Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

6479680 .. 6480983

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10801.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTCCCTTGGGGCAACACTTGGCTCAATTCCGATGGCTCCTTCGCCTGCCAGCATGGAACAAATGAATGTCTGCTCAACACAATTGAGGCCTGCACCATCACCATCTATCCTAATGTGAATCGGCATTTTAGATTCATCCACTGCGTTCAGCGGCTCACATTGCAGAACAAGCACGGAAAATGGGCCGATTGCTTTGAAATGTTGAAGTTGGGGACTGTTCCTATCAATTGCTATAACAGTGGATATGGCAATCAGATTGAAACAAAATATGCAAAGGAAATTGCTCAACTTAATCCACCACATAGATTTGTGCCATGGCTGGTTGTCAATAATAAACCACTTGCAGAGAACTATGATAAATTCATGACCTACATCTGTAAAGCATACAAAGGAAAATCTCCAGAAGCTTACAGATTGATCCACTCCAAGACTAAATCAATTGGGAATGAAAGATCTATTCCTCAAGTTTTCTTAGCAGAACAAGGAAGAAACTCTACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

169

Amino Acids

19.27

Weight (kDa)

9.08

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	1 - 68	9.1e-17	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	200, 208, 263
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
AlwI	GGATC	1 cut(s)	415
AoxI	GGCC	2 cut(s)	90, 186
ApoI	RAATTY	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	4, 186
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	1 cut(s)	481
BccI	CCATC	3 cut(s)	29, 107, 113
BglII	AGATCT	1 cut(s)	455
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 186
BmiI	GGNNCC	2 cut(s)	6, 40
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	8, 317
Bse3DI	GCAATG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	8, 317
BseGI	GGATG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	161
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	92, 188
BslFI	GGGAC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	92, 188
Bsp143I	GATC	2 cut(s)	420, 455
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	2 cut(s)	92, 188
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	6, 40
BspPI	GGATC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	8, 317
BssMI	GATC	2 cut(s)	420, 455
BssT1I	CCWWGG	2 cut(s)	8, 317
Bst4CI	ACNGT	2 cut(s)	220, 242
BstC8I	GCNNGC	3 cut(s)	49, 53, 94
BstDEI	CTNAG	1 cut(s)	475
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	2 cut(s)	423, 458
BstMBI	GATC	2 cut(s)	420, 455
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 172
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	92, 188
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 247
Cac8I	GCNNGC	3 cut(s)	49, 53, 94
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	4, 186
CviAII	CATG	3 cut(s)	56, 318, 367
CviJI	RGCY	7 cut(s)	25, 39, 92, 157, 188, 322, 410
CviKI_1	RGCY	7 cut(s)	25, 39, 92, 157, 188, 322, 410
DdeI	CTNAG	1 cut(s)	475
DpnI	GATC	2 cut(s)	422, 457
DpnII	GATC	2 cut(s)	420, 455
Eco130I	CCWWGG	2 cut(s)	8, 317
Eco147I	AGGCCT	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	8, 317
ErhI	CCWWGG	2 cut(s)	8, 317
FaeI	CATG	3 cut(s)	59, 321, 370
FaiI	YATR	9 cut(s)	57, 237, 249, 273, 306, 319, 357, 368, 388
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	3 cut(s)	55, 317, 366
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	92, 188
Hin1II	CATG	3 cut(s)	59, 321, 370
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	2 cut(s)	121, 135
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	34, 258
Hpy188III	TCNNGA	2 cut(s)	367, 404
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	220, 242
HpyCH4V	TGCA	4 cut(s)	96, 166, 275, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 172
HpyF3I	CTNAG	1 cut(s)	475
Hsp92II	CATG	3 cut(s)	59, 321, 370
Kzo9I	GATC	2 cut(s)	420, 455
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	61, 65, 106, 308, 417
MalI	GATC	2 cut(s)	422, 457
MboI	GATC	2 cut(s)	420, 455
MboII	GAAGA	1 cut(s)	501
MfeI	CAATTG	3 cut(s)	84, 229, 441
MflI	RGATCY	1 cut(s)	455
MluCI	AATT	6 cut(s)	28, 84, 229, 282, 362, 441
MnlI	CCTC	2 cut(s)	82, 474
MseI	TTAA	2 cut(s)	294, 505
MspA1I	CMGCKG	1 cut(s)	154
MunI	CAATTG	3 cut(s)	84, 229, 441
MwoI	GCNNNNNNNGC	2 cut(s)	163, 172
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	420, 455
NlaIII	CATG	3 cut(s)	59, 321, 370
NlaIV	GGNNCC	2 cut(s)	6, 40
PagI	TCATGA	1 cut(s)	366
PceI	AGGCCT	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	121, 135
PkrI	GCNGC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	6, 40
PspPI	GGNCC	2 cut(s)	4, 186
PsuI	RGATCY	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	294, 505
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	2 cut(s)	420, 455
Sau96I	GGNCC	2 cut(s)	4, 186
SetI	ASST	2 cut(s)	374, 412
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	6 cut(s)	28, 84, 229, 282, 362, 441
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	154
StuI	AGGCCT	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	8, 317
TaaI	ACNGT	2 cut(s)	220, 242
TasI	AATT	6 cut(s)	28, 84, 229, 282, 362, 441
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	121, 135
Tru1I	TTAA	2 cut(s)	294, 505
Tru9I	TTAA	2 cut(s)	294, 505
TscAI	CASTG	2 cut(s)	149, 247
TspDTI	ATGAA	4 cut(s)	81, 127, 355, 465
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	149, 247
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.