Rh4BG342200

protein phosphatase 2C 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001585
Physical Location & Seq
Forward (+)
50514064 .. 50519280
5217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG342200.1

Sequence Viewer

Length: 555 bp
ATGGCGGAGCGGAGGGGAGTTCAGCGCCAGTGGCGGCCCGTGCGGCGTCTCCTAGTGTCGGTGGCTAATGAGGATTCAAAGGTAGGATGGCTGATGTTTGCTGTGTTACTATTACCCAATTCCTCTTCTTCTGAGAGCATCAAAGTCTCTGTGGATTTGTACTACGAAACCCTTTGTCCTGATTGCTCTGATTTCATTGTAAAACATCTGATCAAGTTCTTCAACACCGGACTCATCTCCGCCGTTGACTTGAATCTCGTCCCCTACGGCAACGCCAAGCTCGGAACCAACGACACCATCACTTGCCAGTGTTGGGATCTGTTTAGCATTAGTATGCTTTTAAGGAGGGAGCGTGTTGCTGCAAGTGGCGGGGAAGTAGGGAGGTTGAGCATTGTTGGTGGTGTGGAGATTGGTCCTCTTCGTTGTTGGCCAGGAGGTTTATGCTTTTCTAGGTCGATTGGAGACATGGATGTTGTGGAGTTCATAGTTCCAATACCATATGTGAAACAAGTCAAGCTATCAAATAGAGGAGGGAGGACTCATAATTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

184

Amino Acids

20.46

Weight (kDa)

8.73

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GILT PF03227 51 - 103 4e-13 Gamma interferon inducible lysosomal thiol reductase (GILT)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 10
AciI CCGC 6 cut(s) 5, 10, 34, 43, 240, 369
AclWI GGATC 1 cut(s) 324
AcoI YGGCCR 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 58, 313
AgsI TTSAA 3 cut(s) 78, 223, 253
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 2 cut(s) 280, 517
AluI AGCT 2 cut(s) 280, 517
Alw26I GTCTC 3 cut(s) 53, 151, 456
AlwI GGATC 1 cut(s) 324
AoxI GGCC 2 cut(s) 35, 428
ApeKI GCWGC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 2 cut(s) 36, 413
AvaII GGWCC 1 cut(s) 413
BalI TGGCCA 1 cut(s) 430
BbvI GCAGC 1 cut(s) 346
BccI CCATC 2 cut(s) 81, 305
BceAI ACGGC 2 cut(s) 227, 283
BciT130I CCWGG 1 cut(s) 432
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 53, 151, 456
BfaI CTAG 2 cut(s) 53, 450
BfoI RGCGCY 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 3 cut(s) 35, 44, 360
BlsI GCNGC 3 cut(s) 36, 45, 361
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 36, 413
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 313
Bse1I ACTGG 2 cut(s) 28, 307
BseBI CCWGG 1 cut(s) 432
BseGI GGATG 2 cut(s) 92, 475
BseLI CCNNNNNNNGG 2 cut(s) 58, 313
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 28, 307
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 346
BshFI GGCC 2 cut(s) 37, 430
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 58, 313
BsmAI GTCTC 3 cut(s) 53, 151, 456
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 2 cut(s) 37, 430
Bsp143I GATC 2 cut(s) 210, 316
BspACI CCGC 6 cut(s) 5, 10, 34, 43, 240, 369
BspANI GGCC 2 cut(s) 37, 430
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 1 cut(s) 324
BsrBI CCGCTC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 28, 307
BssMI GATC 2 cut(s) 210, 316
BssNI GRCGYC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 432
Bst6I CTCTTC 2 cut(s) 130, 423
BstACI GRCGYC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 92, 475
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 2 cut(s) 213, 319
BstMAI GTCTC 3 cut(s) 53, 151, 456
BstMBI GATC 2 cut(s) 210, 316
BstMWI GCNNNNNNNGC 3 cut(s) 31, 40, 43
BstNI CCWGG 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 430
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuRI GGCC 2 cut(s) 37, 430
BtsCI GGATG 2 cut(s) 92, 475
BtsIMutI CAGTG 2 cut(s) 35, 314
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 36, 413
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 466
CviJI RGCY 6 cut(s) 37, 65, 91, 280, 430, 517
CviKI_1 RGCY 6 cut(s) 37, 65, 91, 280, 430, 517
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 212, 318
DpnII GATC 2 cut(s) 210, 316
EaeI YGGCCR 1 cut(s) 428
Eam1104I CTCTTC 2 cut(s) 130, 423
EarI CTCTTC 2 cut(s) 130, 423
EciI GGCGGA 2 cut(s) 20, 229
Eco47I GGWCC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 430
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 1 cut(s) 469
FaiI YATR 7 cut(s) 335, 442, 467, 485, 499, 501, 543
FaqI GGGAC 1 cut(s) 245
FatI CATG 1 cut(s) 465
FauI CCCGC 1 cut(s) 362
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 35, 44, 360
FokI GGATG 2 cut(s) 99, 482
Fsp4HI GCNGC 3 cut(s) 35, 44, 360
FspBI CTAG 2 cut(s) 53, 450
GlaI GCGC 1 cut(s) 26
GluI GCNGC 3 cut(s) 35, 44, 360
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 37, 430
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 1 cut(s) 469
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 4 cut(s) 74, 231, 253, 538
HpaII CCGG 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 5 cut(s) 133, 190, 210, 284, 554
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 247
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 40, 43
HpyF3I CTNAG 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 1 cut(s) 469
HspAI GCGC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 2 cut(s) 210, 316
LmnI GCTCC 2 cut(s) 7, 349
LpnPI CCDG 6 cut(s) 41, 192, 241, 320, 417, 444
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 1 cut(s) 147
MaeI CTAG 2 cut(s) 53, 450
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 212, 318
MbiI CCGCTC 1 cut(s) 10
MboI GATC 2 cut(s) 210, 316
MboII GAAGA 4 cut(s) 117, 120, 211, 410
MflI RGATCY 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 430
MluCI AATT 2 cut(s) 118, 544
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 2 cut(s) 225, 532
Mox20I TGGCCA 1 cut(s) 430
MscI TGGCCA 1 cut(s) 430
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 430
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 31, 40, 43
NdeI CATATG 1 cut(s) 499
NdeII GATC 2 cut(s) 210, 316
NlaIII CATG 1 cut(s) 469
NlaIV GGNNCC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 2 cut(s) 74, 253
PkrI GCNGC 3 cut(s) 36, 45, 361
PleI GAGTC 2 cut(s) 225, 532
PpsI GAGTC 2 cut(s) 225, 532
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 2 cut(s) 36, 413
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 3 cut(s) 35, 44, 360
Sau3AI GATC 2 cut(s) 210, 316
Sau96I GGNCC 2 cut(s) 36, 413
SchI GAGTC 2 cut(s) 225, 532
ScrFI CCNGG 1 cut(s) 432
SetI ASST 6 cut(s) 84, 282, 386, 439, 455, 519
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 2 cut(s) 118, 544
SsiI CCGC 6 cut(s) 5, 10, 34, 43, 240, 369
SspMI CTAG 2 cut(s) 53, 450
StyD4I CCNGG 1 cut(s) 430
TaqI TCGA 1 cut(s) 455
TasI AATT 2 cut(s) 118, 544
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 37, 46
TfiI GAWTC 2 cut(s) 74, 253
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 2 cut(s) 35, 314
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 184, 472
TspRI CASTG 2 cut(s) 35, 314
VpaK11BI GGWCC 1 cut(s) 413
XspI CTAG 2 cut(s) 53, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.