Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005209.1

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

23646 .. 24901

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005209.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggtcccttggggcaacgcttggctcaattccgacggctccttcgcctgccagcatggaacagatgaatgcttgatcaacacaattgaggcctgcaccatcaccatctatcctaatgtgaatcggcattttacattcatcgactgcgttgagaggctcacgttgcagaacaaacacagtaaatgggccgattgctttgaaatgtcgaagttggggactgtacctatcgattgctacaacagtggatatggcaatcggattgaaacaaaatatgcaaaggaaactgctcagcttaatccaccacatagatttgtgccgtggctggttgtcaataataaaccacttgcagaggactacggaaattttatggcctatatctgtaaggcatacaaaggaaaatctccagaagcttgcagatccattcgctacaagactgaatcaattggaaatgaaaaatcgattcctcaagtttgcctagcagaacaacgaagaaactctacatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

8.05

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	200, 263
AluBI	AGCT	2 cut(s)	292, 410
AluI	AGCT	2 cut(s)	292, 410
AlwI	GGATC	1 cut(s)	411
AoxI	GGCC	3 cut(s)	90, 186, 369
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspS9I	GGNCC	2 cut(s)	4, 186
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	1 cut(s)	481
BccI	CCATC	2 cut(s)	107, 113
BceAI	ACGGC	2 cut(s)	52, 301
BclI	TGATCA	1 cut(s)	75
BfaI	CTAG	1 cut(s)	476
BlpI	GCTNAGC	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 186
BmiI	GGNNCC	2 cut(s)	6, 40
BpmI	CTGGAG	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	450
Bsa29I	ATCGAT	2 cut(s)	228, 458
BsaJI	CCNNGG	2 cut(s)	8, 317
BseCI	ATCGAT	2 cut(s)	228, 458
BseDI	CCNNGG	2 cut(s)	8, 317
BseMII	CTCAG	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	92, 188, 371
BshVI	ATCGAT	2 cut(s)	228, 458
BslFI	GGGAC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	92, 188, 371
Bsp143I	GATC	2 cut(s)	75, 416
Bsp1720I	GCTNAGC	1 cut(s)	288
BspANI	GGCC	3 cut(s)	92, 188, 371
BspCNI	CTCAG	1 cut(s)	301
BspDI	ATCGAT	2 cut(s)	228, 458
BspLI	GGNNCC	2 cut(s)	6, 40
BspPI	GGATC	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	8, 317
BssMI	GATC	2 cut(s)	75, 416
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	3 cut(s)	179, 220, 242
BstC8I	GCNNGC	4 cut(s)	49, 53, 94, 412
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	317
BstKTI	GATC	2 cut(s)	78, 419
BstMBI	GATC	2 cut(s)	75, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
Bsu15I	ATCGAT	2 cut(s)	228, 458
BsuRI	GGCC	3 cut(s)	92, 188, 371
BsuTUI	ATCGAT	2 cut(s)	228, 458
BtgI	CCRYGG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	4 cut(s)	49, 53, 94, 412
Cfr13I	GGNCC	2 cut(s)	4, 186
ClaI	ATCGAT	2 cut(s)	228, 458
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	9 cut(s)	25, 39, 92, 157, 188, 292, 322, 371, 410
CviKI_1	RGCY	9 cut(s)	25, 39, 92, 157, 188, 292, 322, 371, 410
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	77, 418
DpnII	GATC	2 cut(s)	75, 416
Eco130I	CCWWGG	1 cut(s)	8
Eco147I	AGGCCT	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	1 cut(s)	59
FaiI	YATR	7 cut(s)	57, 249, 273, 306, 368, 375, 388
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	75
FspBI	CTAG	1 cut(s)	476
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	3 cut(s)	92, 188, 371
Hin1II	CATG	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	3 cut(s)	121, 437, 460
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	34, 258
Hpy188III	TCNNGA	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	3 cut(s)	179, 220, 242
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	5 cut(s)	96, 166, 275, 347, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	75, 416
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	61, 65, 106, 308, 417
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	161
MalI	GATC	2 cut(s)	77, 418
MboI	GATC	2 cut(s)	75, 416
MboII	GAAGA	1 cut(s)	501
MfeI	CAATTG	2 cut(s)	84, 441
MflI	RGATCY	1 cut(s)	416
MluCI	AATT	4 cut(s)	28, 84, 361, 441
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	82, 147, 343, 474
MseI	TTAA	2 cut(s)	294, 505
MunI	CAATTG	2 cut(s)	84, 441
Mva1269I	GAATGC	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	2 cut(s)	75, 416
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	2 cut(s)	6, 40
PceI	AGGCCT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	121, 437, 460
PspN4I	GGNNCC	2 cut(s)	6, 40
PspPI	GGNCC	2 cut(s)	4, 186
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	294, 505
Sau3AI	GATC	2 cut(s)	75, 416
Sau96I	GGNCC	2 cut(s)	4, 186
SetI	ASST	4 cut(s)	164, 226, 294, 412
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	4 cut(s)	28, 84, 361, 441
SseBI	AGGCCT	1 cut(s)	92
SspMI	CTAG	1 cut(s)	476
StuI	AGGCCT	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	3 cut(s)	179, 220, 242
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	4 cut(s)	141, 206, 228, 458
TasI	AATT	4 cut(s)	28, 84, 361, 441
TfiI	GAWTC	3 cut(s)	121, 437, 460
Tru1I	TTAA	2 cut(s)	294, 505
Tru9I	TTAA	2 cut(s)	294, 505
TscAI	CASTG	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	81, 127, 465
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	361
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.