Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

39401044 .. 39402626

Gene Structure 1583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAGTTTTACCAAACTCTTCCTCTTCTTCCTCCTCTTGGTCTTAAACCCATCTCAATCTTATGCTGTTGAGAATGTGAGTGTGAATCTCTACTACGAGACTCTCTGTCCTTATTGTGCTGATTTCATAGTGAACCATTTGGCCAAGATCTTCCAGAATGGGCTCATCTCCATCGTCAATGTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCTGATGGCTCCTTCGCCTGCCAGCATGGAACAGATGAATGCTTGCTCAACACAATTGAGGCCTGCACCATCACCATCTATCCTGATGTGAATCAGCATTTTACATTCATCCACTGCGTTGAGAGGCTAATGTTGCAGAACAAACACAGTAAATGGGCCGATTGCTTTGAAATGTCGAAGTTGGGGACTGTACCTATTGATTGCTACAACAGTGGATATGGCAATCAGGTCAGTTCTCTTTCAATCCTATTTTGTTCTTGCTGTTTTTGCACTGCTTCTAATGGCAGAGCAACACCAGATCATACCAGCTCAAGAATACAACACAAGTCACATACACATTCTTCATATGAGCTGGAGGAGAAAGATGAATCAGATGGTGATTCAGCCCTAACAAGAGCAGAACAAGTCCAAACTCAGAAGAGGATAATACCTGAAATTGAAGACAGAACTTGTCCAAACAGAGCCAAGGCATTTCAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

232

Amino Acids

26.24

Weight (kDa)

5.67

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	28 - 129	1.2e-31	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	386, 459, 656
AhdI	GACNNNNNGTC	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	2 cut(s)	525, 568
AluI	AGCT	2 cut(s)	525, 568
Alw26I	GTCTC	1 cut(s)	92
AoxI	GGCC	3 cut(s)	141, 276, 372
AspS9I	GGNCC	2 cut(s)	190, 372
AsuHPI	GGTGA	2 cut(s)	280, 605
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	663
BccI	CCATC	6 cut(s)	58, 179, 215, 293, 299, 584
BcoDI	GTCTC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	190
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	190, 372
BmiI	GGNNCC	2 cut(s)	192, 226
BpiI	GAAGAC	1 cut(s)	663
BpmI	CTGGAG	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	194, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	194, 681
BseGI	GGATG	1 cut(s)	324
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	644
BseRI	GAGGAG	2 cut(s)	23, 587
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	3 cut(s)	143, 278, 374
BslFI	GGGAC	2 cut(s)	176, 415
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	176, 415
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	143, 278, 374
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	147, 514
BspANI	GGCC	3 cut(s)	143, 278, 374
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	192, 226
BssECI	CCNNGG	2 cut(s)	194, 681
BssMI	GATC	2 cut(s)	147, 514
BssT1I	CCWWGG	2 cut(s)	194, 681
Bst4CI	ACNGT	3 cut(s)	365, 406, 428
Bst6I	CTCTTC	3 cut(s)	23, 29, 629
BstC8I	GCNNGC	4 cut(s)	235, 239, 260, 280
BstDEI	CTNAG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	150, 517
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	147, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 483
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	143, 278, 374
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	2 cut(s)	328, 486
BtsIMutI	CAGTG	3 cut(s)	328, 433, 486
Cac8I	GCNNGC	4 cut(s)	235, 239, 260, 280
Cfr13I	GGNCC	2 cut(s)	190, 372
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	2 cut(s)	149, 516
DpnII	GATC	2 cut(s)	147, 514
DriI	GACNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	3 cut(s)	23, 29, 629
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	3 cut(s)	23, 29, 629
Eco130I	CCWWGG	2 cut(s)	194, 681
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	194, 681
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	2 cut(s)	194, 681
FaeI	CATG	1 cut(s)	245
FaiI	YATR	8 cut(s)	63, 128, 243, 435, 519, 549, 562, 564
FaqI	GGGAC	2 cut(s)	176, 415
FatI	CATG	1 cut(s)	241
FauNDI	CATATG	1 cut(s)	562
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	3 cut(s)	143, 278, 374
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	5 cut(s)	85, 100, 307, 584, 596
HphI	GGTGA	2 cut(s)	280, 605
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	4 cut(s)	185, 220, 589, 633
Hpy188III	TCNNGA	3 cut(s)	154, 299, 528
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	3 cut(s)	365, 406, 428
HpyCH4V	TGCA	3 cut(s)	282, 352, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 483
HpyF3I	CTNAG	1 cut(s)	630
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	147, 514
LmnI	GCTCC	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	2 cut(s)	149, 516
MboI	GATC	2 cut(s)	147, 514
MboII	GAAGA	7 cut(s)	10, 16, 19, 142, 549, 646, 668
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	214, 270, 651
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	32, 41, 44, 268, 333, 565, 630
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	44, 697
Msp20I	TGGCCA	1 cut(s)	143
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	349, 483
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	2 cut(s)	147, 514
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	192, 226
NmuCI	GTSAC	1 cut(s)	543
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	4 cut(s)	85, 307, 584, 596
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	192, 226
PspPI	GGNCC	2 cut(s)	190, 372
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	44, 697
Sau3AI	GATC	2 cut(s)	147, 514
Sau96I	GGNCC	2 cut(s)	190, 372
SchI	GAGTC	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	5 cut(s)	412, 447, 527, 570, 649
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	3 cut(s)	214, 270, 651
SseBI	AGGCCT	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	278
StyI	CCWWGG	2 cut(s)	194, 681
TaaI	ACNGT	3 cut(s)	365, 406, 428
TaqI	TCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	214, 270, 651
TfiI	GAWTC	4 cut(s)	85, 307, 584, 596
Tru1I	TTAA	2 cut(s)	44, 697
Tru9I	TTAA	2 cut(s)	44, 697
TscAI	CASTG	3 cut(s)	335, 433, 493
TseFI	GTSAC	1 cut(s)	543
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	5 cut(s)	115, 267, 313, 549, 597
TspRI	CASTG	3 cut(s)	335, 433, 493
VpaK11BI	GGWCC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.