Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004530.1

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

110 .. 1428

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004530.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgggttttaccagactcttcctcttcttccaccttttggtcttaaacccatctcaatcttatgctgccaagaatgtgagtgtgactctctactacgagactctgtgtccttattgtgccgatttcatagtgaaccatctggccaagatcttccagaatgggctcatctccatcgtcaatctcagaatggtcccttggggcaacgcttggctcaattccgacggctccttcgcctgccagttcgctttcgatcaggcctgtgagaaattggaggtagatataattgcgattgatttttcggagaagttaccatttcaattgaagcagcctctggttaaagctgccattgagcggaaggtgtattttgagatcacatatgcagggcttattgccgatgttcaaactagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

136

Amino Acids

15.44

Weight (kDa)

5.57

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccBSI	CCGCTC	1 cut(s)	352
AciI	CCGC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	37, 351
AgsI	TTSAA	3 cut(s)	317, 322, 401
AhdI	GACNNNNNGTC	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	2 cut(s)	341, 408
AluI	AGCT	2 cut(s)	341, 408
Alw26I	GTCTC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	2 cut(s)	141, 255
ApeKI	GCWGC	3 cut(s)	65, 325, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspS9I	GGNCC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	52, 328, 337
BccI	CCATC	3 cut(s)	58, 144, 179
BceAI	ACGGC	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	405, 409
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	3 cut(s)	66, 326, 342
BlsI	GCNGC	3 cut(s)	67, 327, 343
Bme18I	GGWCC	1 cut(s)	190
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	192, 226
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 351
Bse1I	ACTGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	194
BseLI	CCNNNNNNNGG	2 cut(s)	37, 351
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	52, 328, 337
BshFI	GGCC	2 cut(s)	143, 257
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	37, 351
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	143, 257
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	147, 250, 369
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	2 cut(s)	143, 257
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	192, 226
BsrBI	CCGCTC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	147, 250, 369
BssT1I	CCWWGG	1 cut(s)	194
Bst6I	CTCTTC	2 cut(s)	23, 29
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	182
BstKTI	GATC	3 cut(s)	150, 253, 372
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	147, 250, 369
BstV1I	GCAGC	3 cut(s)	52, 328, 337
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	143, 257
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	190
CviJI	RGCY	9 cut(s)	143, 163, 211, 225, 257, 328, 341, 385, 408
CviKI_1	RGCY	9 cut(s)	143, 163, 211, 225, 257, 328, 341, 385, 408
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	3 cut(s)	149, 252, 371
DpnII	GATC	3 cut(s)	147, 250, 369
DriI	GACNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	23, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	2 cut(s)	23, 29
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	194
FaiI	YATR	5 cut(s)	63, 128, 281, 376, 378
FaqI	GGGAC	1 cut(s)	176
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	66, 326, 342
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	3 cut(s)	66, 326, 342
FspBI	CTAG	2 cut(s)	405, 409
GluI	GCNGC	3 cut(s)	66, 326, 342
HaeIII	GGCC	2 cut(s)	143, 257
HinfI	GANTC	3 cut(s)	15, 85, 100
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	185, 220, 301
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	238, 349
HpyCH4V	TGCA	1 cut(s)	380
HpyF3I	CTNAG	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	147, 250, 369
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	9 cut(s)	25, 125, 167, 239, 247, 251, 271, 317, 366
Lsp1109I	GCAGC	3 cut(s)	52, 328, 337
MaeI	CTAG	2 cut(s)	405, 409
MaeIII	GTNAC	2 cut(s)	82, 306
MalI	GATC	3 cut(s)	149, 252, 371
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	3 cut(s)	147, 250, 369
MboII	GAAGA	4 cut(s)	10, 16, 19, 142
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	4 cut(s)	214, 266, 282, 317
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	3 cut(s)	9, 79, 94
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	3 cut(s)	32, 265, 339
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	44, 336
Msp20I	TGGCCA	1 cut(s)	143
MunI	CAATTG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	3 cut(s)	147, 250, 369
NlaIV	GGNNCC	2 cut(s)	192, 226
NmuCI	GTSAC	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	67, 327, 343
PleI	GAGTC	3 cut(s)	9, 79, 94
PpsI	GAGTC	3 cut(s)	9, 79, 94
PspN4I	GGNNCC	2 cut(s)	192, 226
PspPI	GGNCC	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	44, 336
SatI	GCNGC	3 cut(s)	66, 326, 342
Sau3AI	GATC	3 cut(s)	147, 250, 369
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	3 cut(s)	9, 79, 94
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	5 cut(s)	36, 276, 343, 360, 410
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	4 cut(s)	214, 266, 282, 317
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	2 cut(s)	405, 409
StuI	AGGCCT	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	194
TaqI	TCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	214, 266, 282, 317
Tru1I	TTAA	2 cut(s)	44, 336
Tru9I	TTAA	2 cut(s)	44, 336
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	3 cut(s)	65, 325, 341
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	190
XspI	CTAG	2 cut(s)	405, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.