Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

26374883 .. 26376588

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G283300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGTTTTAGAAAATTGTTGACATTCTTCTTCTTCCTGTTGTTGTTGTTGATAATCCCATCTTACTGTAATGCTTCTGAGAAAGTTTCAGTAGCTCTCTACTATGAAACTCTGTGTCCATATTGTGCAGATTTCATAGTCAACCATCTGGTCAAGCTCTTCCAGAATGGTCTCATCTCCATCATCAACCTCAGGCTGGTCCCCTGGGGCAACGCTTGGCTCAACTCCGACGGCTCCTTCAGCTGCCAGCATGGATCAGATGAATGTTTGCTCAACACAATTGACGCCTGCACCATTTCCATCTATCCTGATGTGAACCGGCATTTTGCATTCATCCACTGCGTTGAGCGCCTTAGCTTGCAGGGCAGACACAGTGCATGGGCCAATTGTTTTGAAATGTCTAGATTAGGCACTACCCCTATCGATTGCTACAACAGTGGAAATGGCAATGTGATTGAAGGAAAATATGGTAGGGAAACTGCTCAGCTTAAACCCCCACTTAGATTTGTGCCATGGGTTCTTGTGAACAATCAACCACTTCAAGAGGATTATGAAAATTTTATGGCCTATATATGCAAGGCTTACAAAGGCCAACCTCCGGAAGCTTGCAGATCAGTCCGTTTTACAATTGAATCAACGGGGAAAGAAAAACCGGTTCCTCAAGTTTGTCGTGCAAGCGAAGGAAGAAACTCTTCTCATTATCAGAAGCACCAGCACAGAAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

243

Amino Acids

27.63

Weight (kDa)

8.42

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	598
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	196, 598
AgeI	ACCGGT	1 cut(s)	652
AgsI	TTSAA	4 cut(s)	395, 458, 542, 632
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	6 cut(s)	95, 157, 243, 357, 487, 605
AluI	AGCT	6 cut(s)	95, 157, 243, 357, 487, 605
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	598
AoxI	GGCC	3 cut(s)	381, 564, 589
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	556
AsiGI	ACCGGT	1 cut(s)	652
Asp700I	GAANNNNTTC	1 cut(s)	691
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	199, 381
AvaII	GGWCC	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	4 cut(s)	67, 153, 188, 308
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	352
BisI	GCNGC	1 cut(s)	244
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	199, 381
BmiI	GGNNCC	3 cut(s)	201, 235, 657
BmrFI	CCNGG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	645
Bsa29I	ATCGAT	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	203, 204, 512
BsaWI	WCCGGW	2 cut(s)	598, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 598
Bse118I	RCCGGY	2 cut(s)	318, 652
Bse21I	CCTNAGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	454
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	205
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	3 cut(s)	203, 204, 512
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	196, 598
BseMI	GCAATG	1 cut(s)	454
BseMII	CTCAG	3 cut(s)	69, 205, 497
BseXI	GCAGC	1 cut(s)	230
BsgI	GTGCAG	2 cut(s)	147, 274
BshFI	GGCC	3 cut(s)	383, 566, 591
BshTI	ACCGGT	1 cut(s)	652
BshVI	ATCGAT	1 cut(s)	423
BsiSI	CCGG	3 cut(s)	319, 599, 653
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	196, 598
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	383, 566, 591
Bso31I	GGTCTC	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	598
Bsp143I	GATC	2 cut(s)	254, 611
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	512
BspANI	GGCC	3 cut(s)	383, 566, 591
BspCNI	CTCAG	3 cut(s)	70, 204, 496
BspDI	ATCGAT	1 cut(s)	423
BspEI	TCCGGA	1 cut(s)	598
BspLI	GGNNCC	3 cut(s)	201, 235, 657
BspPI	GGATC	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	454
BsrFI	RCCGGY	2 cut(s)	318, 652
BssAI	RCCGGY	2 cut(s)	318, 652
BssECI	CCNNGG	3 cut(s)	203, 204, 512
BssMI	GATC	2 cut(s)	254, 611
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	3 cut(s)	68, 374, 437
Bst6I	CTCTTC	2 cut(s)	164, 697
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	5 cut(s)	248, 289, 359, 607, 676
BstDEI	CTNAG	5 cut(s)	78, 191, 353, 483, 500
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	2 cut(s)	257, 614
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	254, 611
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 348, 363
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	230
Bsu15I	ATCGAT	1 cut(s)	423
Bsu36I	CCTNAGG	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	383, 566, 591
BsuTUI	ATCGAT	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	333
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	3 cut(s)	337, 379, 442
Cac8I	GCNNGC	5 cut(s)	248, 289, 359, 607, 676
CfoI	GCGC	1 cut(s)	351
Cfr10I	RCCGGY	2 cut(s)	318, 652
Cfr13I	GGNCC	2 cut(s)	199, 381
ClaI	ATCGAT	1 cut(s)	423
CseI	GACGC	1 cut(s)	293
CspAI	ACCGGT	1 cut(s)	652
CviAII	CATG	3 cut(s)	251, 378, 513
DdeI	CTNAG	5 cut(s)	78, 191, 353, 483, 500
DpnI	GATC	2 cut(s)	256, 613
DpnII	GATC	2 cut(s)	254, 611
Eam1104I	CTCTTC	2 cut(s)	164, 697
EarI	CTCTTC	2 cut(s)	164, 697
Eco130I	CCWWGG	1 cut(s)	512
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	223
Eco81I	CCTNAGG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	3 cut(s)	254, 381, 516
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	3 cut(s)	250, 377, 512
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	383, 566, 591
HapII	CCGG	3 cut(s)	319, 599, 653
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	254, 381, 516
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	2 cut(s)	21, 142
HindII	GTYRAC	2 cut(s)	21, 142
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	1 cut(s)	632
HpaII	CCGG	3 cut(s)	319, 599, 653
Hpy166II	GTNNAC	4 cut(s)	21, 142, 316, 526
Hpy188I	TCNGA	4 cut(s)	79, 229, 259, 705
Hpy188III	TCNNGA	5 cut(s)	163, 308, 402, 542, 599
Hpy8I	GTNNAC	4 cut(s)	21, 142, 316, 526
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	247, 452, 674
HpyCH4III	ACNGT	3 cut(s)	68, 374, 437
HpyCH4V	TGCA	8 cut(s)	128, 291, 329, 361, 377, 576, 609, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 348, 363
HpyF3I	CTNAG	5 cut(s)	78, 191, 353, 483, 500
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	254, 381, 516
HspAI	GCGC	1 cut(s)	349
Kpn2I	TCCGGA	1 cut(s)	598
Kzo9I	GATC	2 cut(s)	254, 611
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	402
MalI	GATC	2 cut(s)	256, 613
MboI	GATC	2 cut(s)	254, 611
MboII	GAAGA	6 cut(s)	19, 22, 25, 151, 684, 696
MfeI	CAATTG	3 cut(s)	279, 385, 627
MluCI	AATT	5 cut(s)	14, 279, 385, 556, 627
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	4 cut(s)	200, 538, 606, 669
MroI	TCCGGA	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	691
MseI	TTAA	2 cut(s)	489, 727
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	3 cut(s)	319, 599, 653
MspR9I	CCNGG	1 cut(s)	205
MunI	CAATTG	3 cut(s)	279, 385, 627
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	3 cut(s)	240, 348, 363
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	2 cut(s)	254, 611
NlaIII	CATG	3 cut(s)	254, 381, 516
NlaIV	GGNNCC	3 cut(s)	201, 235, 657
PasI	CCCWGGG	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	691
PfeI	GAWTC	1 cut(s)	632
PinAI	ACCGGT	1 cut(s)	652
PkrI	GCNGC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	3 cut(s)	201, 235, 657
PspPI	GGNCC	2 cut(s)	199, 381
PvuII	CAGCTG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	489, 727
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	254, 611
Sau96I	GGNCC	2 cut(s)	199, 381
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	9 cut(s)	97, 159, 192, 245, 359, 489, 598, 607, 726
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
Sse9I	AATT	5 cut(s)	14, 279, 385, 556, 627
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	3 cut(s)	68, 374, 437
TaqI	TCGA	1 cut(s)	423
TasI	AATT	5 cut(s)	14, 279, 385, 556, 627
TfiI	GAWTC	1 cut(s)	632
Tru1I	TTAA	2 cut(s)	489, 727
Tru9I	TTAA	2 cut(s)	489, 727
TscAI	CASTG	3 cut(s)	344, 379, 442
TseI	GCWGC	1 cut(s)	243
TspDTI	ATGAA	5 cut(s)	120, 124, 276, 322, 567
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	3 cut(s)	344, 379, 442
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	556
XbaI	TCTAGA	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	691
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.