Rroxscaffold_2G00110390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001520
Physical Location & Seq
Reverse (-)
34684301 .. 34684965
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110390.1

Sequence Viewer

Length: 588 bp
ATGGCGGTGATTTCTTCAACGTCGTCGAAAGAAAAACGTTTCTCCGCCACTTCTTCACAATTCTTGACGCGCCCCGCCTCCTCCACGCGCCACCCCGTGCCCGGCAACTCCATTTCCACCTCATTGGCCTCCTCCGTCCGGTTCGCGGTCGACCTTCCGAGCACTCCCAGCCGCTCGATGACGGTCAAGAAGCCGTTGCCGTTCGCCGACAACGTCAAGAACCAAAGCAACGGCCAGAAGAGCGGGACGCCGGTGGCTGGCACCAAGAAAGCGTGCCTCTGTTCCCCTTCGACGCACCCAGGCTCCTTCCGCTGCGCCATGCATAGGAACTCGCCGCGTGGCGGCCCTAGCCTATCGAACTCGAGCAGCCAAACGGCGTCGTCGTACAACTCGAATATCAGGCTCAACTATCGAAGGTCGGCGATGAATAACTCGTTGGTGAGAATCGGAGGAGTGGAAGGGGACTTGGTGAAGCGAGCTTTGGCGGCTCTGATCAGACCCACGGCTCACAATCAGCGGCGCCGAGCAGATTTCCAACCCAAGCCGAGCCGGCTCTCCGTAATGTCCAAAACGGCGTCGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.76

Weight (kDa)

11.73

Isoelectric Point (pI)

66.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 260, 519
AccBSI CCGCTC 2 cut(s) 174, 243
AccI GTMKAC 1 cut(s) 150
AccII CGCG 4 cut(s) 70, 88, 146, 337
AclI AACGTT 1 cut(s) 37
AcoI YGGCCR 1 cut(s) 232
AcyI GRCGYC 4 cut(s) 248, 377, 520, 575
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 6 cut(s) 101, 138, 145, 257, 324, 341
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 4 cut(s) 419, 451, 464, 496
AluBI AGCT 1 cut(s) 479
AluI AGCT 1 cut(s) 479
Alw21I GWGCWC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 361
AoxI GGCC 3 cut(s) 126, 232, 343
ApeKI GCWGC 2 cut(s) 312, 366
AspLEI GCGC 4 cut(s) 72, 90, 317, 522
AspS9I GGNCC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 3 cut(s) 19, 451, 481
AvaI CYCGRG 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 102
BanI GGYRCC 2 cut(s) 260, 519
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 299, 378
BceAI ACGGC 5 cut(s) 178, 184, 247, 390, 519
BciT130I CCWGG 1 cut(s) 300
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 1 cut(s) 102
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 523
BglI GCCNNNNNGGC 1 cut(s) 550
BisI GCNGC 7 cut(s) 172, 313, 335, 343, 367, 486, 518
BlsI GCNGC 7 cut(s) 173, 314, 336, 344, 368, 487, 519
Bme1390I CCNGG 2 cut(s) 102, 300
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 262, 304, 521
BmrFI CCNGG 2 cut(s) 102, 300
BpuMI CCSGG 1 cut(s) 102
BsaHI GRCGYC 4 cut(s) 248, 377, 520, 575
BsaJI CCNNGG 2 cut(s) 298, 501
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 6 cut(s) 101, 138, 145, 257, 324, 341
Bse118I RCCGGY 2 cut(s) 250, 549
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 298, 501
BseLI CCNNNNNNNGG 6 cut(s) 101, 138, 145, 257, 324, 341
BseRI GAGGAG 3 cut(s) 70, 121, 465
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 2 cut(s) 299, 378
BseYI CCCAGC 1 cut(s) 167
Bsh1236I CGCG 4 cut(s) 70, 88, 146, 337
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 128, 234, 345
BshNI GGYRCC 2 cut(s) 260, 519
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 4 cut(s) 102, 139, 251, 550
BslFI GGGAC 2 cut(s) 259, 476
BslI CCNNNNNNNGG 6 cut(s) 101, 138, 145, 257, 324, 341
BsmFI GGGAC 2 cut(s) 259, 476
BsnI GGCC 3 cut(s) 128, 234, 345
BsoBI CYCGRG 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 102, 164
Bsp143I GATC 1 cut(s) 492
BspANI GGCC 3 cut(s) 128, 234, 345
BspFNI CGCG 4 cut(s) 70, 88, 146, 337
BspLI GGNNCC 3 cut(s) 262, 304, 521
BspQI GCTCTTC 1 cut(s) 233
BspT107I GGYRCC 2 cut(s) 260, 519
BsrBI CCGCTC 2 cut(s) 174, 243
BsrFI RCCGGY 2 cut(s) 250, 549
BssAI RCCGGY 2 cut(s) 250, 549
BssECI CCNNGG 2 cut(s) 298, 501
BssMI GATC 1 cut(s) 492
BssNI GRCGYC 4 cut(s) 248, 377, 520, 575
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 233
BstACI GRCGYC 4 cut(s) 248, 377, 520, 575
BstC8I GCNNGC 4 cut(s) 259, 274, 477, 551
BstDSI CCRYGG 1 cut(s) 501
BstFNI CGCG 4 cut(s) 70, 88, 146, 337
BstH2I RGCGCY 1 cut(s) 523
BstHHI GCGC 4 cut(s) 72, 90, 317, 522
BstKTI GATC 1 cut(s) 495
BstMBI GATC 1 cut(s) 492
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 6 cut(s) 168, 240, 309, 348, 485, 550
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 100, 298
BstSLI GKGCMC 1 cut(s) 102
BstUI CGCG 4 cut(s) 70, 88, 146, 337
BstV1I GCAGC 2 cut(s) 299, 378
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 3 cut(s) 128, 234, 345
BtgI CCRYGG 1 cut(s) 501
BtgZI GCGATG 1 cut(s) 437
Cac8I GCNNGC 4 cut(s) 259, 274, 477, 551
CfoI GCGC 4 cut(s) 72, 90, 317, 522
Cfr10I RCCGGY 2 cut(s) 250, 549
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 5 cut(s) 76, 256, 301, 366, 564
Csp6I GTAC 1 cut(s) 385
CviAII CATG 1 cut(s) 319
CviQI GTAC 1 cut(s) 385
DinI GGCGCC 1 cut(s) 521
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
EciI GGCGGA 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 521
EheI GGCGCC 1 cut(s) 521
FaeI CATG 1 cut(s) 322
FaiI YATR 2 cut(s) 320, 324
FaqI GGGAC 2 cut(s) 259, 476
FatI CATG 1 cut(s) 318
FauI CCCGC 2 cut(s) 82, 236
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 7 cut(s) 172, 313, 335, 343, 367, 486, 518
Fsp4HI GCNGC 7 cut(s) 172, 313, 335, 343, 367, 486, 518
FspBI CTAG 1 cut(s) 348
GlaI GCGC 4 cut(s) 71, 89, 316, 521
GluI GCNGC 7 cut(s) 172, 313, 335, 343, 367, 486, 518
GsaI CCCAGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 523
HaeIII GGCC 3 cut(s) 128, 234, 345
HapII CCGG 4 cut(s) 102, 139, 251, 550
HgaI GACGC 5 cut(s) 76, 256, 301, 366, 564
HhaI GCGC 4 cut(s) 72, 90, 317, 522
Hin1I GRCGYC 4 cut(s) 248, 377, 520, 575
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 4 cut(s) 70, 88, 315, 520
HinP1I GCGC 4 cut(s) 70, 88, 315, 520
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 444
HpaII CCGG 4 cut(s) 102, 139, 251, 550
HphI GGTGA 3 cut(s) 19, 451, 481
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 4 cut(s) 159, 449, 492, 497
Hpy188III TCNNGA 4 cut(s) 64, 187, 217, 585
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 6 cut(s) 25, 28, 295, 382, 385, 580
HpyAV CCTTC 5 cut(s) 164, 297, 316, 408, 452
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 3 cut(s) 20, 37, 213
HpyCH4V TGCA 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 240, 309, 348, 485, 550
HpySE526I ACGT 3 cut(s) 20, 37, 213
Hsp92I GRCGYC 4 cut(s) 248, 377, 520, 575
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 4 cut(s) 70, 88, 315, 520
KasI GGCGCC 1 cut(s) 519
KroI GCCGGC 1 cut(s) 549
KroNI GCCGGC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 1 cut(s) 492
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 2 cut(s) 299, 378
MaeI CTAG 1 cut(s) 348
MaeII ACGT 3 cut(s) 20, 37, 213
MalI GATC 1 cut(s) 494
MbiI CCGCTC 2 cut(s) 174, 243
MboI GATC 1 cut(s) 492
MboII GAAGA 3 cut(s) 6, 45, 250
MhlI GDGCHC 2 cut(s) 102, 164
MluCI AATT 1 cut(s) 59
Mly113I GGCGCC 1 cut(s) 520
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 7 cut(s) 88, 91, 130, 139, 142, 287, 443
Mph1103I ATGCAT 1 cut(s) 324
MroNI GCCGGC 1 cut(s) 549
MspA1I CMGCKG 2 cut(s) 312, 517
MspI CCGG 4 cut(s) 102, 139, 251, 550
MspR9I CCNGG 2 cut(s) 102, 300
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 4 cut(s) 70, 88, 146, 337
MwoI GCNNNNNNNGC 6 cut(s) 168, 240, 309, 348, 485, 550
NaeI GCCGGC 1 cut(s) 551
NarI GGCGCC 1 cut(s) 520
NciI CCSGG 1 cut(s) 102
NdeII GATC 1 cut(s) 492
NgoMIV GCCGGC 1 cut(s) 549
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 3 cut(s) 262, 304, 521
NmeAIII GCCGAG 2 cut(s) 548, 570
NsiI ATGCAT 1 cut(s) 324
PaeR7I CTCGAG 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 233
PcsI WCGNNNNNNNCGW 3 cut(s) 210, 380, 389
PdiI GCCGGC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 444
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 7 cut(s) 173, 314, 336, 344, 368, 487, 519
PluTI GGCGCC 1 cut(s) 523
Psp1406I AACGTT 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 3 cut(s) 262, 304, 521
PspPI GGNCC 1 cut(s) 344
PspXI VCTCGAGB 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 212
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
SalI GTCGAC 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 233
SatI GCNGC 7 cut(s) 172, 313, 335, 343, 367, 486, 518
Sau3AI GATC 1 cut(s) 492
Sau96I GGNCC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 102, 300
SduI GDGCHC 2 cut(s) 102, 164
SetI ASST 7 cut(s) 23, 40, 122, 156, 216, 419, 481
SfoI GGCGCC 1 cut(s) 521
Sfr274I CTCGAG 1 cut(s) 361
SgrAI CRCCGGYG 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 1 cut(s) 59
SspDI GGCGCC 1 cut(s) 519
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 100, 298
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 3 cut(s) 23, 40, 216
TaqI TCGA 8 cut(s) 26, 150, 176, 290, 356, 362, 392, 412
TasI AATT 1 cut(s) 59
TauI GCSGC 5 cut(s) 174, 337, 345, 488, 520
TfiI GAWTC 1 cut(s) 444
TseI GCWGC 2 cut(s) 312, 366
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 2 cut(s) 124, 547
Tth111I GACNNNGTC 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.