Rorug07G0171500
ERF Family

Gamma-interferon-inducible lysosomal thiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001585
Physical Location & Seq
Reverse (-)
13937048 .. 13937523
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0171500.1

Sequence Viewer

Length: 288 bp
ATGGACTTTAGTCCCACCTCTAACGGTTGCACTAGGGGTATCAAATGCACGGCGGATATAAACGGACAGTGCCCCGCTCAGTTGAGGGCTCCCGGAGGGTGTAACAACCCATGCACTGTGTTCAAAACTGATCAGTATTGTTGTAATTCTGGAAACTGTGGTCCTACAGACTACTCTAGGTTTTTTAAAAGTCGTTGCCAGGATGCTTATAGTTACCCTAAGGATGATGCAACGAGTACATTTACTTGCCATGGTGGCACAAACTATAGGGTTGTGTTCTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 map04612
Pfam Domains
Protein Families
GILT

Protein Analysis

95

Amino Acids

10.34

Weight (kDa)

8.0

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 4 - 95 2.1e-25 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AciI CCGC 2 cut(s) 53, 75
AfaI GTAC 1 cut(s) 238
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 161
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 93
BfaI CTAG 2 cut(s) 33, 177
BfmI CTRYAG 2 cut(s) 165, 265
BglI GCCNNNNNGGC 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 93, 200
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 93, 200
BmsI GCATC 2 cut(s) 193, 217
BoxI GACNNNNGTC 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 250
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 2 cut(s) 208, 229
BseMII CTCAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 74, 91
Bsp143I GATC 1 cut(s) 130
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 2 cut(s) 53, 75
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 90
BsrBI CCGCTC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 4 cut(s) 26, 69, 118, 158
BstDEI CTNAG 2 cut(s) 78, 219
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 208, 229
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 1 cut(s) 200
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 91, 198
BstSFI CTRYAG 2 cut(s) 165, 265
BstSLI GKGCMC 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 208, 229
BtsIMutI CAGTG 2 cut(s) 74, 114
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 237
CviAII CATG 3 cut(s) 111, 251, 285
CviJI RGCY 1 cut(s) 89
CviKI_1 RGCY 1 cut(s) 89
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 78, 219
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DraI TTTAAA 1 cut(s) 187
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 114, 254, 288
FaiI YATR 6 cut(s) 59, 112, 210, 252, 267, 286
FatI CATG 3 cut(s) 110, 250, 284
FauI CCCGC 1 cut(s) 82
FbaI TGATCA 1 cut(s) 130
FokI GGATG 2 cut(s) 215, 236
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 2 cut(s) 33, 177
HapII CCGG 1 cut(s) 93
Hin1II CATG 3 cut(s) 114, 254, 288
HpaII CCGG 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 150
HpyCH4III ACNGT 4 cut(s) 26, 69, 118, 158
HpyCH4V TGCA 4 cut(s) 30, 48, 114, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 78, 219
Hsp92II CATG 3 cut(s) 114, 254, 288
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 106, 135, 185, 212
LweI GCATC 2 cut(s) 193, 217
MaeI CTAG 2 cut(s) 33, 177
MaeIII GTNAC 2 cut(s) 101, 212
MalI GATC 1 cut(s) 132
MbiI CCGCTC 1 cut(s) 77
MboI GATC 1 cut(s) 130
MhlI GDGCHC 2 cut(s) 74, 91
MluCI AATT 1 cut(s) 145
MnlI CCTC 3 cut(s) 28, 78, 89
MseI TTAA 1 cut(s) 186
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 93, 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 93
NcoI CCATGG 1 cut(s) 250
NdeII GATC 1 cut(s) 130
NlaIII CATG 3 cut(s) 114, 254, 288
NlaIV GGNNCC 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 91
PshAI GACNNNNGTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 161
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 93, 200
SduI GDGCHC 2 cut(s) 74, 91
SetI ASST 2 cut(s) 20, 182
SfaNI GCATC 2 cut(s) 193, 217
SfcI CTRYAG 2 cut(s) 165, 265
SinI GGWCC 1 cut(s) 161
Sse9I AATT 1 cut(s) 145
SsiI CCGC 2 cut(s) 53, 75
SspMI CTAG 2 cut(s) 33, 177
StyD4I CCNGG 2 cut(s) 91, 198
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 4 cut(s) 26, 69, 118, 158
TasI AATT 1 cut(s) 145
TatI WGTACW 1 cut(s) 236
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 74, 121
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 2 cut(s) 74, 121
VpaK11BI GGWCC 1 cut(s) 161
XspI CTAG 2 cut(s) 33, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.