Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

4188058 .. 4188732

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCTCCTCATCTGTTCCTACTTTCCTCCACCTCCTCCTCCTCCTCTGCTCCGTTTCGCTCTCTCCAACCTACGCCGCTTATTCCGAGAGCAGCAGCAGCAGCAGCAGCAACAAAGTCAGAGTGGAGCTCTACTACGAAACGCTGTGTCCCGACAGTTATCAATTCATTGTTAATGATCTGATCAAGCTCTTCGAAACCGGAATCAACTCCATCACCGATCTGAAGCTCTATCCCTACGGCAACGCCAGGATTGGATCCAACAGCACCATCACTTGCCAGTTTTCATGGAATGACCAAAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

103

Amino Acids

11.34

Weight (kDa)

4.64

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	2 cut(s)	252, 265
AcuI	CTGAAG	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	3 cut(s)	130, 190, 229
AluI	AGCT	3 cut(s)	130, 190, 229
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	252, 265
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	6 cut(s)	93, 96, 99, 102, 105, 108
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	6 cut(s)	105, 108, 111, 114, 117, 120
BccI	CCATC	2 cut(s)	221, 278
BceAI	ACGGC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	250
BclI	TGATCA	1 cut(s)	183
BisI	GCNGC	7 cut(s)	78, 94, 97, 100, 103, 106, 109
BlsI	GCNGC	7 cut(s)	79, 95, 98, 101, 104, 107, 110
Bme1390I	CCNGG	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
Bpu14I	TTCGAA	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	4 cut(s)	26, 29, 32, 35
BseXI	GCAGC	6 cut(s)	105, 108, 111, 114, 117, 120
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	178, 183, 220, 257
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	252, 265
BspQI	GCTCTTC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	178, 183, 220, 257
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	195
BstKTI	GATC	4 cut(s)	181, 186, 223, 260
BstMBI	GATC	4 cut(s)	178, 183, 220, 257
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 102, 105, 108
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstV1I	GCAGC	6 cut(s)	105, 108, 111, 114, 117, 120
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	5
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	4 cut(s)	5, 130, 190, 229
CviKI_1	RGCY	4 cut(s)	5, 130, 190, 229
DpnI	GATC	4 cut(s)	180, 185, 222, 259
DpnII	GATC	4 cut(s)	178, 183, 220, 257
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	1 cut(s)	291
FaiI	YATR	1 cut(s)	289
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	287
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	7 cut(s)	78, 94, 97, 100, 103, 106, 109
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	7 cut(s)	78, 94, 97, 100, 103, 106, 109
GluI	GCNGC	7 cut(s)	78, 94, 97, 100, 103, 106, 109
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	1 cut(s)	291
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	88, 122, 183, 225
Hpy188III	TCNNGA	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 102, 105, 108
Hsp92II	CATG	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	178, 183, 220, 257
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	56, 127
LpnPI	CCDG	4 cut(s)	214, 235, 262, 293
Lsp1109I	GCAGC	6 cut(s)	105, 108, 111, 114, 117, 120
MalI	GATC	4 cut(s)	180, 185, 222, 259
MboI	GATC	4 cut(s)	178, 183, 220, 257
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	92, 285
MnlI	CCTC	8 cut(s)	16, 19, 38, 44, 47, 50, 53, 56
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	99, 102, 105, 108
NdeII	GATC	4 cut(s)	178, 183, 220, 257
NlaIII	CATG	1 cut(s)	291
NlaIV	GGNNCC	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	7 cut(s)	79, 95, 98, 101, 104, 107, 110
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	7 cut(s)	78, 94, 97, 100, 103, 106, 109
Sau3AI	GATC	4 cut(s)	178, 183, 220, 257
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	5 cut(s)	36, 74, 132, 192, 231
SfuI	TTCGAA	1 cut(s)	195
SgeI	CNNG	9 cut(s)	100, 164, 199, 213, 261, 262, 288, 292, 300
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	164
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	6 cut(s)	93, 96, 99, 102, 105, 108
TspDTI	ATGAA	2 cut(s)	157, 276
TspGWI	ACGGA	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.