Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034388.1

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1042

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034388.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atgggttttaccagactcttcctcttcttcctccttttggtcttaaacccatctcaatcttatgctgccaagaatgtgagtgtgactctctactacgagactctgtgtccttattgtgccgatttcatagtgaaccatctggccaagatcttccagaatgggctcatctccatcgtcaatctcagaatggtcccttggggcaacgcttggctcaattccgacggctccttcgcctgccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

80

Amino Acids

9.07

Weight (kDa)

7.72

Isoelectric Point (pI)

25.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	37
AhdI	GACNNNNNGTC	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	65
ArsI	GACNNNNNNTTYG	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	3 cut(s)	58, 144, 179
BceAI	ACGGC	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	190
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	192, 226
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	52
BshFI	GGCC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	192, 226
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	23, 29
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	190
CviJI	RGCY	4 cut(s)	143, 163, 211, 225
CviKI_1	RGCY	4 cut(s)	143, 163, 211, 225
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DriI	GACNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	23, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	2 cut(s)	23, 29
Eco130I	CCWWGG	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	194
FaiI	YATR	2 cut(s)	63, 128
FaqI	GGGAC	1 cut(s)	176
Fnu4HI	GCNGC	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	143
HinfI	GANTC	3 cut(s)	15, 85, 100
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	185, 220
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	238
HpyF3I	CTNAG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	25, 125, 167
Lsp1109I	GCAGC	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	10, 16, 19, 142
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	1 cut(s)	214
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	3 cut(s)	9, 79, 94
MnlI	CCTC	2 cut(s)	32, 41
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	143
NdeII	GATC	1 cut(s)	147
NlaIV	GGNNCC	2 cut(s)	192, 226
NmuCI	GTSAC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	3 cut(s)	9, 79, 94
PpsI	GAGTC	3 cut(s)	9, 79, 94
PspN4I	GGNNCC	2 cut(s)	192, 226
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	3 cut(s)	9, 79, 94
SduI	GDGCHC	1 cut(s)	165
SgeI	CNNG	8 cut(s)	24, 82, 109, 152, 157, 166, 207, 219
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	194
TasI	AATT	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.