FvH4_6g03531
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001585
Physical Location & Seq
Forward (+)
1950812 .. 1951775
964 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03531.t1

Sequence Viewer

Length: 306 bp
ATGGGTTTTCCCAAACTCTTCCTCCTCTTCTTCCTCTTGGTCTCAAACCCATCTCGATCTTATGCTGCAGAGAATGTGAGTGTGACTCTCTGCTACGAGACACTCTGTCCTTATTGTGCCGATTTCATTGTGAACCATTTGACCAAGATCTTTGACAATGGGCTCATATCCGTCATCAACCTCCGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCTGATGGCTCTTTCGCCTGCCAGAATCGACATTTTAGATTCATCCACTGCGTTGAGCAGCTCACATTGCACAACAAGCACGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

102

Amino Acids

11.67

Weight (kDa)

7.69

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 28 - 81 1.2e-12 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 187
AhdI GACNNNNNGTC 1 cut(s) 105
AjuI GAANNNNNNNTTGG 2 cut(s) 178, 210
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 46, 92
ApeKI GCWGC 2 cut(s) 65, 274
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 52, 286
BccI CCATC 2 cut(s) 58, 215
BcoDI GTCTC 2 cut(s) 46, 92
BfmI CTRYAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 147
BisI GCNGC 2 cut(s) 66, 275
BlsI GCNGC 2 cut(s) 67, 276
Bme18I GGWCC 1 cut(s) 190
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 52, 286
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 46, 92
BsmFI GGGAC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 56, 147
BspLI GGNNCC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 2 cut(s) 56, 147
BssT1I CCWWGG 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 23, 32
BstC8I GCNNGC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 2 cut(s) 59, 150
BstMAI GTCTC 2 cut(s) 46, 92
BstMBI GATC 2 cut(s) 56, 147
BstMWI GCNNNNNNNGC 2 cut(s) 283, 292
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 52, 286
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BtsCI GGATG 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 190
CviJI RGCY 4 cut(s) 163, 211, 225, 277
CviKI_1 RGCY 4 cut(s) 163, 211, 225, 277
DpnI GATC 2 cut(s) 58, 149
DpnII GATC 2 cut(s) 56, 147
DriI GACNNNNNGTC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 23, 32
Eam1105I GACNNNNNGTC 1 cut(s) 105
EarI CTCTTC 2 cut(s) 23, 32
Eco130I CCWWGG 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 194
FaiI YATR 2 cut(s) 63, 167
FaqI GGGAC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 66, 275
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 2 cut(s) 66, 275
GluI GCNGC 2 cut(s) 66, 275
HinfI GANTC 3 cut(s) 85, 241, 255
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 185, 220
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 68, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 292
Kzo9I GATC 2 cut(s) 56, 147
LpnPI CCDG 2 cut(s) 247, 251
Lsp1109I GCAGC 2 cut(s) 52, 286
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 58, 149
MboI GATC 2 cut(s) 56, 147
MboII GAAGA 3 cut(s) 10, 19, 22
MflI RGATCY 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 4 cut(s) 32, 35, 44, 191
MwoI GCNNNNNNNGC 2 cut(s) 283, 292
NdeII GATC 2 cut(s) 56, 147
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 241, 255
PkrI GCNGC 2 cut(s) 67, 276
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 70
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 2 cut(s) 66, 275
Sau3AI GATC 2 cut(s) 56, 147
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 165
SetI ASST 2 cut(s) 183, 279
SfcI CTRYAG 1 cut(s) 66
SgeI CNNG 8 cut(s) 49, 66, 109, 157, 207, 219, 246, 250
SinI GGWCC 1 cut(s) 190
Sse9I AATT 1 cut(s) 214
StyI CCWWGG 1 cut(s) 194
TaqI TCGA 2 cut(s) 55, 244
TasI AATT 1 cut(s) 214
TfiI GAWTC 2 cut(s) 241, 255
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 65, 274
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 115, 247
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.