Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

26669318 .. 26674756

Gene Structure 5439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0192300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGATGAAACGCTTGAGGAGAAGGAAGATGAGTATATTTTTAATTTATGTTGAGAGTACGAATGAATATACGGACGATGAAGATGTCAATTGGAAAGTCCGAAGAGCAGCAGCTAAATGCTTAGCGGCATTAATTGTATCTCGTCCTGAGATGCTTGCCAAGCTATATGAGGAGATGGATGTTTTCATTACTTTCACTGAGCTCTTGCAGCAAACTGGAAATGTCAAAAAGAGCCATTTTGACATTAATGAACAGATAACAGGAAAGATGATCCCCAAGTCATTTATTGTCTGCATTTGGTATTTTGTAGAGCCTGGAGACCTGGGGGAAGTTGATGAACCAATTGCTCAAATTGAAACAGATAAGGTCACGATCGATCTTGCTAGTCCTGAATCCGGTGTAATTATGAAGCCAATGAAGGGGATACTGTGGAACCAAGCACCAAGATTTGTTGTCATACTAAAGTCCAGTGAAGGTGTATCCCATGTGGGTCCATCTGAGAAAACATTGGAGAAAGCTTTTCCACAACCAGCTTCCCCTGTAGAAACAATTAGCAAGAATCAAACATCTAAAGTTGTAATAACTCCAGTTACCAAGAAGCCTAAAGCACCCTCTCCACCATCTCCTAAACCCTCAGCTCAAGAACCTCAGCTCCCCTCTAAGGAAAGGGAAAGAAGAGCAAGTCTTTTATGGACAAATTTGATGAAGCTTCGTTGTGACTTCAAGGATGCATCTGTTGAGAAGCATGGGGTCAAGTTGGGGCTTATGTCGAGATTCATCAAGGCTGCTGTCAGTGGGCTCCAAAATCAGCCTACTATTAATGCAGTCATTGATGGGGATGATATCATATATAGAGATTACATAGATATAAGTGCAGCTGTGGGTACTCCAAAGGGCCTTGTTGTGCCAGTTATCCGCAATGCTGATAAGATGAATTGTGGTGAGATTGAGAAGGAGATCAATTCGCTTGCAAAGAAGGCAAATGAGGGACGTCTTTCAATTGATGATATGGCTGGAGGTTCATTTACAATATCCAATGGTGGATTTTATGGAAGCCTTATAAGTACCCCCATCATCAACCCTCCTCAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

364

Amino Acids

40.33

Weight (kDa)

8.67

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	99 - 136	5e-06	Biotin-requiring enzyme
2-oxoacid_dh	PF00198	231 - 364	6.7e-43	2-oxoacid dehydrogenases acyltransferase (catalytic domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1061
AatII	GACGTC	1 cut(s)	994
AciI	CCGC	2 cut(s)	125, 916
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	697
AcyI	GRCGYC	1 cut(s)	991
AfaI	GTAC	3 cut(s)	58, 886, 1066
AfiI	CCNNNNNNNGG	4 cut(s)	395, 419, 661, 1087
AgsI	TTSAA	3 cut(s)	356, 724, 999
AjnI	CCWGG	2 cut(s)	313, 321
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	9 cut(s)	113, 163, 202, 518, 533, 638, 652, 709, 878
AluI	AGCT	9 cut(s)	113, 163, 202, 518, 533, 638, 652, 709, 878
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	895
ApeKI	GCWGC	5 cut(s)	107, 110, 208, 785, 875
ApoI	RAATTY	1 cut(s)	697
AseI	ATTAAT	3 cut(s)	131, 246, 819
AspS9I	GGNCC	2 cut(s)	491, 895
AsuHPI	GGTGA	1 cut(s)	953
AvaII	GGWCC	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	1086
BanII	GRGCYC	2 cut(s)	204, 801
Bbv12I	GWGCWC	1 cut(s)	204
BbvCI	CCTCAGC	2 cut(s)	634, 648
BbvI	GCAGC	5 cut(s)	119, 122, 220, 772, 887
BccI	CCATC	5 cut(s)	169, 502, 628, 827, 1079
BciT130I	CCWGG	2 cut(s)	315, 323
BciVI	GTATCC	2 cut(s)	417, 490
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	540
BfuI	GTATCC	2 cut(s)	417, 490
BisI	GCNGC	6 cut(s)	108, 111, 126, 209, 786, 876
BlpI	GCTNAGC	1 cut(s)	121
BlsI	GCNGC	6 cut(s)	109, 112, 127, 210, 787, 877
Bme1390I	CCNGG	2 cut(s)	315, 323
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	2 cut(s)	491, 895
BmiI	GGNNCC	3 cut(s)	434, 492, 800
BmrFI	CCNGG	2 cut(s)	315, 323
BmsI	GCATC	3 cut(s)	141, 718, 740
BpmI	CTGGAG	3 cut(s)	336, 570, 1035
Bpu10I	CCTNAGC	2 cut(s)	634, 648
Bpu1102I	GCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	2 cut(s)	34, 624
Bsa29I	ATCGAT	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	991
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	4 cut(s)	395, 419, 661, 1087
Bse1I	ACTGG	4 cut(s)	220, 468, 587, 908
Bse21I	CCTNAGG	1 cut(s)	1086
Bse3DI	GCAATG	1 cut(s)	925
BseBI	CCWGG	2 cut(s)	315, 323
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	3 cut(s)	184, 733, 844
BseLI	CCNNNNNNNGG	4 cut(s)	395, 419, 661, 1087
BseMI	GCAATG	1 cut(s)	925
BseMII	CTCAG	5 cut(s)	138, 189, 489, 648, 662
BseNI	ACTGG	4 cut(s)	220, 468, 587, 908
BseRI	GAGGAG	3 cut(s)	31, 185, 1074
BseXI	GCAGC	5 cut(s)	119, 122, 220, 772, 887
BsgI	GTGCAG	1 cut(s)	894
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	897
BshVI	ATCGAT	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	1002
BslI	CCNNNNNNNGG	4 cut(s)	395, 419, 661, 1087
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	1002
BsnI	GGCC	1 cut(s)	897
Bso31I	GGTCTC	1 cut(s)	312
Bsp1286I	GDGCHC	2 cut(s)	204, 801
Bsp143I	GATC	4 cut(s)	270, 372, 376, 957
Bsp1720I	GCTNAGC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	125, 916
BspANI	GGCC	1 cut(s)	897
BspCNI	CTCAG	5 cut(s)	139, 190, 490, 647, 661
BspDI	ATCGAT	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	434, 492, 800
BspPI	GGATC	1 cut(s)	265
BspQI	GCTCTTC	2 cut(s)	97, 670
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	925
BsrI	ACTGG	4 cut(s)	220, 468, 587, 908
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	4 cut(s)	270, 372, 376, 957
BssNI	GRCGYC	1 cut(s)	991
Bst2UI	CCWGG	2 cut(s)	315, 323
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	2 cut(s)	97, 670
BstACI	GRCGYC	1 cut(s)	991
BstC8I	GCNNGC	2 cut(s)	156, 969
BstDEI	CTNAG	8 cut(s)	121, 147, 198, 498, 634, 648, 660, 1086
BstF5I	GGATG	3 cut(s)	184, 733, 844
BstKTI	GATC	4 cut(s)	273, 375, 379, 960
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	4 cut(s)	270, 372, 376, 957
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 208, 977
BstNI	CCWGG	2 cut(s)	315, 323
BstSCI	CCNGG	2 cut(s)	313, 321
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	5 cut(s)	119, 122, 220, 772, 887
Bsu15I	ATCGAT	1 cut(s)	375
Bsu36I	CCTNAGG	1 cut(s)	1086
BsuI	GTATCC	2 cut(s)	417, 490
BsuRI	GGCC	1 cut(s)	897
BsuTUI	ATCGAT	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	184, 733, 844
BtsIMutI	CAGTG	3 cut(s)	195, 475, 799
Cac8I	GCNNGC	2 cut(s)	156, 969
Cfr13I	GGNCC	2 cut(s)	491, 895
ClaI	ATCGAT	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	57, 885, 1065
CviAII	CATG	2 cut(s)	485, 746
CviQI	GTAC	3 cut(s)	57, 885, 1065
DdeI	CTNAG	8 cut(s)	121, 147, 198, 498, 634, 648, 660, 1086
DpnI	GATC	4 cut(s)	272, 374, 378, 959
DpnII	GATC	4 cut(s)	270, 372, 376, 957
Eam1104I	CTCTTC	2 cut(s)	97, 670
EarI	CTCTTC	2 cut(s)	97, 670
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	2 cut(s)	204, 801
Eco31I	GGTCTC	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	1086
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	895
EcoRII	CCWGG	2 cut(s)	313, 321
EcoRV	GATATC	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	2 cut(s)	204, 801
FaeI	CATG	2 cut(s)	488, 749
FaqI	GGGAC	1 cut(s)	1002
FatI	CATG	2 cut(s)	484, 745
Fnu4HI	GCNGC	6 cut(s)	108, 111, 126, 209, 786, 876
FokI	GGATG	3 cut(s)	191, 740, 851
FriOI	GRGCYC	2 cut(s)	204, 801
Fsp4HI	GCNGC	6 cut(s)	108, 111, 126, 209, 786, 876
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	6 cut(s)	108, 111, 126, 209, 786, 876
GsuI	CTGGAG	3 cut(s)	336, 570, 1035
HaeIII	GGCC	1 cut(s)	897
HapII	CCGG	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	991
Hin1II	CATG	2 cut(s)	488, 749
HindIII	AAGCTT	2 cut(s)	516, 707
HinfI	GANTC	3 cut(s)	392, 559, 774
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	1 cut(s)	953
Hpy188I	TCNGA	3 cut(s)	101, 499, 1094
Hpy188III	TCNNGA	5 cut(s)	146, 370, 389, 641, 771
HpyAV	CCTTC	5 cut(s)	15, 412, 467, 946, 970
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	1 cut(s)	991
HpyCH4V	TGCA	6 cut(s)	208, 294, 731, 824, 875, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 208, 977
HpyF3I	CTNAG	8 cut(s)	121, 147, 198, 498, 634, 648, 660, 1086
HpySE526I	ACGT	1 cut(s)	991
Hsp92I	GRCGYC	1 cut(s)	991
Hsp92II	CATG	2 cut(s)	488, 749
Kzo9I	GATC	4 cut(s)	270, 372, 376, 957
LguI	GCTCTTC	2 cut(s)	97, 670
LmnI	GCTCC	2 cut(s)	657, 804
Lsp1109I	GCAGC	5 cut(s)	119, 122, 220, 772, 887
LweI	GCATC	3 cut(s)	141, 718, 740
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	1 cut(s)	991
MaeIII	GTNAC	3 cut(s)	367, 589, 716
MalI	GATC	4 cut(s)	272, 374, 378, 959
MboI	GATC	4 cut(s)	270, 372, 376, 957
MboII	GAAGA	4 cut(s)	37, 92, 114, 687
MfeI	CAATTG	3 cut(s)	88, 342, 999
MhlI	GDGCHC	2 cut(s)	204, 801
Mph1103I	ATGCAT	1 cut(s)	733
MseI	TTAA	4 cut(s)	41, 131, 246, 819
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	315, 323
MunI	CAATTG	3 cut(s)	88, 342, 999
MvaI	CCWGG	2 cut(s)	315, 323
MwoI	GCNNNNNNNGC	3 cut(s)	160, 208, 977
NdeII	GATC	4 cut(s)	270, 372, 376, 957
NlaIII	CATG	2 cut(s)	488, 749
NlaIV	GGNNCC	3 cut(s)	434, 492, 800
NmuCI	GTSAC	2 cut(s)	367, 716
NsiI	ATGCAT	1 cut(s)	733
PciSI	GCTCTTC	2 cut(s)	97, 670
PfeI	GAWTC	3 cut(s)	392, 559, 774
PkrI	GCNGC	6 cut(s)	109, 112, 127, 210, 787, 877
Ple19I	CGATCG	1 cut(s)	375
PshBI	ATTAAT	3 cut(s)	131, 246, 819
PsiI	TTATAA	1 cut(s)	1061
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	313, 321
PspGI	CCWGG	2 cut(s)	313, 321
PspN4I	GGNNCC	3 cut(s)	434, 492, 800
PspPI	GGNCC	2 cut(s)	491, 895
PvuI	CGATCG	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	3 cut(s)	58, 886, 1066
RsaNI	GTAC	3 cut(s)	57, 885, 1065
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	2 cut(s)	97, 670
SaqAI	TTAA	4 cut(s)	41, 131, 246, 819
SatI	GCNGC	6 cut(s)	108, 111, 126, 209, 786, 876
Sau3AI	GATC	4 cut(s)	270, 372, 376, 957
Sau96I	GGNCC	2 cut(s)	491, 895
ScrFI	CCNGG	2 cut(s)	315, 323
SduI	GDGCHC	2 cut(s)	204, 801
SfaNI	GCATC	3 cut(s)	141, 718, 740
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	13, 639
SmoI	CTYRAG	2 cut(s)	13, 639
SsiI	CCGC	2 cut(s)	125, 916
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	313, 321
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	1 cut(s)	994
TaqI	TCGA	2 cut(s)	375, 770
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	392, 559, 774
Tru1I	TTAA	4 cut(s)	41, 131, 246, 819
Tru9I	TTAA	4 cut(s)	41, 131, 246, 819
TscAI	CASTG	3 cut(s)	202, 475, 799
TseFI	GTSAC	2 cut(s)	367, 716
TseI	GCWGC	5 cut(s)	107, 110, 208, 785, 875
Tsp45I	GTSAC	2 cut(s)	367, 716
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	3 cut(s)	202, 475, 799
VpaK11BI	GGWCC	1 cut(s)	491
VspI	ATTAAT	3 cut(s)	131, 246, 819
XapI	RAATTY	1 cut(s)	697
XspI	CTAG	1 cut(s)	384
ZraI	GACGTC	1 cut(s)	992
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.