Rorug07G0171400
ERF Family

Gamma-interferon-inducible lysosomal thiol

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
13927580 .. 13933684
6105 bp
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UTR
Exon/CDS
Intron
Rorug07G0171400.1

Sequence Viewer

Length: 519 bp
ATGAGTTCACTGTTCATTAACTTACTGTTCATGAACATCGGCTATTGCTGTGTAAATGATTTTAGCTTCTTCTCCAGTTCTCCACTCACCAATCCGCAAAAGAACAACAACCCAAAAGCAAAAACAAACAGAGAGAAATACAGAAAGAGAAACCTGAAGCCCTCCTTTTTGGACATCACGATTTTCTTCATTATCAAAGGTATTGGCTTGATTTCTTCAAAATCAGTGTATAGCACTCTTGAAGATATTTTGAAGGCTATTGATCTTGAAGAAGACCTTGATTCTGAGCCTATTTGCCTTTTAATTTCTGAGCTAGAAATAAGTATTGTCGGTCTCAATTCTGACGGAGGAAGAAGCAGCTCTAAGCGACTCAGGGTACGTAGGAGTAGAAGACAGACTGTGACTGCTGTGGTGCAGACCAGATTTGAGGTGGATCGAACAAGCTGCTCACTATCTGATATTCAAGTGTCAAGGAAAGTAAGCATGTCTAAAATTTCACAGGATACCATCTTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

172

Amino Acids

19.53

Weight (kDa)

9.54

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 378
AgsI TTSAA 5 cut(s) 219, 242, 253, 269, 464
AluBI AGCT 4 cut(s) 66, 313, 360, 444
AluI AGCT 4 cut(s) 66, 313, 360, 444
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 357, 444
ApoI RAATTY 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 79
BbsI GAAGAC 2 cut(s) 279, 397
BbvI GCAGC 2 cut(s) 369, 431
BccI CCATC 1 cut(s) 515
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 1 cut(s) 314
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 2 cut(s) 358, 445
BlsI GCNGC 2 cut(s) 359, 446
BpiI GAAGAC 2 cut(s) 279, 397
BpmI CTGGAG 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 276, 300, 385
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 369, 431
BsgI GTGCAG 1 cut(s) 434
BsmAI GTCTC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 2 cut(s) 262, 433
BspACI CCGC 1 cut(s) 95
BspCNI CTCAG 3 cut(s) 277, 301, 384
BspHI TCATGA 1 cut(s) 30
BspPI GGATC 1 cut(s) 441
BspTNI GGTCTC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 75
BssMI GATC 2 cut(s) 262, 433
Bst4CI ACNGT 3 cut(s) 12, 27, 400
BstBAI YACGTR 1 cut(s) 380
BstDEI CTNAG 4 cut(s) 285, 309, 363, 371
BstKTI GATC 2 cut(s) 265, 436
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 2 cut(s) 262, 433
BstNSI RCATGY 1 cut(s) 487
BstSNI TACGTA 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 369, 431
BstV2I GAAGAC 2 cut(s) 279, 397
BsuI GTATCC 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 8, 231
CciI TCATGA 1 cut(s) 30
Csp6I GTAC 1 cut(s) 377
CviAII CATG 2 cut(s) 31, 484
CviJI RGCY 9 cut(s) 42, 66, 160, 207, 257, 289, 313, 360, 444
CviKI_1 RGCY 9 cut(s) 42, 66, 160, 207, 257, 289, 313, 360, 444
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 4 cut(s) 285, 309, 363, 371
DpnI GATC 2 cut(s) 264, 435
DpnII GATC 2 cut(s) 262, 433
Eco105I TACGTA 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 176
FaeI CATG 2 cut(s) 34, 487
FaiI YATR 3 cut(s) 32, 231, 485
FalI AAGNNNNNCTT 4 cut(s) 149, 181, 261, 293
FatI CATG 2 cut(s) 30, 483
Fnu4HI GCNGC 2 cut(s) 358, 445
Fsp4HI GCNGC 2 cut(s) 358, 445
FspBI CTAG 1 cut(s) 314
GluI GCNGC 2 cut(s) 358, 445
GsuI CTGGAG 1 cut(s) 58
Hin1II CATG 2 cut(s) 34, 487
HinfI GANTC 2 cut(s) 281, 369
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 4 cut(s) 286, 310, 343, 457
Hpy188III TCNNGA 4 cut(s) 31, 178, 239, 266
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 3 cut(s) 12, 27, 400
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 1 cut(s) 415
HpyF3I CTNAG 4 cut(s) 285, 309, 363, 371
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 2 cut(s) 34, 487
Kzo9I GATC 2 cut(s) 262, 433
LpnPI CCDG 5 cut(s) 88, 167, 358, 433, 485
Lsp1109I GCAGC 2 cut(s) 369, 431
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 400
MalI GATC 2 cut(s) 264, 435
MboI GATC 2 cut(s) 262, 433
MboII GAAGA 9 cut(s) 61, 178, 207, 254, 281, 284, 363, 402, 502
MluCI AATT 3 cut(s) 303, 337, 492
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 3 cut(s) 172, 341, 421
MseI TTAA 2 cut(s) 18, 302
NdeII GATC 2 cut(s) 262, 433
NlaIII CATG 2 cut(s) 34, 487
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 1 cut(s) 487
PagI TCATGA 1 cut(s) 30
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 2 cut(s) 359, 446
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 380
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SaqAI TTAA 2 cut(s) 18, 302
SatI GCNGC 2 cut(s) 358, 445
Sau3AI GATC 2 cut(s) 262, 433
SchI GAGTC 1 cut(s) 363
SetI ASST 9 cut(s) 68, 156, 202, 279, 315, 362, 382, 432, 446
SnaBI TACGTA 1 cut(s) 380
Sse9I AATT 3 cut(s) 303, 337, 492
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 314
TaaI ACNGT 3 cut(s) 12, 27, 400
TaiI ACGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 436
TaqII GACCGA 1 cut(s) 320
TasI AATT 3 cut(s) 303, 337, 492
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 18, 302
Tru9I TTAA 2 cut(s) 18, 302
TscAI CASTG 2 cut(s) 15, 231
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 2 cut(s) 357, 444
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 4 cut(s) 4, 19, 47, 178
TspGWI ACGGA 2 cut(s) 360, 503
TspRI CASTG 2 cut(s) 15, 231
XapI RAATTY 1 cut(s) 492
XceI RCATGY 1 cut(s) 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.