Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001585

Physical Location & Seq

Genomic Coordinates Reverse (-)

43497431 .. 43498451

Gene Structure 1021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG357100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGTTTTACCAAACTCTTCCTCTTCTTCTTCTTCCTGGTCTCAAACCCATCTCAATCTTATGTTGCTGAGAATGTGAGCGTGACTCTCTACTACGAGACTCTGTGTCCTTATTGTGCCGATTTCATAGTGAACCATTTGGCCAAGATCTTCAAGAATGGGCTCATCTCCATCGTCAATCTCAGAATGGTCCCTTGGGGCAACGCTTGGCTCAATTCCGATGGCTCCTTCACCTGCCAGCATGGAACAGATGAATGCTTGCTCAACACAATTGAGGCCTGCACCATCACCATCTATCCTAATGTGAATCGGCATTGTACTTTCATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04612 map04612

Pfam Domains

Protein Families

GILT

Protein Analysis

110

Amino Acids

12.56

Weight (kDa)

6.0

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GILT	PF03227	28 - 109	8e-27	Gamma interferon inducible lysosomal thiol reductase (GILT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01580
fragaria_vesca	FvH4_6g03531 FvH4_6g07560 FvH4_6g10801
malus_domestica	MD04G1164200.v1.1 MD11G1065000.v1.1
prunus_persica	Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1 Prupe.6G283300_v2.0.a1
pyrus_communis	pycom04g14660 pycom11g05510
rosa_chinensis	RchiOBHm_Chr3g0461861 RchiOBHm_Chr3g0461891 RchiOBHm_Chr3g0461941 RchiOBHm_Chr3g0462011 RchiOBHm_Chr5g0071111 RchiOBHm_Chr7g0217861
rosa_laevigata	RLG00000002432
rosa_multiflora	Rmu_sc0000540.1_g000030 Rmu_sc0000791.1_g000011 Rmu_sc0002003.1_g000003 Rmu_sc0003638.1_g000004 Rmu_sc0004530.1_g000001 Rmu_sc0005209.1_g000007 Rmu_sc0034388.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241640 Rroxscaffold_6G00417780
rosa_rugosa	Rorug01G0192300 Rorug07G0171400 Rorug07G0171500 Rorug07G0171600
rosa_samantha	Rh3AG112300 Rh3AG112400 Rh3CG117700 Rh3CG117800 Rh3CG118100 Rh3DG356800 Rh3DG357100 Rh4AG333400 Rh4BG342200 Rh4CG356700 Rh5AG465800 Rh5CG509200 Rh5DG496100 Rh7AG313600 Rh7BG304200 Rh7DG312100
rosa_wichuraiana	Rw0G007880 Rw1G014510 Rw7G026550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	154
AhdI	GACNNNNNGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
Alw26I	GTCTC	2 cut(s)	46, 92
AoxI	GGCC	2 cut(s)	141, 276
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	223, 280
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	165
BccI	CCATC	5 cut(s)	58, 179, 215, 293, 299
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	46, 92
BfuAI	ACCTGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	190
BmeRI	GACNNNNNGTC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	192, 226
BmrFI	CCNGG	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	60, 196
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	143, 278
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	46, 92
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	143, 278
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	143, 278
BspCNI	CTCAG	2 cut(s)	61, 195
BspLI	GGNNCC	2 cut(s)	192, 226
BspMI	ACCTGC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	23, 29
BstC8I	GCNNGC	3 cut(s)	239, 260, 280
BstDEI	CTNAG	2 cut(s)	69, 182
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	2 cut(s)	46, 92
BstMBI	GATC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	143, 278
BtsCI	GGATG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	239, 260, 280
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	5 cut(s)	143, 163, 211, 225, 278
CviKI_1	RGCY	5 cut(s)	143, 163, 211, 225, 278
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	2 cut(s)	69, 182
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DriI	GACNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	23, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	105
EarI	CTCTTC	2 cut(s)	23, 29
Eco130I	CCWWGG	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	1 cut(s)	245
FaiI	YATR	3 cut(s)	63, 128, 243
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	241
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	143, 278
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	3 cut(s)	85, 100, 307
HphI	GGTGA	2 cut(s)	223, 280
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	185, 220
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	282
HpyF3I	CTNAG	2 cut(s)	69, 182
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	23, 50, 247, 251, 292
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	6 cut(s)	10, 16, 19, 22, 25, 142
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	214, 270
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	79, 94
MnlI	CCTC	2 cut(s)	32, 268
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	192, 226
NmuCI	GTSAC	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	307
PleI	GAGTC	2 cut(s)	79, 94
PpsI	GAGTC	2 cut(s)	79, 94
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	192, 226
PspPI	GGNCC	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	79, 94
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	1 cut(s)	236
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	2 cut(s)	214, 270
SseBI	AGGCCT	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	194
TasI	AATT	2 cut(s)	214, 270
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	115, 267, 313
VpaK11BI	GGWCC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.