Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

34130014 .. 34131566

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTTTTACCAGACTCTTCCTCTTCTTCCTCCTTTTGGTCTTAAACCCATCTCAATCTTATGCTGCTGAGAATGTGAGTGTGACTCTCTACTACGAGACTCTCTGTCCTTATTGTGCCGATTTCATAGTGAACCATTTGGCCGAGATCTTCCAGAATGGGCTCATCTCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCCGACGGCTCCTTCGCCTGCCAGCATGGAACAGATGAATGCTTGATCAACACAATTGAGGCCTGCACCATCACCATCTATCCTAATGTGAATCGGCATTTTACATTCATCCACTGCGTTGAGAGGCTCACGTTGCAGAACAAACACAGTAAATGGGCCGATTGCTTTGAAATGTCGAAGTTGGGGACTGTACCCATCGATTGCTACAACAGTGGATATGGAAATCAGATTGAAACAAAATATGCAAAGGAAACTGCTCAGCTTAATCCACCACATAGATTTGTGCCGTGGCTGGTTGTCAATAATAAACCACTTGCAGAGGACTACGGAAATTTTATGGCCTATATCTGTAAGGCATACAAAGGAAAATCTCCAGAAGCTTGCAGATCCATTCGCTACAAGACTGAATCAATTGGAAATGAAAAATCTATTCCTCAAGTTTGCCTAGCAGAACAACGAAGAAACTCTACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

231

Amino Acids

26.21

Weight (kDa)

6.97

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	28 - 129	1.9e-31	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	597
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	547
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	386, 449
AhdI	GACNNNNNGTC	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	2 cut(s)	478, 596
AluI	AGCT	2 cut(s)	478, 596
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	597
AoxI	GGCC	4 cut(s)	141, 276, 372, 555
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	547
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AspS9I	GGNCC	2 cut(s)	190, 372
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	165
BarI	GAAGNNNNNNTAC	1 cut(s)	667
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	5 cut(s)	58, 179, 293, 299, 419
BceAI	ACGGC	2 cut(s)	238, 487
BclI	TGATCA	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	662
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	66
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	190
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	190, 372
BmiI	GGNNCC	2 cut(s)	192, 226
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpmI	CTGGAG	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	636
Bsa29I	ATCGAT	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	194, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	194, 503
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	3 cut(s)	60, 196, 488
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	4 cut(s)	143, 278, 374, 557
BshVI	ATCGAT	1 cut(s)	414
BslFI	GGGAC	2 cut(s)	176, 415
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	176, 415
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	4 cut(s)	143, 278, 374, 557
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	147, 261, 602
Bsp1720I	GCTNAGC	1 cut(s)	474
BspANI	GGCC	4 cut(s)	143, 278, 374, 557
BspCNI	CTCAG	3 cut(s)	61, 195, 487
BspDI	ATCGAT	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	192, 226
BspPI	GGATC	1 cut(s)	597
BssECI	CCNNGG	2 cut(s)	194, 503
BssMI	GATC	3 cut(s)	147, 261, 602
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	365, 406, 428
Bst6I	CTCTTC	2 cut(s)	23, 29
BstC8I	GCNNGC	4 cut(s)	235, 239, 280, 598
BstDEI	CTNAG	3 cut(s)	69, 182, 474
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	3 cut(s)	150, 264, 605
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	147, 261, 602
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	147, 602
BstYI	RGATCY	2 cut(s)	147, 602
Bsu15I	ATCGAT	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	143, 278, 374, 557
BsuTUI	ATCGAT	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	328, 433
Cac8I	GCNNGC	4 cut(s)	235, 239, 280, 598
Cfr13I	GGNCC	2 cut(s)	190, 372
ClaI	ATCGAT	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	3 cut(s)	69, 182, 474
DpnI	GATC	3 cut(s)	149, 263, 604
DpnII	GATC	3 cut(s)	147, 261, 602
DriI	GACNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	23, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	2 cut(s)	23, 29
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	1 cut(s)	245
FaiI	YATR	9 cut(s)	63, 128, 243, 435, 459, 492, 554, 561, 574
FaqI	GGGAC	2 cut(s)	176, 415
FatI	CATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	4 cut(s)	143, 278, 374, 557
Hin1II	CATG	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	5 cut(s)	15, 85, 100, 307, 623
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	185, 220, 444
Hpy188III	TCNNGA	2 cut(s)	154, 590
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	3 cut(s)	365, 406, 428
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	5 cut(s)	282, 352, 461, 533, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	3 cut(s)	69, 182, 474
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	147, 261, 602
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	7 cut(s)	25, 167, 247, 251, 292, 494, 603
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	149, 263, 604
MboI	GATC	3 cut(s)	147, 261, 602
MboII	GAAGA	5 cut(s)	10, 16, 19, 142, 687
MfeI	CAATTG	2 cut(s)	270, 627
MflI	RGATCY	2 cut(s)	147, 602
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	4 cut(s)	214, 270, 547, 627
MlyI	GAGTC	3 cut(s)	9, 79, 94
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	6 cut(s)	32, 41, 268, 333, 529, 660
MseI	TTAA	3 cut(s)	44, 480, 691
MunI	CAATTG	2 cut(s)	270, 627
Mva1269I	GAATGC	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	3 cut(s)	147, 261, 602
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	192, 226
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	307, 623
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	3 cut(s)	9, 79, 94
PpsI	GAGTC	3 cut(s)	9, 79, 94
PspN4I	GGNNCC	2 cut(s)	192, 226
PspPI	GGNCC	2 cut(s)	190, 372
PsuI	RGATCY	2 cut(s)	147, 602
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	44, 480, 691
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	3 cut(s)	147, 261, 602
Sau96I	GGNCC	2 cut(s)	190, 372
SchI	GAGTC	3 cut(s)	9, 79, 94
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	3 cut(s)	350, 480, 598
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	4 cut(s)	214, 270, 547, 627
SseBI	AGGCCT	1 cut(s)	278
SspMI	CTAG	1 cut(s)	662
StuI	AGGCCT	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	3 cut(s)	365, 406, 428
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	392, 414
TasI	AATT	4 cut(s)	214, 270, 547, 627
TfiI	GAWTC	2 cut(s)	307, 623
Tru1I	TTAA	3 cut(s)	44, 480, 691
Tru9I	TTAA	3 cut(s)	44, 480, 691
TscAI	CASTG	2 cut(s)	335, 433
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	4 cut(s)	115, 267, 313, 651
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	2 cut(s)	335, 433
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	547
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.