Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Forward (+)

3524677 .. 3525846

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTGACTACATCGTCACGAACCAAGTCAAACGGACCGGTGCTTCGTTCACAATCACCGTCAGGTCGATTTTGCGGTGGTTACTCAAGAGCCGTTCCGTCATCTTCTTCATCAGCTTTCGCTTCATCAACGAGTTCTAGCTTTTCATCTCCGTCGTCAGCTTTTTTCAGCAATCACCGTCATCACGAGAGCAATCACAGTCACCACCGATCTGCGTCACCGACTCGTGTGAATCTCTACACAGCGCAACCGATGTCTCAGTCGTTTCGTTACTCTCTCGATAGCAGATCTATATCTCCGACTAACAAATCGATCTCCGTTTCGAAGAATCAGCCACCGAGCCATAATCACAAGATCTCAAGGAGATGTATGTGTTCTCCGACGACGCATCCAGGATCTTTCAGATGCAGTCTACATAAGAACGTAGCGAATCCACATGGTCAAGGTACAGCTTCGTATACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTAATTCGCTGGTGAGAATTGGTGGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACTACTTTGATTCGACCTTCTTCGCATCATCTGAAAAGACGAGCTGCTTATCAGCCACGTCCTAGTCGACTCTCAATCATGGCGAAAGCTGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

23.76

Weight (kDa)

11.6

Isoelectric Point (pI)

75.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccI	GTMKAC	3 cut(s)	412, 458, 619
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	403
AfaI	GTAC	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	475, 527
AjiI	CACGTC	1 cut(s)	611
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	7 cut(s)	116, 141, 161, 452, 548, 596, 641
AluI	AGCT	7 cut(s)	116, 141, 161, 452, 548, 596, 641
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	596
ArsI	GACNNNNNNTTYG	2 cut(s)	27, 59
AsiGI	ACCGGT	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	7 cut(s)	16, 48, 167, 194, 210, 520, 550
AsuII	TTCGAA	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	35
BauI	CACGAG	2 cut(s)	185, 225
BbvI	GCAGC	1 cut(s)	583
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	138, 615
BglII	AGATCT	2 cut(s)	287, 354
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	35
BmgBI	CACGTC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	395, 397, 586
Bpu14I	TTCGAA	1 cut(s)	323
BpuEI	CTTGAG	2 cut(s)	70, 343
Bsa29I	ATCGAT	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bse118I	RCCGGY	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	311
BseGI	GGATG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	583
BshTI	ACCGGT	1 cut(s)	37
BshVI	ATCGAT	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	323
Bsp143I	GATC	6 cut(s)	209, 287, 312, 354, 395, 485
BspACI	CCGC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	311
BspPI	GGATC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	538
BspT104I	TTCGAA	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssMI	GATC	6 cut(s)	209, 287, 312, 354, 395, 485
BssNAI	GTATAC	1 cut(s)	459
BssSI	CACGAG	2 cut(s)	185, 225
Bst1107I	GTATAC	1 cut(s)	459
Bst2BI	CACGAG	2 cut(s)	185, 225
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	3 cut(s)	60, 179, 200
Bst6I	CTCTTC	1 cut(s)	538
BstBI	TTCGAA	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	6 cut(s)	212, 290, 315, 357, 398, 488
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	6 cut(s)	209, 287, 312, 354, 395, 485
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	583
BstX2I	RGATCY	3 cut(s)	287, 354, 395
BstYI	RGATCY	3 cut(s)	287, 354, 395
BstZ17I	GTATAC	1 cut(s)	459
Bsu15I	ATCGAT	1 cut(s)	311
BsuTUI	ATCGAT	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	506
BtrI	CACGTC	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	35
ClaI	ATCGAT	1 cut(s)	311
CpoI	CGGWCCG	1 cut(s)	35
CseI	GACGC	3 cut(s)	204, 394, 470
Csp6I	GTAC	1 cut(s)	447
CspAI	ACCGGT	1 cut(s)	37
CspI	CGGWCCG	1 cut(s)	35
CviAII	CATG	2 cut(s)	437, 631
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	6 cut(s)	211, 289, 314, 356, 397, 487
DpnII	GATC	6 cut(s)	209, 287, 312, 354, 395, 485
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	391
FaeI	CATG	2 cut(s)	440, 634
FaiI	YATR	8 cut(s)	293, 345, 371, 417, 438, 459, 479, 632
FatI	CATG	2 cut(s)	436, 630
FblI	GTMKAC	3 cut(s)	412, 458, 619
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	2 cut(s)	138, 615
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	597
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	3 cut(s)	204, 394, 470
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	2 cut(s)	440, 634
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	620
HindII	GTYRAC	1 cut(s)	620
HinfI	GANTC	6 cut(s)	223, 232, 328, 430, 562, 621
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	7 cut(s)	16, 48, 167, 194, 210, 520, 550
Hpy166II	GTNNAC	4 cut(s)	50, 413, 459, 620
Hpy188I	TCNGA	4 cut(s)	300, 381, 404, 585
Hpy188III	TCNNGA	4 cut(s)	18, 87, 185, 278
Hpy8I	GTNNAC	4 cut(s)	50, 413, 459, 620
Hpy99I	CGWCG	4 cut(s)	157, 385, 388, 486
HpyAV	CCTTC	2 cut(s)	521, 579
HpyCH4III	ACNGT	3 cut(s)	60, 179, 200
HpyCH4IV	ACGT	2 cut(s)	423, 610
HpyCH4V	TGCA	1 cut(s)	408
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	423, 610
Hsp92II	CATG	2 cut(s)	440, 634
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	6 cut(s)	209, 287, 312, 354, 395, 485
LguI	GCTCTTC	1 cut(s)	538
LpnPI	CCDG	5 cut(s)	48, 51, 378, 405, 491
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	3 cut(s)	395, 397, 586
MaeI	CTAG	2 cut(s)	138, 615
MaeII	ACGT	2 cut(s)	423, 610
MaeIII	GTNAC	6 cut(s)	4, 15, 80, 200, 216, 269
MalI	GATC	6 cut(s)	211, 289, 314, 356, 397, 487
MboI	GATC	6 cut(s)	209, 287, 312, 354, 395, 485
MboII	GAAGA	5 cut(s)	96, 99, 337, 555, 564
MflI	RGATCY	3 cut(s)	287, 354, 395
MluCI	AATT	3 cut(s)	499, 513, 649
MlyI	GAGTC	2 cut(s)	217, 615
MmeI	TCCRAC	2 cut(s)	323, 404
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
NdeII	GATC	6 cut(s)	209, 287, 312, 354, 395, 485
NlaIII	CATG	2 cut(s)	440, 634
NmuCI	GTSAC	4 cut(s)	4, 15, 200, 216
NspV	TTCGAA	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	2 cut(s)	461, 616
PfeI	GAWTC	4 cut(s)	232, 328, 430, 562
PfoI	TCCNGGA	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	2 cut(s)	217, 615
PpsI	GAGTC	2 cut(s)	217, 615
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	3 cut(s)	287, 354, 395
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
Rsr2I	CGGWCCG	1 cut(s)	35
RsrII	CGGWCCG	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	618
SapI	GCTCTTC	1 cut(s)	538
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	6 cut(s)	209, 287, 312, 354, 395, 485
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	217, 615
ScrFI	CCNGG	1 cut(s)	393
SfaNI	GCATC	3 cut(s)	395, 397, 586
SfuI	TTCGAA	1 cut(s)	323
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	85, 358
SmoI	CTYRAG	2 cut(s)	85, 358
Sse9I	AATT	3 cut(s)	499, 513, 649
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	2 cut(s)	138, 615
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	3 cut(s)	60, 179, 200
TaiI	ACGT	2 cut(s)	426, 613
TaqI	TCGA	7 cut(s)	67, 279, 311, 323, 484, 565, 619
TasI	AATT	3 cut(s)	499, 513, 649
TfiI	GAWTC	4 cut(s)	232, 328, 430, 562
TseFI	GTSAC	4 cut(s)	4, 15, 200, 216
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	4 cut(s)	4, 15, 200, 216
TspDTI	ATGAA	3 cut(s)	99, 114, 135
TspGWI	ACGGA	4 cut(s)	48, 87, 141, 307
VpaK11BI	GGWCC	1 cut(s)	35
XmiI	GTMKAC	3 cut(s)	412, 458, 619
XspI	CTAG	2 cut(s)	138, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.