Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

13940167 .. 13940574

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0171600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGCCTTCTCAAAAACCTCCCTCCTGTTCTGTACATCCTATGGATGAGTTCCCTCTACTTTGCTGCATCAACCGTTAATGCAGCTACATTCAATATCCGAAACAACTGTCCCTTCACTGTTTGGGCTGCTGCTGTGCCGGGCGGCGGTAGACAACTCGGCAATGGCCAAACATGGATACTAAATGTAAACGCCGGAACTAAAGGGGCTCGCATTTGGGCCCGAACAAATTGCAACTTCGATGGAGCAGGACGTGGAAGATGCCAGACTGGTGACTGTGGCGGTCTCCTCCAATGTCAAGGCTATGGTCAACCCCCAAACACCCTCGCCGAATATGCACTGAATCAATACAACAACTTGGATTTCTTTGATATCTCTTTGGTTGATGGGTTCAATGTCCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

135

Amino Acids

14.7

Weight (kDa)

8.33

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	35 - 133	3.9e-29	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	3 cut(s)	144, 147, 282
AcoI	YGGCCR	1 cut(s)	166
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	94, 394
AjiI	CACGTC	1 cut(s)	254
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	166, 219
ApaI	GGGCCC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	65, 83, 128, 131
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspS9I	GGNCC	2 cut(s)	219, 220
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	168
BanII	GRGCYC	2 cut(s)	211, 223
BbvI	GCAGC	4 cut(s)	52, 95, 115, 118
BccI	CCATC	2 cut(s)	236, 380
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciVI	GTATCC	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	171
BisI	GCNGC	5 cut(s)	66, 84, 129, 132, 145
BlsI	GCNGC	5 cut(s)	67, 85, 130, 133, 146
Bme1390I	CCNGG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	219, 220
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	77, 251
BpuMI	CCSGG	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	36, 51
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	4 cut(s)	52, 95, 115, 118
BshFI	GGCC	2 cut(s)	168, 221
BsiSI	CCGG	2 cut(s)	140, 195
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	168, 221
Bso31I	GGTCTC	1 cut(s)	290
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	211, 223
Bsp1407I	TGTACA	1 cut(s)	33
BspACI	CCGC	3 cut(s)	144, 147, 282
BspANI	GGCC	2 cut(s)	168, 221
BspLI	GGNNCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	274
Bst4CI	ACNGT	4 cut(s)	76, 110, 121, 278
BstAUI	TGTACA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	36, 51
BstMAI	GTCTC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	4 cut(s)	52, 95, 115, 118
BsuI	GTATCC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	168, 221
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	36, 51
BtsIMutI	CAGTG	2 cut(s)	117, 338
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	219, 220
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	7 cut(s)	6, 86, 128, 168, 209, 221, 303
CviKI_1	RGCY	7 cut(s)	6, 86, 128, 168, 209, 221, 303
CviQI	GTAC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	211, 223
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	373
EcoT38I	GRGCYC	2 cut(s)	211, 223
FaeI	CATG	1 cut(s)	177
FaiI	YATR	4 cut(s)	43, 175, 306, 336
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	5 cut(s)	66, 84, 129, 132, 145
FokI	GGATG	2 cut(s)	23, 58
FriOI	GRGCYC	2 cut(s)	211, 223
Fsp4HI	GCNGC	5 cut(s)	66, 84, 129, 132, 145
FspBI	CTAG	1 cut(s)	406
GluI	GCNGC	5 cut(s)	66, 84, 129, 132, 145
HaeIII	GGCC	2 cut(s)	168, 221
HapII	CCGG	2 cut(s)	140, 195
Hin1II	CATG	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	2 cut(s)	140, 195
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	4 cut(s)	152, 190, 311, 400
Hpy188I	TCNGA	1 cut(s)	101
Hpy8I	GTNNAC	4 cut(s)	152, 190, 311, 400
HpyAV	CCTTC	2 cut(s)	17, 124
HpyCH4III	ACNGT	4 cut(s)	76, 110, 121, 278
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	4 cut(s)	68, 83, 234, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	6 cut(s)	39, 153, 208, 234, 255, 278
Lsp1109I	GCAGC	4 cut(s)	52, 95, 115, 118
LweI	GCATC	2 cut(s)	77, 251
MaeI	CTAG	1 cut(s)	406
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	272
MboII	GAAGA	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	211, 223
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	1 cut(s)	229
MluNI	TGGCCA	1 cut(s)	168
MnlI	CCTC	5 cut(s)	29, 33, 65, 299, 335
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	2 cut(s)	140, 195
MspR9I	CCNGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	141
NlaIII	CATG	1 cut(s)	177
NlaIV	GGNNCC	1 cut(s)	221
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	5 cut(s)	67, 85, 130, 133, 146
PspN4I	GGNNCC	1 cut(s)	221
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	219, 220
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	5 cut(s)	66, 84, 129, 132, 145
Sau96I	GGNCC	2 cut(s)	219, 220
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	211, 223
SetI	ASST	3 cut(s)	21, 88, 256
SfaNI	GCATC	2 cut(s)	77, 251
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	144, 147, 282
SspMI	CTAG	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	4 cut(s)	76, 110, 121, 278
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	124, 345
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	4 cut(s)	65, 83, 128, 131
Tsp45I	GTSAC	1 cut(s)	272
TspRI	CASTG	2 cut(s)	124, 345
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.