Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

77947189 .. 77947839

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG496100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCTTCTAAATATTCCTCACTACTAGCACACCTCCTCTTGTTCATTTTCTCTGTGTTACTATTACCCAATTCCTCTTCTTCTGAGAGCACCAAAGTCTCTGTGGATTTGTACTACGAAACCCTTTGTCCTGATTGCTCTGATTTCATTGTTAAACATCTGATCAAGCTCTTCGACACCGGACTCATCTCCGCCGTTGACCTGAATCTCGTCCCATACGGCAACGCCAGGCTCGGAACCAACGACACCATCACTTGCCAGGAATTCCCAACTGGCGAAACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

95

Amino Acids

10.42

Weight (kDa)

4.59

Isoelectric Point (pI)

13.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	35 - 88	1.8e-13	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	263
AfaI	GTAC	1 cut(s)	113
AjnI	CCWGG	2 cut(s)	227, 258
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	92
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	2 cut(s)	179, 235
BciT130I	CCWGG	2 cut(s)	229, 260
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	229, 260
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	229, 260
BsaWI	WCCGGW	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	229, 260
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	229, 260
Bst6I	CTCTTC	2 cut(s)	82, 176
BstDEI	CTNAG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	162
BstNI	CCWGG	2 cut(s)	229, 260
BstSCI	CCNGG	2 cut(s)	227, 258
Csp6I	GTAC	1 cut(s)	112
CviJI	RGCY	3 cut(s)	5, 169, 232
CviKI_1	RGCY	3 cut(s)	5, 169, 232
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eam1104I	CTCTTC	2 cut(s)	82, 176
EarI	CTCTTC	2 cut(s)	82, 176
EciI	GGCGGA	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	227, 258
FaiI	YATR	1 cut(s)	217
FaqI	GGGAC	1 cut(s)	197
FbaI	TGATCA	1 cut(s)	162
FspBI	CTAG	1 cut(s)	26
HapII	CCGG	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	183, 205
HpaII	CCGG	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	85, 142, 162, 236
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	162
LguI	GCTCTTC	1 cut(s)	176
LpnPI	CCDG	8 cut(s)	144, 193, 214, 215, 241, 245, 258, 272
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	3 cut(s)	69, 72, 163
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	2 cut(s)	70, 263
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	4 cut(s)	28, 44, 47, 85
MseI	TTAA	1 cut(s)	153
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	229, 260
MvaI	CCWGG	2 cut(s)	229, 260
NdeII	GATC	1 cut(s)	162
NlaIV	GGNNCC	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	227, 258
PspGI	CCWGG	2 cut(s)	227, 258
PspN4I	GGNNCC	1 cut(s)	238
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	229, 260
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	3 cut(s)	36, 171, 204
Sse9I	AATT	2 cut(s)	70, 263
SsiI	CCGC	1 cut(s)	192
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	227, 258
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	70, 263
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	34, 136
XapI	RAATTY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.