Rw1G014510
ERF Family

Gamma-interferon-inducible lysosomal thiol

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
32337728 .. 32338730
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014510.1

Sequence Viewer

Length: 483 bp
ATGATTGATGTTCGAGTTATGTGCAACCATATGGTTATTTGTAATCCGCATTTTAGATTCATCCACTGTTTTGAGTGGCTCACATTGCCGAACAAACACAGTAAATGGGCCGATTGCTTTGAAATGTTGAGGTTGGGGACTGTACCTATCGATTGCTACAACAGCGGATATGGCAATCAGGTCAGAAACAAAATATGCAAAGGAACTGCTCAGCTTAATCCACCACATAGATTTGTGCCATGGCTGGTTGTCAATAATAAACCACTTGCAGAGGAAAATTTTATGGCCTATATCTGTAAGGCATACAAAGGAAAATCTCCAGAAGATTGTAGATCAATTCGCTACAAGACTGAATCAATTGGAAATGAAAAATATATTCCCCAAGTGTTTCTGGTGGCTTTCTCCGGGTACCTCACACAAAATTTTATACCGTCTGGGGTACCGATCCAATTCCTAAATCCTGTATCAAGAACACAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

18.56

Weight (kDa)

9.06

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 408, 439
AccB1I GGYRCC 2 cut(s) 408, 439
AciI CCGC 2 cut(s) 47, 165
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 2 cut(s) 277, 421
AfaI GTAC 3 cut(s) 144, 410, 441
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AlwI GGATC 1 cut(s) 439
AoxI GGCC 2 cut(s) 108, 285
ApoI RAATTY 2 cut(s) 277, 421
Asp718I GGTACC 2 cut(s) 408, 439
AspS9I GGNCC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 406
BanI GGYRCC 2 cut(s) 408, 439
BcgI CGANNNNNNTGC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 406
BlpI GCTNAGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 410, 441
BmrFI CCNGG 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 224
BshFI GGCC 2 cut(s) 110, 287
BshNI GGYRCC 2 cut(s) 408, 439
BshVI ATCGAT 1 cut(s) 150
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 2 cut(s) 110, 287
Bsp143I GATC 2 cut(s) 332, 444
Bsp1720I GCTNAGC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 2 cut(s) 47, 165
BspANI GGCC 2 cut(s) 110, 287
BspCNI CTCAG 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 410, 441
BspPI GGATC 1 cut(s) 439
BspT107I GGYRCC 2 cut(s) 408, 439
BsrDI GCAATG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 2 cut(s) 332, 444
BssT1I CCWWGG 1 cut(s) 239
Bst4CI ACNGT 4 cut(s) 68, 101, 142, 432
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 2 cut(s) 335, 447
BstMBI GATC 2 cut(s) 332, 444
BstMWI GCNNNNNNNGC 3 cut(s) 85, 162, 171
BstSCI CCNGG 1 cut(s) 404
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 2 cut(s) 110, 287
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 3 cut(s) 143, 409, 440
CviAII CATG 1 cut(s) 240
CviJI RGCY 6 cut(s) 79, 110, 214, 244, 287, 398
CviKI_1 RGCY 6 cut(s) 79, 110, 214, 244, 287, 398
CviQI GTAC 3 cut(s) 143, 409, 440
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 334, 446
DpnII GATC 2 cut(s) 332, 444
Eco130I CCWWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 243
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 239
FauNDI CATATG 1 cut(s) 30
FokI GGATG 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 2 cut(s) 110, 287
HapII CCGG 1 cut(s) 405
Hin1II CATG 1 cut(s) 243
HinfI GANTC 2 cut(s) 57, 353
HpaII CCGG 1 cut(s) 405
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 2 cut(s) 320, 468
HpyCH4III ACNGT 4 cut(s) 68, 101, 142, 432
HpyCH4V TGCA 3 cut(s) 24, 198, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 162, 171
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 1 cut(s) 243
KpnI GGTACC 2 cut(s) 412, 443
Kzo9I GATC 2 cut(s) 332, 444
LpnPI CCDG 7 cut(s) 164, 230, 333, 377, 418, 420, 474
MalI GATC 2 cut(s) 334, 446
MboI GATC 2 cut(s) 332, 444
MboII GAAGA 1 cut(s) 335
MfeI CAATTG 1 cut(s) 357
MluCI AATT 5 cut(s) 277, 336, 357, 421, 449
MnlI CCTC 3 cut(s) 123, 265, 422
MseI TTAA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 85, 162, 171
NciI CCSGG 1 cut(s) 406
NcoI CCATGG 1 cut(s) 239
NdeI CATATG 1 cut(s) 30
NdeII GATC 2 cut(s) 332, 444
NlaIII CATG 1 cut(s) 243
NlaIV GGNNCC 2 cut(s) 410, 441
PfeI GAWTC 2 cut(s) 57, 353
PspN4I GGNNCC 2 cut(s) 410, 441
PspPI GGNCC 1 cut(s) 108
RsaI GTAC 3 cut(s) 144, 410, 441
RsaNI GTAC 3 cut(s) 143, 409, 440
SaqAI TTAA 1 cut(s) 216
Sau3AI GATC 2 cut(s) 332, 444
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 406
SetI ASST 5 cut(s) 134, 148, 183, 216, 414
Sse9I AATT 5 cut(s) 277, 336, 357, 421, 449
SsiI CCGC 2 cut(s) 47, 165
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 4 cut(s) 68, 101, 142, 432
TaqI TCGA 2 cut(s) 13, 150
TasI AATT 5 cut(s) 277, 336, 357, 421, 449
TfiI GAWTC 2 cut(s) 57, 353
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 49, 381
TspRI CASTG 1 cut(s) 71
XapI RAATTY 2 cut(s) 277, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.