Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000791.1

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

32922 .. 33622

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000791.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgattatgccgtcgaagttcatggcggagcggaggggggttcagcgccagtggcggcccgtgcagcgtcgcctagcgtcggtggctaatgaggattcaaaggtaagatggctgatgtttgctgtgttactattacccaattcctcttcttctgagagcaccaaagtctctgtggatttgtactacgaaaccctttgtcctgattgctctgatttcattgttaaacatctgatcaagctcttcgacaccggactcatcttcgtcgttgacctgaatctcgtcccctatggcaacaccaagcaagaaaccaacgacaccatcacttgccagcgcggtgaggcggtgatcggaagtcgaagaaaacctaagagcagaggcgtcgaagatttgaggctagcttgtggaggctgggatctatgccatgcatcgatcctgcctgggcttgagtcaccgttgaccattctttcatttggtggtggtggtgttttgggtggcggccggacgccgcatctttcggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

173

Amino Acids

19.12

Weight (kDa)

8.65

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	31
AccII	CGCG	1 cut(s)	333
AciI	CCGC	7 cut(s)	26, 31, 55, 333, 341, 495, 506
AclWI	GGATC	2 cut(s)	420, 424
AcoI	YGGCCR	1 cut(s)	496
AcyI	GRCGYC	2 cut(s)	378, 503
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	99
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	238, 398
AluI	AGCT	2 cut(s)	238, 398
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	420, 424
AoxI	GGCC	2 cut(s)	56, 496
ApeKI	GCWGC	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	48, 333
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	347, 355, 441
AsuNHI	GCTAGC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	102, 326
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	74, 395
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	4 cut(s)	56, 65, 496, 506
BlsI	GCNGC	4 cut(s)	57, 66, 497, 507
Bme1390I	CCNGG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	434, 517
BmtI	GCTAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	428
BsaHI	GRCGYC	2 cut(s)	378, 503
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	49
BseX3I	CGGCCG	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	58, 498
BshVI	ATCGAT	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	249, 499
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	58, 498
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	231, 345, 412, 429
BspACI	CCGC	7 cut(s)	26, 31, 55, 333, 341, 495, 506
BspANI	GGCC	2 cut(s)	58, 498
BspCNI	CTCAG	1 cut(s)	145
BspDI	ATCGAT	1 cut(s)	428
BspFNI	CGCG	1 cut(s)	333
BspOI	GCTAGC	1 cut(s)	398
BspPI	GGATC	2 cut(s)	420, 424
BspQI	GCTCTTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	4 cut(s)	231, 345, 412, 429
BssNI	GRCGYC	2 cut(s)	378, 503
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	151, 245
BstACI	GRCGYC	2 cut(s)	378, 503
BstC8I	GCNNGC	2 cut(s)	329, 396
BstDEI	CTNAG	2 cut(s)	153, 366
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	2 cut(s)	48, 333
BstKTI	GATC	4 cut(s)	234, 348, 415, 432
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	4 cut(s)	231, 345, 412, 429
BstMCI	CGRYCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 61, 64, 83
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BstZI	CGGCCG	1 cut(s)	496
Bsu15I	ATCGAT	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	58, 498
BsuTUI	ATCGAT	1 cut(s)	428
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	329, 396
CfoI	GCGC	2 cut(s)	48, 333
Cfr13I	GGNCC	1 cut(s)	57
ClaI	ATCGAT	1 cut(s)	428
CseI	GACGC	4 cut(s)	56, 66, 367, 511
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	22, 422
CviJI	RGCY	9 cut(s)	58, 86, 112, 238, 394, 398, 408, 442, 498
CviKI_1	RGCY	9 cut(s)	58, 86, 112, 238, 394, 398, 408, 442, 498
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	153, 366
DpnI	GATC	4 cut(s)	233, 347, 414, 431
DpnII	GATC	4 cut(s)	231, 345, 412, 429
EaeI	YGGCCR	1 cut(s)	496
EagI	CGGCCG	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	151, 245
EarI	CTCTTC	2 cut(s)	151, 245
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	436
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	2 cut(s)	25, 425
FaiI	YATR	5 cut(s)	8, 23, 288, 418, 423
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	21, 421
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	56, 65, 496, 506
Fsp4HI	GCNGC	4 cut(s)	56, 65, 496, 506
FspBI	CTAG	2 cut(s)	74, 395
GlaI	GCGC	2 cut(s)	47, 332
GluI	GCNGC	4 cut(s)	56, 65, 496, 506
GsaI	CCCAGC	1 cut(s)	412
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	2 cut(s)	58, 498
HapII	CCGG	2 cut(s)	249, 499
HgaI	GACGC	4 cut(s)	56, 66, 367, 511
HhaI	GCGC	2 cut(s)	48, 333
Hin1I	GRCGYC	2 cut(s)	378, 503
Hin1II	CATG	2 cut(s)	25, 425
Hin6I	GCGC	2 cut(s)	46, 331
HinP1I	GCGC	2 cut(s)	46, 331
HincII	GTYRAC	2 cut(s)	268, 456
HindII	GTYRAC	2 cut(s)	268, 456
HinfI	GANTC	4 cut(s)	95, 252, 274, 446
HpaII	CCGG	2 cut(s)	249, 499
HphI	GGTGA	3 cut(s)	347, 355, 441
Hpy166II	GTNNAC	2 cut(s)	268, 456
Hpy188I	TCNGA	5 cut(s)	154, 211, 231, 350, 517
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	268, 456
Hpy99I	CGWCG	5 cut(s)	16, 72, 82, 266, 383
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	64, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 61, 64, 83
HpyF3I	CTNAG	2 cut(s)	153, 366
Hsp92I	GRCGYC	2 cut(s)	378, 503
Hsp92II	CATG	2 cut(s)	25, 425
HspAI	GCGC	2 cut(s)	46, 331
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	231, 345, 412, 429
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	434, 517
MaeI	CTAG	2 cut(s)	74, 395
MaeIII	GTNAC	2 cut(s)	126, 447
MalI	GATC	4 cut(s)	233, 347, 414, 431
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	4 cut(s)	231, 345, 412, 429
MboII	GAAGA	6 cut(s)	138, 141, 232, 250, 369, 395
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	246, 455
MnlI	CCTC	7 cut(s)	27, 85, 154, 331, 368, 384, 398
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	1 cut(s)	222
MspI	CCGG	2 cut(s)	249, 499
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	4 cut(s)	52, 61, 64, 83
NdeII	GATC	4 cut(s)	231, 345, 412, 429
NheI	GCTAGC	1 cut(s)	394
NlaIII	CATG	2 cut(s)	25, 425
NmuCI	GTSAC	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	95, 274
PkrI	GCNGC	4 cut(s)	57, 66, 497, 507
PleI	GAGTC	2 cut(s)	246, 454
PpsI	GAGTC	2 cut(s)	246, 454
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	4 cut(s)	56, 65, 496, 506
Sau3AI	GATC	4 cut(s)	231, 345, 412, 429
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	246, 455
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	5 cut(s)	105, 240, 273, 367, 400
SfaNI	GCATC	2 cut(s)	434, 517
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	7 cut(s)	26, 31, 55, 333, 341, 495, 506
SspMI	CTAG	2 cut(s)	74, 395
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	5 cut(s)	14, 243, 355, 381, 428
TasI	AATT	1 cut(s)	139
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	3 cut(s)	58, 498, 508
TfiI	GAWTC	2 cut(s)	95, 274
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	447
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	3 cut(s)	10, 205, 456
TspRI	CASTG	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	2 cut(s)	74, 395
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.