Rh5AG465800
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001585
Physical Location & Seq
Reverse (-)
79956961 .. 79957281
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG465800.1

Sequence Viewer

Length: 321 bp
ATGCCGTTGAAGTTCATGGCAGAGCGGAGGGGGGTTCAGCGCCAGTGGCGGCCCGTGCGGCGTCACCTAGCGTCAGTGGCTAATGAGGATTCAAAGGTAGGATGGCTGATGTTTGCTGTGTTACTATTACCCAATTCCTCTTCTTCTGAGAGCACCAAAGTCTTTGTGGATTTGTACTACGAAACCCTTTGTCCTGATTGCTCTGATTTCATTGTCAAACATCTGATCAAGCTCTTCGACACCGGACTCATCTCCGCCGTTGACCTGAATCTCGTCCCCTACGGCAACGCCAAGCTCGGAACCAACGACACCATCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

106

Amino Acids

11.96

Weight (kDa)

7.79

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 56 - 103 1.1e-11 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 25
AciI CCGC 4 cut(s) 25, 49, 58, 255
AcyI GRCGYC 1 cut(s) 61
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 2 cut(s) 10, 93
AluBI AGCT 2 cut(s) 232, 295
AluI AGCT 2 cut(s) 232, 295
Alw21I GWGCWC 1 cut(s) 155
AoxI GGCC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 155
BccI CCATC 2 cut(s) 96, 320
BceAI ACGGC 2 cut(s) 242, 298
BclI TGATCA 1 cut(s) 225
BfaI CTAG 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 43
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 2 cut(s) 50, 59
BlsI GCNGC 2 cut(s) 51, 60
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 301
BsaHI GRCGYC 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 43
BshFI GGCC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 4 cut(s) 25, 49, 58, 255
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 301
BspQI GCTCTTC 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 43
BssMI GATC 1 cut(s) 225
BssNI GRCGYC 1 cut(s) 61
Bst6I CTCTTC 2 cut(s) 145, 239
BstACI GRCGYC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 4 cut(s) 46, 55, 58, 77
BsuRI GGCC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 50, 81
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 51
CseI GACGC 2 cut(s) 50, 60
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 16
CviJI RGCY 5 cut(s) 52, 80, 106, 232, 295
CviKI_1 RGCY 5 cut(s) 52, 80, 106, 232, 295
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 145, 239
EarI CTCTTC 2 cut(s) 145, 239
EciI GGCGGA 1 cut(s) 244
FaeI CATG 1 cut(s) 19
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 50, 59
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 50, 59
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 50, 59
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 1 cut(s) 52
HapII CCGG 1 cut(s) 243
HgaI GACGC 2 cut(s) 50, 60
HhaI GCGC 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 61
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 3 cut(s) 89, 246, 268
HpaII CCGG 1 cut(s) 243
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 4 cut(s) 148, 205, 225, 299
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 55, 58, 77
HpyF3I CTNAG 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 61
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 1 cut(s) 225
LguI GCTCTTC 1 cut(s) 239
LpnPI CCDG 4 cut(s) 56, 207, 256, 278
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 62, 120
MalI GATC 1 cut(s) 227
MbiI CCGCTC 1 cut(s) 25
MboI GATC 1 cut(s) 225
MboII GAAGA 3 cut(s) 132, 135, 226
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 3 cut(s) 21, 79, 148
MspI CCGG 1 cut(s) 243
MwoI GCNNNNNNNGC 4 cut(s) 46, 55, 58, 77
NdeII GATC 1 cut(s) 225
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 62
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PfeI GAWTC 2 cut(s) 89, 268
PkrI GCNGC 2 cut(s) 51, 60
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 51
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 239
SatI GCNGC 2 cut(s) 50, 59
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 240
SduI GDGCHC 1 cut(s) 155
SetI ASST 5 cut(s) 69, 99, 234, 267, 297
Sse9I AATT 1 cut(s) 133
SsiI CCGC 4 cut(s) 25, 49, 58, 255
SspMI CTAG 1 cut(s) 68
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 133
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 52, 61
TfiI GAWTC 2 cut(s) 89, 268
TscAI CASTG 2 cut(s) 50, 81
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 4, 199
TspRI CASTG 2 cut(s) 50, 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.