Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

33838690 .. 33840451

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGTTTTACCAGACTCTTCCTCTTCTTCCTCCTCCTTTTGGTCTTAAACCCATCTCAATCCTATGCTGCTGAGAATGTGAGTGTGACTCTCTACTACGAGACTCTGTGTCCTTATTGTGCCGATTTCATAGTGAACCATTTGGCCGAGATCTTCCAGAATGGGCTCATCTCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCCGACGGCTCCTTCGCCTGCCAGCATGGAACAGATGAATGCTTGATCAACACAATTGAGGCCTGCACCATCACCATCTATCCTAATGTGAATCGGCATTTTACATTCATCCACTGCGTTGAGAGGCTCACGTTGCAGAACAAACACAGTAAATGGGCCGATTGCTTTGAAATGTCGAAGTTGGGGACTGTACCTATCGATTGCTACAACAGTGGATATGGCAATCAGATTGAAACAAAATATGCAAAGGAAACTGCTCAGCTTAATCCACCACATAGATTTGTGCCGTGGCTGGTTGTCAATAATAAACCACTTGCAGAGGACTACGGAAATTTTATGGCCTATATCTGTAAGGCATACAAAGGAAAATCTCCAGAAGCTTGCAGATCCATTCGCTACAAGACTGAATCAATTGGAAATGAAAAATCGATCCCTCAAGTTTGCCTAGCAGAACAACGAAGAAACTCTACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

231

Amino Acids

26.32

Weight (kDa)

6.97

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	29 - 130	1.9e-31	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	600, 643
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	389, 452
AhdI	GACNNNNNGTC	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AluBI	AGCT	2 cut(s)	481, 599
AluI	AGCT	2 cut(s)	481, 599
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	600, 643
AoxI	GGCC	4 cut(s)	144, 279, 375, 558
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	550
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspS9I	GGNCC	2 cut(s)	193, 375
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	1 cut(s)	670
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	4 cut(s)	61, 182, 296, 302
BceAI	ACGGC	2 cut(s)	241, 490
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	665
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	193
BmeRI	GACNNNNNGTC	1 cut(s)	108
BmgT120I	GGNCC	2 cut(s)	193, 375
BmiI	GGNNCC	2 cut(s)	195, 229
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	576
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	639
Bsa29I	ATCGAT	2 cut(s)	417, 647
BsaJI	CCNNGG	2 cut(s)	197, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseCI	ATCGAT	2 cut(s)	417, 647
BseDI	CCNNGG	2 cut(s)	197, 506
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	3 cut(s)	63, 199, 491
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	4 cut(s)	146, 281, 377, 560
BshVI	ATCGAT	2 cut(s)	417, 647
BslFI	GGGAC	2 cut(s)	179, 418
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	179, 418
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	4 cut(s)	146, 281, 377, 560
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	150, 264, 605, 648
Bsp1720I	GCTNAGC	1 cut(s)	477
BspANI	GGCC	4 cut(s)	146, 281, 377, 560
BspCNI	CTCAG	3 cut(s)	64, 198, 490
BspDI	ATCGAT	2 cut(s)	417, 647
BspLI	GGNNCC	2 cut(s)	195, 229
BspPI	GGATC	2 cut(s)	600, 643
BssECI	CCNNGG	2 cut(s)	197, 506
BssMI	GATC	4 cut(s)	150, 264, 605, 648
BssT1I	CCWWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	368, 409, 431
Bst6I	CTCTTC	2 cut(s)	23, 29
BstC8I	GCNNGC	4 cut(s)	238, 242, 283, 601
BstDEI	CTNAG	3 cut(s)	72, 185, 477
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	4 cut(s)	153, 267, 608, 651
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	4 cut(s)	150, 264, 605, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	2 cut(s)	150, 605
BstYI	RGATCY	2 cut(s)	150, 605
Bsu15I	ATCGAT	2 cut(s)	417, 647
BsuRI	GGCC	4 cut(s)	146, 281, 377, 560
BsuTUI	ATCGAT	2 cut(s)	417, 647
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	331, 436
Cac8I	GCNNGC	4 cut(s)	238, 242, 283, 601
Cfr13I	GGNCC	2 cut(s)	193, 375
ClaI	ATCGAT	2 cut(s)	417, 647
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	1 cut(s)	245
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	3 cut(s)	72, 185, 477
DpnI	GATC	4 cut(s)	152, 266, 607, 650
DpnII	GATC	4 cut(s)	150, 264, 605, 648
DriI	GACNNNNNGTC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	23, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	108
EarI	CTCTTC	2 cut(s)	23, 29
Eco130I	CCWWGG	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	248
FaiI	YATR	9 cut(s)	66, 131, 246, 438, 462, 495, 557, 564, 577
FaqI	GGGAC	2 cut(s)	179, 418
FatI	CATG	1 cut(s)	244
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	665
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	4 cut(s)	146, 281, 377, 560
Hin1II	CATG	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	5 cut(s)	15, 88, 103, 310, 626
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	188, 223, 447
Hpy188III	TCNNGA	2 cut(s)	157, 593
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	3 cut(s)	368, 409, 431
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	5 cut(s)	285, 355, 464, 536, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	3 cut(s)	72, 185, 477
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	150, 264, 605, 648
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	25, 170, 250, 254, 295, 497, 606
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	152, 266, 607, 650
MboI	GATC	4 cut(s)	150, 264, 605, 648
MboII	GAAGA	5 cut(s)	10, 16, 19, 145, 690
MfeI	CAATTG	2 cut(s)	273, 630
MflI	RGATCY	2 cut(s)	150, 605
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	4 cut(s)	217, 273, 550, 630
MlyI	GAGTC	3 cut(s)	9, 82, 97
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	32, 41, 44, 271, 336, 532, 663
MseI	TTAA	3 cut(s)	47, 483, 694
MunI	CAATTG	2 cut(s)	273, 630
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	4 cut(s)	150, 264, 605, 648
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	195, 229
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	281
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	310, 626
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	3 cut(s)	9, 82, 97
PpsI	GAGTC	3 cut(s)	9, 82, 97
PspN4I	GGNNCC	2 cut(s)	195, 229
PspPI	GGNCC	2 cut(s)	193, 375
PsuI	RGATCY	2 cut(s)	150, 605
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SaqAI	TTAA	3 cut(s)	47, 483, 694
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	4 cut(s)	150, 264, 605, 648
Sau96I	GGNCC	2 cut(s)	193, 375
SchI	GAGTC	3 cut(s)	9, 82, 97
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	4 cut(s)	353, 415, 483, 601
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
Sse9I	AATT	4 cut(s)	217, 273, 550, 630
SseBI	AGGCCT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	665
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	3 cut(s)	368, 409, 431
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	3 cut(s)	395, 417, 647
TasI	AATT	4 cut(s)	217, 273, 550, 630
TfiI	GAWTC	2 cut(s)	310, 626
Tru1I	TTAA	3 cut(s)	47, 483, 694
Tru9I	TTAA	3 cut(s)	47, 483, 694
TscAI	CASTG	2 cut(s)	338, 436
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	4 cut(s)	118, 270, 316, 654
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	2 cut(s)	338, 436
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	550
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.