Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000540.1

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

139565 .. 140244

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000540.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgccgtcgaagttcatggcggagtggaagggggttcagcaccagtggtggcccgtgcggcgttgcctagcgtcggtggctaatgaggattcaaaggtaggatggctgatgtttgctgtgttactattacccaattcctcttcttctgagagcaccaaagtctctgtggatttgtactacgaaacgcttggtcatgttgttaaacatttgaacgagctcttcgacaccgaactcatctccgccgttgacctgaatctggtcccctacggcaacgccaagctcggaaccaacgacaccatcacttgccagcttggcgaggcggtgaccggaagtcgaagaaaacctgacagtagaggcgttgaagatttgaggagagcttgtggaggctgggatttatgccatgcatcgatcctgcctgggcttgagtcaccgttgacccgtctttcatttggtggtggcggtgttttgggtggcggccggacgccgcaccttctggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

166

Amino Acids

18.09

Weight (kDa)

6.2

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	20, 58, 240, 320, 459, 474, 485
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	73, 256
AgsI	TTSAA	3 cut(s)	93, 211, 362
AhdI	GACNNNNNGTC	1 cut(s)	330
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	4 cut(s)	217, 280, 310, 377
AluI	AGCT	4 cut(s)	217, 280, 310, 377
Alw21I	GWGCWC	2 cut(s)	155, 219
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	2 cut(s)	50, 475
AspS9I	GGNCC	2 cut(s)	51, 259
AsuHPI	GGTGA	2 cut(s)	334, 420
AvaII	GGWCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	155, 219
BccI	CCATC	2 cut(s)	96, 305
BceAI	ACGGC	2 cut(s)	227, 283
BciT130I	CCWGG	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	68
BglI	GCCNNNNNGGC	2 cut(s)	58, 312
BisI	GCNGC	3 cut(s)	59, 475, 485
BlsI	GCNGC	3 cut(s)	60, 476, 486
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	259
BmeRI	GACNNNNNGTC	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	51, 259
BmiI	GGNNCC	2 cut(s)	261, 286
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 256
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	417
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	73, 256
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	385
BseX3I	CGGCCG	1 cut(s)	475
BseYI	CCCAGC	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	2 cut(s)	52, 477
BshVI	ATCGAT	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	2 cut(s)	155, 219
BsiSI	CCGG	2 cut(s)	327, 478
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	73, 256
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	52, 477
Bsp1286I	GDGCHC	2 cut(s)	155, 219
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	7 cut(s)	20, 58, 240, 320, 459, 474, 485
BspANI	GGCC	2 cut(s)	52, 477
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	261, 286
BspPI	GGATC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	1 cut(s)	408
BssNI	GRCGYC	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	350, 432
Bst6I	CTCTTC	2 cut(s)	145, 224
BstACI	GRCGYC	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	408
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 77, 312
BstNI	CCWGG	1 cut(s)	417
BstPI	GGTNACC	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	415
BstZI	CGGCCG	1 cut(s)	475
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	52, 477
BsuTUI	ATCGAT	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	51, 259
ClaI	ATCGAT	1 cut(s)	407
CseI	GACGC	2 cut(s)	60, 490
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	16, 194, 401
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	330
EaeI	YGGCCR	1 cut(s)	475
EagI	CGGCCG	1 cut(s)	475
Eam1104I	CTCTTC	2 cut(s)	145, 224
Eam1105I	GACNNNNNGTC	1 cut(s)	330
EarI	CTCTTC	2 cut(s)	145, 224
EciI	GGCGGA	2 cut(s)	35, 229
Ecl136II	GAGCTC	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	259
Eco52I	CGGCCG	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	217
Eco91I	GGTNACC	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	3 cut(s)	19, 197, 404
FaiI	YATR	4 cut(s)	17, 195, 397, 402
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	15, 193, 400
Fnu4HI	GCNGC	3 cut(s)	59, 475, 485
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	3 cut(s)	59, 475, 485
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	3 cut(s)	59, 475, 485
GsaI	CCCAGC	1 cut(s)	391
HaeIII	GGCC	2 cut(s)	52, 477
HapII	CCGG	2 cut(s)	327, 478
HgaI	GACGC	2 cut(s)	60, 490
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	3 cut(s)	19, 197, 404
HincII	GTYRAC	2 cut(s)	247, 435
HindII	GTYRAC	2 cut(s)	247, 435
HinfI	GANTC	3 cut(s)	89, 253, 425
HpaII	CCGG	2 cut(s)	327, 478
HphI	GGTGA	2 cut(s)	334, 420
Hpy166II	GTNNAC	2 cut(s)	247, 435
Hpy188I	TCNGA	2 cut(s)	148, 284
Hpy188III	TCNNGA	1 cut(s)	494
Hpy8I	GTNNAC	2 cut(s)	247, 435
Hpy99I	CGWCG	2 cut(s)	10, 76
HpyAV	CCTTC	2 cut(s)	22, 500
HpyCH4III	ACNGT	2 cut(s)	350, 432
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 77, 312
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	3 cut(s)	19, 197, 404
Kzo9I	GATC	1 cut(s)	408
LguI	GCTCTTC	1 cut(s)	224
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	3 cut(s)	120, 322, 426
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	5 cut(s)	132, 135, 211, 348, 374
MhlI	GDGCHC	2 cut(s)	155, 219
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	6 cut(s)	79, 148, 310, 347, 363, 377
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	1 cut(s)	201
MspI	CCGG	2 cut(s)	327, 478
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	58, 77, 312
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	3 cut(s)	19, 197, 404
NlaIV	GGNNCC	2 cut(s)	261, 286
NmuCI	GTSAC	2 cut(s)	322, 426
NsiI	ATGCAT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 288
PfeI	GAWTC	2 cut(s)	89, 253
PkrI	GCNGC	3 cut(s)	60, 476, 486
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	415
PspEI	GGTNACC	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	261, 286
PspPI	GGNCC	2 cut(s)	51, 259
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	59, 475, 485
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	51, 259
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	2 cut(s)	155, 219
SetI	ASST	8 cut(s)	99, 219, 252, 282, 312, 346, 379, 492
SfaNI	GCATC	1 cut(s)	413
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	7 cut(s)	20, 58, 240, 320, 459, 474, 485
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	350, 432
TaqI	TCGA	4 cut(s)	8, 222, 334, 407
TasI	AATT	1 cut(s)	133
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	3 cut(s)	61, 477, 487
TfiI	GAWTC	2 cut(s)	89, 253
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	2 cut(s)	322, 426
Tsp45I	GTSAC	2 cut(s)	322, 426
TspDTI	ATGAA	2 cut(s)	4, 435
TspRI	CASTG	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.