Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Forward (+)

4543638 .. 4546571

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTACTCCATCATTTTTTTCTTCATATAGGTAGAATGATGATTCCATTGGAATATGACCCTCACGACTTTTCCGTTGAAACCCACAAAGAAAGAAAGCAAAAAGACACAGGTATAGATATAATTACCCACCACCATAAAAGTAGAGACAGTTACAGTTTAAATTCCATTCTTACGTATAAAACACACGGAGTCACAAGCTCTGTGATCCAAATCTCCCAAATGGGTTTTCCCAAACTCTTCCTCTTCTTCTTCTTCCTCTTGGTCTCAAACCCATCTCGATCTTATGCTGCAGAGAATGTGAGTGTGACTCTCTACTACGAGACACTCTGTCCTTATTGTGCCGATTTCATAGTGAACCATTTGGCCAAGATCTTCGACAATGGGCTCATCTCCGTCGTCACCCTCAGAATGGTCCCTTGGGGTAACGCTTGGCTCAATTCCGATGGCTCCTTCGCCTGCCAGCATGGAACAGATGAATGCTTGCTCAACACAATTGAGGCCTGCACCATCACCATTTATCCTAATGTGAATCGGCATTTTAGATTCATCCAATGCGTTGAGCGGCTCACATTGCAGAACAAGCACAACAAATGGGCTGATTGCTTTGAAATGTCGAAGTTGGGGACTGTTCCTATCGATTGCTACAATAGTGGATATGGCAATCAGATTGAAACAAAATATGCAAAGGAAACTATTCAGCTTAATCCACCACATAAATTTGTGCCATGGCTGGTTATTAATAATAAACCACTTGCAGAGAACTATGATAAATTCATGACCTACATCTGTCAAGCATACAAAGGAAAATCTCCAGAAGCTTGCAGATCGATTCGCTCCAAGACTGAATCAAGTGGGAATGAAAGATCAATTCCTCAAGTTTGCTTAGTAGAACAAGGAAGAAACTCTACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

306

Amino Acids

35.06

Weight (kDa)

7.97

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	103 - 204	4.7e-31	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	565
AciI	CCGC	1 cut(s)	565
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	3 cut(s)	163, 719, 773
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	3 cut(s)	80, 611, 674
AhdI	GACNNNNNGTC	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	4 cut(s)	213, 245, 403, 435
AluBI	AGCT	3 cut(s)	201, 703, 821
AluI	AGCT	3 cut(s)	201, 703, 821
Alw26I	GTCTC	3 cut(s)	141, 271, 317
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	2 cut(s)	366, 501
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	3 cut(s)	163, 719, 773
AseI	ATTAAT	1 cut(s)	741
Asp700I	GAANNNNTTC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	394, 505
AvaII	GGWCC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	390
BarI	GAAGNNNNNNTAC	1 cut(s)	892
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	4 cut(s)	18, 283, 440, 518
BcoDI	GTCTC	3 cut(s)	141, 271, 317
BfmI	CTRYAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	2 cut(s)	291, 566
BlsI	GCNGC	2 cut(s)	292, 567
Bme18I	GGWCC	1 cut(s)	415
BmeRI	GACNNNNNGTC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	417, 451
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpmI	CTGGAG	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	861
Bsa29I	ATCGAT	2 cut(s)	639, 830
BsaAI	YACGTR	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	419, 728
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	572
Bse8I	GATNNNNATC	1 cut(s)	212
BseCI	ATCGAT	2 cut(s)	639, 830
BseDI	CCNNGG	2 cut(s)	419, 728
BseGI	GGATG	1 cut(s)	549
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	490
BshFI	GGCC	2 cut(s)	368, 503
BshVI	ATCGAT	2 cut(s)	639, 830
BslFI	GGGAC	2 cut(s)	401, 640
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	3 cut(s)	141, 271, 317
BsmFI	GGGAC	2 cut(s)	401, 640
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	368, 503
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	207, 281, 372, 827, 866
Bsp19I	CCATGG	1 cut(s)	728
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	2 cut(s)	368, 503
BspCNI	CTCAG	1 cut(s)	420
BspDI	ATCGAT	2 cut(s)	639, 830
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	417, 451
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	419, 728
BssMI	GATC	5 cut(s)	207, 281, 372, 827, 866
BssT1I	CCWWGG	2 cut(s)	419, 728
Bst4CI	ACNGT	3 cut(s)	152, 158, 631
Bst6I	CTCTTC	2 cut(s)	245, 251
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	5 cut(s)	460, 464, 485, 505, 823
BstDEI	CTNAG	2 cut(s)	407, 886
BstDSI	CCRYGG	1 cut(s)	728
BstF5I	GGATG	1 cut(s)	549
BstKTI	GATC	5 cut(s)	210, 284, 375, 830, 869
BstMAI	GTCTC	3 cut(s)	141, 271, 317
BstMBI	GATC	5 cut(s)	207, 281, 372, 827, 866
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 583
BstSFI	CTRYAG	1 cut(s)	291
BstSNI	TACGTA	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
Bsu15I	ATCGAT	2 cut(s)	639, 830
BsuRI	GGCC	2 cut(s)	368, 503
BsuTUI	ATCGAT	2 cut(s)	639, 830
BtgI	CCRYGG	1 cut(s)	728
BtsCI	GGATG	1 cut(s)	549
Cac8I	GCNNGC	5 cut(s)	460, 464, 485, 505, 823
CciI	TCATGA	1 cut(s)	777
Cfr13I	GGNCC	1 cut(s)	415
ClaI	ATCGAT	2 cut(s)	639, 830
CviAII	CATG	3 cut(s)	467, 729, 778
DdeI	CTNAG	2 cut(s)	407, 886
DpnI	GATC	5 cut(s)	209, 283, 374, 829, 868
DpnII	GATC	5 cut(s)	207, 281, 372, 827, 866
DraI	TTTAAA	1 cut(s)	162
DriI	GACNNNNNGTC	1 cut(s)	330
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	245, 251
Eam1105I	GACNNNNNGTC	1 cut(s)	330
EarI	CTCTTC	2 cut(s)	245, 251
Eco105I	TACGTA	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	419, 728
Eco147I	AGGCCT	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	419, 728
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	419, 728
FaeI	CATG	3 cut(s)	470, 732, 781
FaqI	GGGAC	2 cut(s)	401, 640
FatI	CATG	3 cut(s)	466, 728, 777
Fnu4HI	GCNGC	2 cut(s)	291, 566
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	291, 566
GluI	GCNGC	2 cut(s)	291, 566
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	2 cut(s)	368, 503
Hin1II	CATG	3 cut(s)	470, 732, 781
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	7 cut(s)	43, 192, 310, 532, 546, 832, 848
HphI	GGTGA	2 cut(s)	394, 505
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	410, 445, 669
Hpy188III	TCNNGA	4 cut(s)	65, 279, 778, 815
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	3 cut(s)	152, 158, 631
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	6 cut(s)	293, 507, 577, 686, 758, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 583
HpyF3I	CTNAG	2 cut(s)	407, 886
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	3 cut(s)	470, 732, 781
Kzo9I	GATC	5 cut(s)	207, 281, 372, 827, 866
LmnI	GCTCC	2 cut(s)	455, 842
LpnPI	CCDG	6 cut(s)	96, 472, 476, 517, 719, 828
Lsp1109I	GCAGC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	6 cut(s)	3, 152, 193, 307, 400, 425
MalI	GATC	5 cut(s)	209, 283, 374, 829, 868
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	5 cut(s)	207, 281, 372, 827, 866
MboII	GAAGA	8 cut(s)	14, 232, 238, 241, 244, 247, 367, 912
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	390
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	7 cut(s)	123, 163, 439, 495, 719, 773, 870
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	2 cut(s)	201, 304
MnlI	CCTC	6 cut(s)	72, 254, 269, 416, 493, 885
Mox20I	TGGCCA	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	4 cut(s)	161, 705, 741, 916
Msp20I	TGGCCA	1 cut(s)	368
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	574, 583
NcoI	CCATGG	1 cut(s)	728
NdeII	GATC	5 cut(s)	207, 281, 372, 827, 866
NlaIII	CATG	3 cut(s)	470, 732, 781
NlaIV	GGNNCC	2 cut(s)	417, 451
NmuCI	GTSAC	3 cut(s)	193, 307, 400
PagI	TCATGA	1 cut(s)	777
PceI	AGGCCT	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	5 cut(s)	43, 532, 546, 832, 848
PkrI	GCNGC	2 cut(s)	292, 567
PleI	GAGTC	2 cut(s)	200, 304
PpsI	GAGTC	2 cut(s)	200, 304
Ppu21I	YACGTR	1 cut(s)	177
PshBI	ATTAAT	1 cut(s)	741
PspN4I	GGNNCC	2 cut(s)	417, 451
PspPI	GGNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	372
SaqAI	TTAA	4 cut(s)	161, 705, 741, 916
SatI	GCNGC	2 cut(s)	291, 566
Sau3AI	GATC	5 cut(s)	207, 281, 372, 827, 866
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	201, 304
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	7 cut(s)	34, 115, 179, 203, 705, 785, 823
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	876
SmoI	CTYRAG	1 cut(s)	876
SnaBI	TACGTA	1 cut(s)	177
Sse9I	AATT	7 cut(s)	123, 163, 439, 495, 719, 773, 870
SseBI	AGGCCT	1 cut(s)	503
SsiI	CCGC	1 cut(s)	565
StuI	AGGCCT	1 cut(s)	503
StyI	CCWWGG	2 cut(s)	419, 728
TaaI	ACNGT	3 cut(s)	152, 158, 631
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	5 cut(s)	280, 378, 617, 639, 830
TasI	AATT	7 cut(s)	123, 163, 439, 495, 719, 773, 870
TauI	GCSGC	1 cut(s)	568
TfiI	GAWTC	5 cut(s)	43, 532, 546, 832, 848
Tru1I	TTAA	4 cut(s)	161, 705, 741, 916
Tru9I	TTAA	4 cut(s)	161, 705, 741, 916
TseFI	GTSAC	3 cut(s)	193, 307, 400
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	3 cut(s)	193, 307, 400
TspDTI	ATGAA	6 cut(s)	14, 340, 492, 538, 766, 876
TspGWI	ACGGA	3 cut(s)	64, 204, 385
VpaK11BI	GGWCC	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	741
XapI	RAATTY	3 cut(s)	163, 719, 773
XmnI	GAANNNNTTC	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.