTCCAAATTTCAAATTCAATCGAATCAATCCCTTAGTCGAACACTCATATCCAGCCTTCAATCCCATTAAAATGATTCAATCCCCTTCCAGATTTCAAATTCAATCCCTTAGTCGAACATTCGAACCCAGCCTTCAAGTCTCTTCGTCCTCCTCCGCCGCCGCTGCAAGTCTCTTCCAAGCAATCCAAATCTCCGAGTGGAAGGGCGCTGGGATCTGCGCAGCCGTGCGCTGCGCTAGGCTGACGCCGACGAATCCGATCTGGAGGCTGGAGGCTTGCTTGGCTGGAGGCCCGTGGGACGAAAGGATTATGCCGTCGAAGTTCATGGCGGAGCGGAGGGGAGTTCAGCGCCAGTGGCGGCCCGTGCGGCGTCTCCTAGTGTCGGTGGCTAATGAGGATTCAAAGTTCTTTAATTGCAGGAGGGAGCGTGTTGCTGCAAGTGGCGGGGAAGTAGGGAGGTTGAGCATTGTTGGTGGTGTGGAGATTGGTCCTCTTCGTTGTTGGCCAGGAGGTTTATGCTTTTCTAGGTCGATTGGAGACATGGATGTTGTGGAGTTCATAGTTCCAATACCATATGTGAAACAAGTCAAGCTATCAAATAGAGGAGGGAGGACTCATAATTGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

220

Amino Acids

24.51

Weight (kDa)

10.33

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	253
AccBSI	CCGCTC	1 cut(s)	367
AciI	CCGC	9 cut(s)	21, 189, 192, 195, 362, 367, 391, 400, 477
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	536
AcsI	RAATTY	3 cut(s)	40, 47, 132
AcyI	GRCGYC	2 cut(s)	278, 403
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	8 cut(s)	46, 52, 94, 113, 131, 137, 170, 435
AjnI	CCWGG	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	1 cut(s)	625
AluI	AGCT	1 cut(s)	625
Alw26I	GTCTC	4 cut(s)	178, 209, 410, 564
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	3 cut(s)	322, 392, 536
ApeKI	GCWGC	4 cut(s)	197, 254, 264, 467
ApoI	RAATTY	3 cut(s)	40, 47, 132
AspLEI	GCGC	5 cut(s)	242, 254, 264, 269, 384
AspS9I	GGNCC	3 cut(s)	323, 393, 521
AsuII	TTCGAA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	538
BbvI	GCAGC	4 cut(s)	184, 251, 266, 454
BceAI	ACGGC	2 cut(s)	242, 331
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	4 cut(s)	178, 209, 410, 564
BfaI	CTAG	4 cut(s)	18, 270, 410, 558
BfoI	RGCGCY	2 cut(s)	243, 385
BglI	GCCNNNNNGGC	1 cut(s)	400
BisI	GCNGC	8 cut(s)	192, 195, 198, 255, 265, 392, 401, 468
BlsI	GCNGC	8 cut(s)	193, 196, 199, 256, 266, 393, 402, 469
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	3 cut(s)	323, 393, 521
BmrFI	CCNGG	1 cut(s)	540
BpmI	CTGGAG	3 cut(s)	316, 323, 339
Bpu14I	TTCGAA	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	278, 403
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	175, 651
BseXI	GCAGC	4 cut(s)	184, 251, 266, 454
BseYI	CCCAGC	2 cut(s)	161, 242
BshFI	GGCC	3 cut(s)	324, 394, 538
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	4 cut(s)	178, 209, 410, 564
BsmBI	CGTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	324, 394, 538
Bsp119I	TTCGAA	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	246, 291
BspACI	CCGC	9 cut(s)	21, 189, 192, 195, 362, 367, 391, 400, 477
BspANI	GGCC	3 cut(s)	324, 394, 538
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	246, 291
BssNI	GRCGYC	2 cut(s)	278, 403
Bst2UI	CCWGG	1 cut(s)	540
Bst6I	CTCTTC	3 cut(s)	181, 212, 531
BstACI	GRCGYC	2 cut(s)	278, 403
BstBI	TTCGAA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	67, 143
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	583
BstH2I	RGCGCY	2 cut(s)	243, 385
BstHHI	GCGC	5 cut(s)	242, 254, 264, 269, 384
BstKTI	GATC	2 cut(s)	249, 294
BstMAI	GTCTC	4 cut(s)	178, 209, 410, 564
BstMBI	GATC	2 cut(s)	246, 291
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 314, 388, 397, 400
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstV1I	GCAGC	4 cut(s)	184, 251, 266, 454
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	3 cut(s)	324, 394, 538
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	5 cut(s)	242, 254, 264, 269, 384
Cfr13I	GGNCC	3 cut(s)	323, 393, 521
CseI	GACGC	2 cut(s)	286, 392
CviAII	CATG	2 cut(s)	358, 574
DdeI	CTNAG	2 cut(s)	67, 143
DpnI	GATC	2 cut(s)	248, 293
DpnII	GATC	2 cut(s)	246, 291
EaeI	YGGCCR	1 cut(s)	536
Eam1104I	CTCTTC	3 cut(s)	181, 212, 531
EarI	CTCTTC	3 cut(s)	181, 212, 531
EciI	GGCGGA	2 cut(s)	178, 377
Eco47I	GGWCC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	2 cut(s)	361, 577
FaiI	YATR	9 cut(s)	82, 344, 359, 550, 575, 593, 607, 609, 651
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	2 cut(s)	357, 573
FauI	CCCGC	1 cut(s)	470
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	8 cut(s)	192, 195, 198, 255, 265, 392, 401, 468
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	8 cut(s)	192, 195, 198, 255, 265, 392, 401, 468
FspBI	CTAG	4 cut(s)	18, 270, 410, 558
FspI	TGCGCA	1 cut(s)	253
GlaI	GCGC	5 cut(s)	241, 253, 263, 268, 383
GluI	GCNGC	8 cut(s)	192, 195, 198, 255, 265, 392, 401, 468
GsaI	CCCAGC	2 cut(s)	165, 246
GsuI	CTGGAG	3 cut(s)	316, 323, 339
HaeII	RGCGCY	2 cut(s)	243, 385
HaeIII	GGCC	3 cut(s)	324, 394, 538
HgaI	GACGC	2 cut(s)	286, 392
HhaI	GCGC	5 cut(s)	242, 254, 264, 269, 384
Hin1I	GRCGYC	2 cut(s)	278, 403
Hin1II	CATG	2 cut(s)	361, 577
Hin6I	GCGC	5 cut(s)	240, 252, 262, 267, 382
HinP1I	GCGC	5 cut(s)	240, 252, 262, 267, 382
HinfI	GANTC	5 cut(s)	57, 109, 286, 431, 646
Hpy188I	TCNGA	3 cut(s)	229, 291, 662
Hpy188III	TCNNGA	2 cut(s)	123, 295
Hpy99I	CGWCG	2 cut(s)	286, 352
HpyAV	CCTTC	4 cut(s)	100, 129, 176, 229
HpyCH4V	TGCA	3 cut(s)	200, 450, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 314, 388, 397, 400
HpyF3I	CTNAG	2 cut(s)	67, 143
Hsp92I	GRCGYC	2 cut(s)	278, 403
Hsp92II	CATG	2 cut(s)	361, 577
HspAI	GCGC	5 cut(s)	240, 252, 262, 267, 382
Kzo9I	GATC	2 cut(s)	246, 291
LmnI	GCTCC	2 cut(s)	364, 457
Lsp1109I	GCAGC	4 cut(s)	184, 251, 266, 454
MaeI	CTAG	4 cut(s)	18, 270, 410, 558
MalI	GATC	2 cut(s)	248, 293
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	2 cut(s)	246, 291
MboII	GAAGA	3 cut(s)	168, 199, 518
MflI	RGATCY	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	538
MluCI	AATT	5 cut(s)	40, 47, 132, 445, 652
MluNI	TGGCCA	1 cut(s)	538
MlyI	GAGTC	1 cut(s)	640
Mox20I	TGGCCA	1 cut(s)	538
MscI	TGGCCA	1 cut(s)	538
MseI	TTAA	2 cut(s)	102, 444
MslI	CAYNNNNRTG	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	538
MspA1I	CMGCKG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	540
MteI	GCGCNGCGC	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	5 cut(s)	197, 314, 388, 397, 400
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	2 cut(s)	246, 291
NlaIII	CATG	2 cut(s)	361, 577
NsbI	TGCGCA	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	156
PfeI	GAWTC	4 cut(s)	57, 109, 286, 431
PkrI	GCNGC	8 cut(s)	193, 196, 199, 256, 266, 393, 402, 469
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	2 cut(s)	161, 242
PspGI	CCWGG	1 cut(s)	538
PspPI	GGNCC	3 cut(s)	323, 393, 521
PsuI	RGATCY	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	102, 444
SatI	GCNGC	8 cut(s)	192, 195, 198, 255, 265, 392, 401, 468
Sau3AI	GATC	2 cut(s)	246, 291
Sau96I	GGNCC	3 cut(s)	323, 393, 521
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	540
SetI	ASST	4 cut(s)	494, 547, 563, 627
SfuI	TTCGAA	1 cut(s)	156
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	40, 47, 132, 445, 652
SsiI	CCGC	9 cut(s)	21, 189, 192, 195, 362, 367, 391, 400, 477
SspMI	CTAG	4 cut(s)	18, 270, 410, 558
StyD4I	CCNGG	1 cut(s)	538
TaqI	TCGA	6 cut(s)	55, 72, 148, 156, 350, 563
TasI	AATT	5 cut(s)	40, 47, 132, 445, 652
TauI	GCSGC	4 cut(s)	194, 197, 394, 403
TfiI	GAWTC	4 cut(s)	57, 109, 286, 431
Tru1I	TTAA	2 cut(s)	102, 444
Tru9I	TTAA	2 cut(s)	102, 444
TscAI	CASTG	1 cut(s)	392
TseI	GCWGC	4 cut(s)	197, 254, 264, 467
TspDTI	ATGAA	2 cut(s)	346, 580
TspRI	CASTG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	3 cut(s)	40, 47, 132
XspI	CTAG	4 cut(s)	18, 270, 410, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.