Rh3CG117700

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001585
Physical Location & Seq
Forward (+)
9487839 .. 9499698
11860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG117700.1

Sequence Viewer

Length: 1746 bp
ATGAGTCAACATGGATTCCTTCAACAGAGTTCTGCTTGTATAGCACGGTTTTCAGAGGGGAGTGAGTGGTGCCAAGCCATATCATCTTCCCTTCCCAACCTCAGGGTGTTGAGCTTCTCCTATTGTAATCTTTCAGGCCCTTTTCACGAGTCTCTTGCTGACCTCCGATCTCTCTCCGTGATTCAATTGGGATGGAACAATATCTCTGCTCCAGTTCCAGCATTCTTTGCCAACTTTTCAAACTTGACATCCTTGATTCTCTATGATTGTAATTTGCAAGGAACATTTCCGAAAGAGATCTTTCAATTACCTTCTCTTCTTGTGATAAGCCTTTCAGGAAATGACGAACTTGATGGTTCCTTGCCAGAATTTCCAAAGAATGGATCTCTTCAATACCTGGATCTAAACGGGACTAATTTTTCAGGAGCATTACCAAACTCTATTGGCAACCTCAAAATGTTGTCCACAATTGATATTACAGCCTGTAATTTCACAGGATCAATCCCCAAGTCAATGACAAACCTTACGCAATTGGTTTCTTTGCGGATGTATGAAAACCACTTTGAAGGTTCAATTCCGTCACTCAGTGGGGCCAAGAATCTAGAAGTAATAGACCTCGCTTTTAATGTTCTGACAGGTAATATTAACTGCATCCACCGAGCAAACCTTACTAATCTATCCTTTCTCATCTTAGCTGGCAATATGCTCGATGGGAATATTCCATCAGCTCTGTTTTCTCTTCCCTTGCTGCATGTGATAGATCTTTCCCACAACCAATTCTTTGGTCATTTTCCTGAAATTTCTAATCTCTCATCCTACTCTGTCAAAGGCCTTGATTTGAGTCGAAACAATCTGGAAGGGCCAATACCCATGTCTATCTTTAATTTACGGAGCCTTACTAATCTTTATCTTTCTTCAAATAATTTCAGCGGCTCATTTCCTCTAGATGGTCTTCAACATCTGAGAAATCTTTCTTCTCTTGATCTTTCACACAACAGCTTGCTTCTTAGCCATGATGCTACCAATTTATCATATTCCTACTTTCCTCAGTTTGAAGATTTGTCGTTGGCCTCATTAAACTTGAGAACATTCCCTGATTTCTTGAGAAATCAATCTGAATTACGTTCTTTAGATCTTTCAGATAACCAGATACATGGCGAGATACCCAACTGGATTTGGAGGTTCAATAATCTCTATTTCCTAAATCTTTCGAGCAACTTTCTAGAAACTCTAGAAGGTCATACAATCAATCTCACTTCTATACAATTCCTTGACCTTCATTCCAACAAGCTTCATGGGGAAATCCCAATTTCATCGTCACCTAACATGTATTATCTGGATTACTCAAGGAACAACTTCAGCTCTACCATACCAACTACCATTGGAGATATGCTTCTTCAAACCAGATTCTTCTATGTCGCAAGCAACAACCTTCAGGGGATAATTCCTGGATCAATATGCAATTCACTTTACCTTGAGATTCTTGATCTATCCAATAATTCCTTAAGTGTGAACCATTTGGCCAAGATCTTCCAGAATGTGCTCATCTCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCTGATTTCTGCTTCGCCTGCCAGAATGGAACAGATGAATGCTTGCTCAACACAATTGAGGCCTGCACCATCACCATCTATCCTGATGTGGTAAAGCTTATCATACAGACTTCAAACACTTTGTTCCAAACATGTACAGATGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

581

Amino Acids

64.56

Weight (kDa)

4.92

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 108 - 185 1.3e-09 Leucine-rich repeat region
LRR_14 PF23598 191 - 430 7.4e-09 Leucine-rich repeat region
LRR_8 PF13855 276 - 334 9.1e-06 Leucine rich repeat
LRR_8 PF13855 373 - 431 1e-05 Leucine rich repeat
GILT PF03227 500 - 562 2.8e-12 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 380
AciI CCGC 2 cut(s) 544, 930
AclWI GGATC 4 cut(s) 391, 408, 505, 1459
AcoI YGGCCR 1 cut(s) 1521
AcsI RAATTY 2 cut(s) 368, 798
AcuI CTGAAG 2 cut(s) 1342, 1418
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 1 cut(s) 1732
AfiI CCNNNNNNNGG 3 cut(s) 102, 380, 947
AflII CTTAAG 1 cut(s) 1504
AflIII ACRYGT 2 cut(s) 1326, 1727
AjnI CCWGG 2 cut(s) 396, 1447
AjuI GAANNNNNNNTTGG 2 cut(s) 1558, 1590
AluBI AGCT 7 cut(s) 114, 695, 728, 999, 1291, 1362, 1693
AluI AGCT 7 cut(s) 114, 695, 728, 999, 1291, 1362, 1693
Alw21I GWGCWC 1 cut(s) 1545
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 4 cut(s) 391, 408, 505, 1459
AoxI GGCC 7 cut(s) 136, 591, 829, 860, 1068, 1521, 1656
ApeKI GCWGC 1 cut(s) 748
ApoI RAATTY 2 cut(s) 368, 798
Asp700I GAANNNNTTC 2 cut(s) 970, 1355
AspS9I GGNCC 4 cut(s) 137, 591, 860, 1570
AsuHPI GGTGA 2 cut(s) 1311, 1660
AvaII GGWCC 1 cut(s) 1570
AxyI CCTNAGG 1 cut(s) 101
BalI TGGCCA 1 cut(s) 1523
BanI GGYRCC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 944
Bbv12I GWGCWC 1 cut(s) 1545
BbvI GCAGC 1 cut(s) 735
BccI CCATC 8 cut(s) 186, 347, 704, 730, 941, 1559, 1673, 1679
BcgI CGANNNNNNTGC 4 cut(s) 137, 171, 688, 722
BciT130I CCWGG 2 cut(s) 398, 1449
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 4 cut(s) 602, 944, 1223, 1232
BfrI CTTAAG 1 cut(s) 1504
BglII AGATCT 4 cut(s) 297, 760, 1132, 1527
BisI GCNGC 2 cut(s) 749, 931
BlsI GCNGC 2 cut(s) 750, 932
Bme1390I CCNGG 2 cut(s) 398, 1449
Bme18I GGWCC 1 cut(s) 1570
BmgT120I GGNCC 4 cut(s) 137, 591, 860, 1570
BmiI GGNNCC 5 cut(s) 71, 358, 592, 893, 1572
BmrFI CCNGG 2 cut(s) 398, 1449
BmsI GCATC 2 cut(s) 660, 1006
BpiI GAAGAC 1 cut(s) 944
BpmI CTGGAG 1 cut(s) 195
BpuEI CTTGAG 4 cut(s) 1102, 1123, 1330, 1496
BsaJI CCNNGG 1 cut(s) 1574
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 380, 947
Bse1I ACTGG 2 cut(s) 212, 1175
Bse21I CCTNAGG 1 cut(s) 101
BseBI CCWGG 2 cut(s) 398, 1449
BseDI CCNNGG 1 cut(s) 1574
BseGI GGATG 5 cut(s) 197, 248, 552, 651, 812
BseLI CCNNNNNNNGG 3 cut(s) 102, 380, 947
BseMII CTCAG 5 cut(s) 115, 598, 953, 1061, 1576
BseNI ACTGG 2 cut(s) 212, 1175
BseXI GCAGC 1 cut(s) 735
BsgI GTGCAG 1 cut(s) 1645
BshFI GGCC 7 cut(s) 138, 593, 831, 862, 1070, 1523, 1658
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 1545
BslFI GGGAC 2 cut(s) 424, 1556
BslI CCNNNNNNNGG 3 cut(s) 102, 380, 947
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 424, 1556
BsmI GAATGC 2 cut(s) 221, 1640
BsnI GGCC 7 cut(s) 138, 593, 831, 862, 1070, 1523, 1658
Bsp1286I GDGCHC 1 cut(s) 1545
Bsp1407I TGTACA 1 cut(s) 1730
BspACI CCGC 2 cut(s) 544, 930
BspANI GGCC 7 cut(s) 138, 593, 831, 862, 1070, 1523, 1658
BspCNI CTCAG 5 cut(s) 114, 597, 954, 1060, 1575
BspLI GGNNCC 5 cut(s) 71, 358, 592, 893, 1572
BspPI GGATC 4 cut(s) 391, 408, 505, 1459
BspT107I GGYRCC 1 cut(s) 69
BspTI CTTAAG 1 cut(s) 1504
BsrGI TGTACA 1 cut(s) 1730
BsrI ACTGG 2 cut(s) 212, 1175
BssECI CCNNGG 1 cut(s) 1574
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 1574
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 2 cut(s) 398, 1449
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 3 cut(s) 321, 393, 744
BstAFI CTTAAG 1 cut(s) 1504
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 1730
BstC8I GCNNGC 6 cut(s) 697, 1001, 1423, 1615, 1640, 1660
BstDEI CTNAG 7 cut(s) 101, 584, 691, 962, 1007, 1047, 1562
BstF5I GGATG 5 cut(s) 197, 248, 552, 651, 812
BstMAI GTCTC 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 41, 227, 1614
BstNI CCWGG 2 cut(s) 398, 1449
BstNSI RCATGY 3 cut(s) 755, 1330, 1731
BstSCI CCNGG 2 cut(s) 396, 1447
BstV1I GCAGC 1 cut(s) 735
BstV2I GAAGAC 1 cut(s) 944
BstX2I RGATCY 6 cut(s) 297, 383, 400, 760, 1132, 1527
BstXI CCANNNNNNTGG 2 cut(s) 782, 1154
BstYI RGATCY 6 cut(s) 297, 383, 400, 760, 1132, 1527
Bsu36I CCTNAGG 1 cut(s) 101
BsuRI GGCC 7 cut(s) 138, 593, 831, 862, 1070, 1523, 1658
BtsCI GGATG 5 cut(s) 197, 248, 552, 651, 812
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 6 cut(s) 697, 1001, 1423, 1615, 1640, 1660
Cfr13I GGNCC 4 cut(s) 137, 591, 860, 1570
Csp6I GTAC 1 cut(s) 1731
CviAII CATG 8 cut(s) 11, 752, 871, 1013, 1154, 1295, 1327, 1728
CviQI GTAC 1 cut(s) 1731
DdeI CTNAG 7 cut(s) 101, 584, 691, 962, 1007, 1047, 1562
DraIII CACNNNGTG 1 cut(s) 587
EaeI YGGCCR 1 cut(s) 1521
Eam1104I CTCTTC 3 cut(s) 321, 393, 744
EarI CTCTTC 3 cut(s) 321, 393, 744
Eco130I CCWWGG 1 cut(s) 1574
Eco147I AGGCCT 2 cut(s) 831, 1658
Eco47I GGWCC 1 cut(s) 1570
Eco57I CTGAAG 2 cut(s) 1342, 1418
Eco81I CCTNAGG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 396, 1447
EcoT14I CCWWGG 1 cut(s) 1574
ErhI CCWWGG 1 cut(s) 1574
FaeI CATG 8 cut(s) 14, 755, 874, 1016, 1157, 1298, 1330, 1731
FaqI GGGAC 2 cut(s) 424, 1556
FatI CATG 8 cut(s) 10, 751, 870, 1012, 1153, 1294, 1326, 1727
Fnu4HI GCNGC 2 cut(s) 749, 931
FokI GGATG 5 cut(s) 204, 235, 559, 638, 799
Fsp4HI GCNGC 2 cut(s) 749, 931
FspBI CTAG 4 cut(s) 602, 944, 1223, 1232
GluI GCNGC 2 cut(s) 749, 931
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 7 cut(s) 138, 593, 831, 862, 1070, 1523, 1658
Hin1II CATG 8 cut(s) 14, 755, 874, 1016, 1157, 1298, 1330, 1731
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HindIII AAGCTT 2 cut(s) 1289, 1691
HinfI GANTC 9 cut(s) 4, 15, 149, 181, 256, 598, 841, 1407, 1480
HphI GGTGA 2 cut(s) 1311, 1660
Hpy166II GTNNAC 3 cut(s) 8, 465, 1513
Hpy188I TCNGA 9 cut(s) 55, 167, 291, 633, 963, 1117, 1141, 1565, 1600
Hpy8I GTNNAC 3 cut(s) 8, 465, 1513
HpyAV CCTTC 8 cut(s) 29, 101, 321, 560, 851, 1229, 1286, 1442
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 1 cut(s) 1123
HpyCH4V TGCA 5 cut(s) 277, 651, 751, 1461, 1662
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 227, 1614
HpyF3I CTNAG 7 cut(s) 101, 584, 691, 962, 1007, 1047, 1562
HpySE526I ACGT 1 cut(s) 1123
Hsp92II CATG 8 cut(s) 14, 755, 874, 1016, 1157, 1298, 1330, 1731
LmnI GCTCC 3 cut(s) 214, 425, 891
Lsp1109I GCAGC 1 cut(s) 735
LweI GCATC 2 cut(s) 660, 1006
MaeI CTAG 4 cut(s) 602, 944, 1223, 1232
MaeII ACGT 1 cut(s) 1123
MaeIII GTNAC 2 cut(s) 579, 1317
MfeI CAATTG 4 cut(s) 185, 468, 530, 1650
MflI RGATCY 6 cut(s) 297, 383, 400, 760, 1132, 1527
MhlI GDGCHC 1 cut(s) 1545
MlsI TGGCCA 1 cut(s) 1523
MluNI TGGCCA 1 cut(s) 1523
MlyI GAGTC 3 cut(s) 13, 158, 850
MmeI TCCRAC 1 cut(s) 1308
Mox20I TGGCCA 1 cut(s) 1523
MroXI GAANNNNTTC 2 cut(s) 970, 1355
MscI TGGCCA 1 cut(s) 1523
MseI TTAA 5 cut(s) 624, 645, 882, 1076, 1505
Msp20I TGGCCA 1 cut(s) 1523
MspA1I CMGCKG 1 cut(s) 930
MspCI CTTAAG 1 cut(s) 1504
MspR9I CCNGG 2 cut(s) 398, 1449
MunI CAATTG 4 cut(s) 185, 468, 530, 1650
Mva1269I GAATGC 2 cut(s) 221, 1640
MvaI CCWGG 2 cut(s) 398, 1449
MwoI GCNNNNNNNGC 3 cut(s) 41, 227, 1614
NlaIII CATG 8 cut(s) 14, 755, 874, 1016, 1157, 1298, 1330, 1731
NlaIV GGNNCC 5 cut(s) 71, 358, 592, 893, 1572
NmuCI GTSAC 2 cut(s) 579, 1317
NspI RCATGY 3 cut(s) 755, 1330, 1731
PceI AGGCCT 2 cut(s) 831, 1658
PciI ACATGT 2 cut(s) 1326, 1727
PctI GAATGC 2 cut(s) 221, 1640
PdmI GAANNNNTTC 2 cut(s) 970, 1355
PfeI GAWTC 6 cut(s) 15, 181, 256, 598, 1407, 1480
PflMI CCANNNNNTGG 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 1447
PkrI GCNGC 2 cut(s) 750, 932
PleI GAGTC 3 cut(s) 12, 157, 849
PpsI GAGTC 3 cut(s) 12, 157, 849
PscI ACATGT 2 cut(s) 1326, 1727
Psp6I CCWGG 2 cut(s) 396, 1447
PspGI CCWGG 2 cut(s) 396, 1447
PspN4I GGNNCC 5 cut(s) 71, 358, 592, 893, 1572
PspPI GGNCC 4 cut(s) 137, 591, 860, 1570
PsuI RGATCY 6 cut(s) 297, 383, 400, 760, 1132, 1527
RsaI GTAC 1 cut(s) 1732
RsaNI GTAC 1 cut(s) 1731
SaqAI TTAA 5 cut(s) 624, 645, 882, 1076, 1505
SatI GCNGC 2 cut(s) 749, 931
Sau96I GGNCC 4 cut(s) 137, 591, 860, 1570
SchI GAGTC 3 cut(s) 13, 158, 850
ScrFI CCNGG 2 cut(s) 398, 1449
SduI GDGCHC 1 cut(s) 1545
SfaNI GCATC 2 cut(s) 660, 1006
SinI GGWCC 1 cut(s) 1570
SmlI CTYRAG 5 cut(s) 1081, 1102, 1345, 1475, 1504
SmoI CTYRAG 5 cut(s) 1081, 1102, 1345, 1475, 1504
SseBI AGGCCT 2 cut(s) 831, 1658
SsiI CCGC 2 cut(s) 544, 930
SspI AATATT 2 cut(s) 643, 718
SspMI CTAG 4 cut(s) 602, 944, 1223, 1232
StuI AGGCCT 2 cut(s) 831, 1658
StyD4I CCNGG 2 cut(s) 396, 1447
StyI CCWWGG 1 cut(s) 1574
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 1 cut(s) 1126
TaqI TCGA 3 cut(s) 708, 844, 1211
TatI WGTACW 1 cut(s) 1730
TauI GCSGC 1 cut(s) 933
TfiI GAWTC 6 cut(s) 15, 181, 256, 598, 1407, 1480
Tru1I TTAA 5 cut(s) 624, 645, 882, 1076, 1505
Tru9I TTAA 5 cut(s) 624, 645, 882, 1076, 1505
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 2 cut(s) 579, 1317
TseI GCWGC 1 cut(s) 748
Tsp45I GTSAC 2 cut(s) 579, 1317
TspDTI ATGAA 5 cut(s) 567, 1268, 1283, 1302, 1647
TspGWI ACGGA 3 cut(s) 166, 567, 904
TspRI CASTG 1 cut(s) 592
Van91I CCANNNNNTGG 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 1504
VpaK11BI GGWCC 1 cut(s) 1570
XapI RAATTY 2 cut(s) 368, 798
XbaI TCTAGA 4 cut(s) 601, 943, 1222, 1231
XceI RCATGY 3 cut(s) 755, 1330, 1731
XmnI GAANNNNTTC 2 cut(s) 970, 1355
XspI CTAG 4 cut(s) 602, 944, 1223, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.