Rh3AG112300
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001585
Physical Location & Seq
Forward (+)
9490972 .. 9499698
8727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG112300.1

Sequence Viewer

Length: 420 bp
ATGTATTATCTGGATTACTCAAGGAACAACTTCAGCTCTACCATACCAACTACCATTGGAGATATGCTTCTTCAAACCAGATTCTTCTATGTCGCAAGCAACAACCTTCAGGGGATAATTCCTGGATCAATATGCAATTCACTTTACCTTGAGATTCTTGATCTATCCAATAATTCCTTAAGTGTGAACCATTTGGCCAAGATCTTCCAGAATGTGCTCATCTCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCTGATTTCTGCTTCGCCTGCCAGAATGGAACAGATGAATGCTTGCTCAACACAATTGAGGCCTGCACCATCACCATCTATCCTGATGTGGTAAAGCTTATCATACAGACTTCAAACACTTTGTTCCAAACATGTACAGATGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

139

Amino Acids

15.65

Weight (kDa)

4.26

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 57 - 121 1.8e-13 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 195
AcuI CTGAAG 2 cut(s) 16, 92
AfaI GTAC 1 cut(s) 406
AflII CTTAAG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 401
AgsI TTSAA 2 cut(s) 74, 384
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 232, 264
AluBI AGCT 2 cut(s) 36, 367
AluI AGCT 2 cut(s) 36, 367
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 1 cut(s) 133
AoxI GGCC 2 cut(s) 195, 330
Asp700I GAANNNNTTC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 3 cut(s) 233, 347, 353
BciT130I CCWGG 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 178
BglII AGATCT 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 4, 170
BsaJI CCNNGG 1 cut(s) 248
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 2 cut(s) 197, 332
BsiHKAI GWGCWC 1 cut(s) 219
BslFI GGGAC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 2 cut(s) 197, 332
Bsp1286I GDGCHC 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 404
Bsp143I GATC 3 cut(s) 125, 160, 201
BspANI GGCC 2 cut(s) 197, 332
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 1 cut(s) 133
BspTI CTTAAG 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 3 cut(s) 125, 160, 201
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 178
BstAUI TGTACA 1 cut(s) 404
BstC8I GCNNGC 4 cut(s) 97, 289, 314, 334
BstDEI CTNAG 1 cut(s) 236
BstKTI GATC 3 cut(s) 128, 163, 204
BstMBI GATC 3 cut(s) 125, 160, 201
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuRI GGCC 2 cut(s) 197, 332
Cac8I GCNNGC 4 cut(s) 97, 289, 314, 334
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 405
CviAII CATG 1 cut(s) 402
CviJI RGCY 5 cut(s) 36, 197, 265, 332, 367
CviKI_1 RGCY 5 cut(s) 36, 197, 265, 332, 367
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 1 cut(s) 236
DpnI GATC 3 cut(s) 127, 162, 203
DpnII GATC 3 cut(s) 125, 160, 201
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 16, 92
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 1 cut(s) 405
FaiI YATR 6 cut(s) 44, 65, 90, 133, 374, 403
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 401
HaeIII GGCC 2 cut(s) 197, 332
Hin1II CATG 1 cut(s) 405
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 2 cut(s) 81, 154
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 239, 274
Hpy188III TCNNGA 4 cut(s) 11, 158, 208, 353
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 135, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 1 cut(s) 405
Kzo9I GATC 3 cut(s) 125, 160, 201
LpnPI CCDG 9 cut(s) 91, 95, 108, 135, 221, 301, 305, 346, 366
MalI GATC 3 cut(s) 127, 162, 203
MboI GATC 3 cut(s) 125, 160, 201
MboII GAAGA 3 cut(s) 62, 76, 196
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 5 cut(s) 117, 136, 172, 268, 324
MluNI TGGCCA 1 cut(s) 197
MnlI CCTC 1 cut(s) 322
Mox20I TGGCCA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 29
MscI TGGCCA 1 cut(s) 197
MseI TTAA 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeII GATC 3 cut(s) 125, 160, 201
NlaIII CATG 1 cut(s) 405
NlaIV GGNNCC 1 cut(s) 246
NspI RCATGY 1 cut(s) 405
PceI AGGCCT 1 cut(s) 332
PciI ACATGT 1 cut(s) 401
PctI GAATGC 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 81, 154
PfoI TCCNGGA 1 cut(s) 121
PscI ACATGT 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 244
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 3 cut(s) 125, 160, 201
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 219
SetI ASST 4 cut(s) 38, 108, 150, 369
SinI GGWCC 1 cut(s) 244
SmlI CTYRAG 3 cut(s) 19, 149, 178
SmoI CTYRAG 3 cut(s) 19, 149, 178
Sse9I AATT 5 cut(s) 117, 136, 172, 268, 324
SseBI AGGCCT 1 cut(s) 332
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 248
TasI AATT 5 cut(s) 117, 136, 172, 268, 324
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 2 cut(s) 81, 154
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 321
Vha464I CTTAAG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 244
XceI RCATGY 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.