Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

43449885 .. 43450839

Gene Structure 955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG356800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGTTTTACCAAACTCTTCCTCTTCTTCTTCTTCTTCTTCTTCCTAGTCTCAAACCCATCTCAATCTTATGCTGCTGAGAATGTGAGCGTGACTCTCTACTACGAGACTCTGTGTCCTTATTATGCCGATTTCATAGTGAACCATTTGGCCAAGATCTTCCAGAATGGGCTCATCTCCATAGTCAATCTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCTGATGGCTCCTTTGCCTGCCAGCATGGAAGAGATGAATGCTTGCTGAACACAATTGAGGCCTGCACCATCACCATCTATCCTGATGTGGTAAAGCTTATCATACAGACTTCAAACACTTTGTTCCAAACATGTACAGATGACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

124

Amino Acids

14.17

Weight (kDa)

4.59

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	31 - 106	8.1e-24	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	150
AfaI	GTAC	1 cut(s)	361
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	339
AhdI	GACNNNNNGTC	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	55, 101
AoxI	GGCC	2 cut(s)	150, 285
ApeKI	GCWGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	4 cut(s)	67, 224, 302, 308
BcoDI	GTCTC	2 cut(s)	55, 101
BfaI	CTAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	199
BmeRI	GACNNNNNGTC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	201, 235
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BsaJI	CCNNGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	69, 205
BseXI	GCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	152, 287
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	55, 101
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	152, 287
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	152, 287
BspCNI	CTCAG	2 cut(s)	70, 204
BspLI	GGNNCC	2 cut(s)	201, 235
BsrGI	TGTACA	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	203
Bst6I	CTCTTC	3 cut(s)	23, 29, 250
BstAUI	TGTACA	1 cut(s)	359
BstC8I	GCNNGC	4 cut(s)	244, 248, 269, 289
BstDEI	CTNAG	2 cut(s)	78, 191
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	2 cut(s)	55, 101
BstMBI	GATC	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	152, 287
Cac8I	GCNNGC	4 cut(s)	244, 248, 269, 289
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	2 cut(s)	251, 357
CviJI	RGCY	6 cut(s)	152, 172, 220, 234, 287, 322
CviKI_1	RGCY	6 cut(s)	152, 172, 220, 234, 287, 322
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	2 cut(s)	78, 191
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
DriI	GACNNNNNGTC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	3 cut(s)	23, 29, 250
Eam1105I	GACNNNNNGTC	1 cut(s)	114
EarI	CTCTTC	3 cut(s)	23, 29, 250
Eco130I	CCWWGG	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	2 cut(s)	254, 360
FaiI	YATR	7 cut(s)	72, 126, 137, 182, 252, 329, 358
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	250, 356
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	152, 287
Hin1II	CATG	2 cut(s)	254, 360
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	94, 109
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	194, 229
Hpy188III	TCNNGA	2 cut(s)	163, 308
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	291
HpyF3I	CTNAG	2 cut(s)	78, 191
Hsp92II	CATG	2 cut(s)	254, 360
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	176, 256, 260, 301, 321
Lsp1109I	GCAGC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	2 cut(s)	223, 279
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	88, 103
MnlI	CCTC	2 cut(s)	32, 277
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	152
MunI	CAATTG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	254, 360
NlaIV	GGNNCC	2 cut(s)	201, 235
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	287
PciI	ACATGT	1 cut(s)	356
PctI	GAATGC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	88, 103
PpsI	GAGTC	2 cut(s)	88, 103
PscI	ACATGT	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	201, 235
PspPI	GGNCC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	88, 103
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	1 cut(s)	324
SinI	GGWCC	1 cut(s)	199
Sse9I	AATT	2 cut(s)	223, 279
SseBI	AGGCCT	1 cut(s)	287
SspMI	CTAG	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	203
TasI	AATT	2 cut(s)	223, 279
TatI	WGTACW	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	124, 276
VpaK11BI	GGWCC	1 cut(s)	199
XceI	RCATGY	1 cut(s)	360
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.