Prupe.1G485100_v2.0.a1

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001520
Physical Location & Seq
Reverse (-)
40405249 .. 40409506
4258 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G485100.2

Sequence Viewer

Length: 675 bp
ATGGCTACCGCATCGTCTTCATCATCGAGGGCGAGAACCAGGTCAAGCGGACCAGTTCTTCGCTCGCTCTCACCTTCCGGAAGGTTTTACACAGCCTCGAATGCCTCCATCTCATCTTCCGCTTCGGGCTTTGCTTCGTCCACAAGCTCTAGCTTTTCATCTCCGGCCTCCGCCTTCTTCAGCCACCACAAGGACCACCACTACTACAATCAGCAGATCAACCACCACCATCACCACCGATCCGCTTCCCCGACTCGTGTCAACCTGTACACCTCCTCCGCCCCTTCTCCATCCGTCCGCTTCTCCATCGACCACCGTTCAATCTCTCCGAACCACTCGAATCGATCCATCACCGTTTCGAAGAAAAATGGCCCGATCTCGATGCCTAAGAAGACCTGTATGTGCTCGCCGACGTCGCATCCGGGGTCGTTTCGCTGCAGCCTTCACAAGAACATCGGTGGAGGTCACAACGCAGCTCCATATCCGACGAACAGGCTGAACATGCGCAGATCTGCTATGACGAACTCGCTGGTTCGTATCGGTGGAGTCGAAGGTGAGTGGGTGAAGCGAGCCTTAACCGCTCTGATCCGCCCTTGCGCCCACCAGCAGAGGCGAAGAGCCGGCTTCCAGCCGAGGCCGAGCCGGCTCTCGGCCATGTCCACCGCCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.33

Weight (kDa)

11.69

Isoelectric Point (pI)

76.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 416
Acc16I TGCGCA 1 cut(s) 506
AccBSI CCGCTC 1 cut(s) 581
AccIII TCCGGA 1 cut(s) 77
AclWI GGATC 3 cut(s) 234, 339, 580
AcoI YGGCCR 1 cut(s) 651
AcuI CTGAAG 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 190, 649
AgsI TTSAA 1 cut(s) 321
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 3 cut(s) 147, 153, 476
AluI AGCT 3 cut(s) 147, 153, 476
Alw21I GWGCWC 1 cut(s) 407
AlwI GGATC 3 cut(s) 234, 339, 580
Aor13HI TCCGGA 1 cut(s) 77
AoxI GGCC 4 cut(s) 165, 370, 635, 651
ApeKI GCWGC 3 cut(s) 435, 438, 473
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspLEI GCGC 2 cut(s) 507, 599
AspS9I GGNCC 3 cut(s) 50, 193, 371
AsuC2I CCSGG 1 cut(s) 423
AsuHPI GGTGA 5 cut(s) 63, 224, 343, 566, 574
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 2 cut(s) 50, 193
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 9, 398
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 422, 450, 485
BccI CCATC 5 cut(s) 116, 237, 298, 314, 356
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 1 cut(s) 40
BcnI CCSGG 1 cut(s) 423
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 643
BglII AGATCT 1 cut(s) 509
BisI GCNGC 3 cut(s) 436, 439, 474
BlsI GCNGC 3 cut(s) 437, 440, 475
Bme1390I CCNGG 2 cut(s) 40, 423
Bme18I GGWCC 2 cut(s) 50, 193
BmgT120I GGNCC 3 cut(s) 50, 193, 371
BmrFI CCNGG 2 cut(s) 40, 423
BmsI GCATC 3 cut(s) 20, 372, 427
BoxI GACNNNNGTC 1 cut(s) 257
BpiI GAAGAC 2 cut(s) 9, 398
Bpu14I TTCGAA 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 343
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 422, 632
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 649
Bse118I RCCGGY 2 cut(s) 620, 642
Bse1I ACTGG 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 77
BseBI CCWGG 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 422, 632
BseGI GGATG 2 cut(s) 290, 418
BseLI CCNNNNNNNGG 2 cut(s) 190, 649
BseNI ACTGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 265
BseXI GCAGC 3 cut(s) 422, 450, 485
BshFI GGCC 4 cut(s) 167, 372, 637, 653
BshVI ATCGAT 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 407
BsiSI CCGG 5 cut(s) 78, 164, 422, 621, 643
BslI CCNNNNNNNGG 2 cut(s) 190, 649
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 4 cut(s) 167, 372, 637, 653
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 407
Bsp13I TCCGGA 1 cut(s) 77
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 6 cut(s) 216, 239, 344, 375, 509, 585
BspANI GGCC 4 cut(s) 167, 372, 637, 653
BspDI ATCGAT 1 cut(s) 343
BspEI TCCGGA 1 cut(s) 77
BspMAI CTGCAG 1 cut(s) 440
BspPI GGATC 3 cut(s) 234, 339, 580
BspQI GCTCTTC 1 cut(s) 610
BspT104I TTCGAA 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 581
BsrFI RCCGGY 2 cut(s) 620, 642
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 1 cut(s) 53
BssAI RCCGGY 2 cut(s) 620, 642
BssECI CCNNGG 2 cut(s) 422, 632
BssMI GATC 6 cut(s) 216, 239, 344, 375, 509, 585
BssNI GRCGYC 1 cut(s) 413
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 317, 355
Bst6I CTCTTC 1 cut(s) 610
BstACI GRCGYC 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 5 cut(s) 65, 407, 570, 622, 644
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 290, 418
BstHHI GCGC 2 cut(s) 507, 599
BstKTI GATC 6 cut(s) 219, 242, 347, 378, 512, 588
BstMBI GATC 6 cut(s) 216, 239, 344, 375, 509, 585
BstMWI GCNNNNNNNGC 5 cut(s) 101, 415, 502, 578, 643
BstNI CCWGG 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 505
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 38, 421
BstSFI CTRYAG 1 cut(s) 436
BstV1I GCAGC 3 cut(s) 422, 450, 485
BstV2I GAAGAC 2 cut(s) 9, 398
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
Bsu15I ATCGAT 1 cut(s) 343
BsuRI GGCC 4 cut(s) 167, 372, 637, 653
BsuTUI ATCGAT 1 cut(s) 343
BtsCI GGATG 2 cut(s) 290, 418
Cac8I GCNNGC 5 cut(s) 65, 407, 570, 622, 644
CfoI GCGC 2 cut(s) 507, 599
Cfr10I RCCGGY 2 cut(s) 620, 642
Cfr13I GGNCC 3 cut(s) 50, 193, 371
ClaI ATCGAT 1 cut(s) 343
CsiI ACCWGGT 1 cut(s) 38
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 502, 655
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 387
DpnI GATC 6 cut(s) 218, 241, 346, 377, 511, 587
DpnII GATC 6 cut(s) 216, 239, 344, 375, 509, 585
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
EciI GGCGGA 3 cut(s) 160, 268, 578
Eco47I GGWCC 2 cut(s) 50, 193
Eco57I CTGAAG 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 505, 658
FaiI YATR 5 cut(s) 401, 481, 503, 518, 656
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FatI CATG 2 cut(s) 501, 654
Fnu4HI GCNGC 3 cut(s) 436, 439, 474
FokI GGATG 2 cut(s) 277, 405
Fsp4HI GCNGC 3 cut(s) 436, 439, 474
FspBI CTAG 1 cut(s) 150
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 2 cut(s) 506, 598
GluI GCNGC 3 cut(s) 436, 439, 474
HaeIII GGCC 4 cut(s) 167, 372, 637, 653
HapII CCGG 5 cut(s) 78, 164, 422, 621, 643
HhaI GCGC 2 cut(s) 507, 599
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 2 cut(s) 505, 658
Hin6I GCGC 2 cut(s) 505, 597
HinP1I GCGC 2 cut(s) 505, 597
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 3 cut(s) 253, 340, 546
HpaII CCGG 5 cut(s) 78, 164, 422, 621, 643
HphI GGTGA 5 cut(s) 63, 224, 343, 566, 574
Hpy166II GTNNAC 4 cut(s) 141, 262, 270, 660
Hpy188I TCNGA 3 cut(s) 330, 486, 585
Hpy188III TCNNGA 2 cut(s) 78, 379
Hpy8I GTNNAC 4 cut(s) 141, 262, 270, 660
Hpy99I CGWCG 3 cut(s) 415, 418, 490
HpyAV CCTTC 6 cut(s) 75, 84, 184, 294, 452, 545
HpyCH4III ACNGT 2 cut(s) 317, 355
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 1 cut(s) 438
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 415, 502, 578, 643
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 2 cut(s) 505, 658
HspAI GCGC 2 cut(s) 505, 597
Kpn2I TCCGGA 1 cut(s) 77
KroI GCCGGC 2 cut(s) 620, 642
KroNI GCCGGC 2 cut(s) 622, 644
Kzo9I GATC 6 cut(s) 216, 239, 344, 375, 509, 585
LguI GCTCTTC 1 cut(s) 610
LmnI GCTCC 1 cut(s) 481
Lsp1109I GCAGC 3 cut(s) 422, 450, 485
LweI GCATC 3 cut(s) 20, 372, 427
MabI ACCWGGT 1 cut(s) 38
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 464
MalI GATC 6 cut(s) 218, 241, 346, 377, 511, 587
MbiI CCGCTC 1 cut(s) 581
MboI GATC 6 cut(s) 216, 239, 344, 375, 509, 585
MboII GAAGA 7 cut(s) 9, 50, 108, 169, 373, 403, 627
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 407
MlyI GAGTC 2 cut(s) 247, 555
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 9 cut(s) 21, 106, 115, 178, 283, 286, 455, 603, 627
MroI TCCGGA 1 cut(s) 77
MroNI GCCGGC 2 cut(s) 620, 642
MseI TTAA 1 cut(s) 575
MspI CCGG 5 cut(s) 78, 164, 422, 621, 643
MspR9I CCNGG 2 cut(s) 40, 423
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 5 cut(s) 101, 415, 502, 578, 643
NaeI GCCGGC 2 cut(s) 622, 644
NciI CCSGG 1 cut(s) 423
NdeII GATC 6 cut(s) 216, 239, 344, 375, 509, 585
NgoMIV GCCGGC 2 cut(s) 620, 642
NlaIII CATG 2 cut(s) 505, 658
NmeAIII GCCGAG 3 cut(s) 629, 657, 663
NmuCI GTSAC 1 cut(s) 464
NsbI TGCGCA 1 cut(s) 506
NspI RCATGY 1 cut(s) 505
NspV TTCGAA 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PctI GAATGC 1 cut(s) 106
PdiI GCCGGC 2 cut(s) 622, 644
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 3 cut(s) 437, 440, 475
PleI GAGTC 2 cut(s) 247, 554
PpsI GAGTC 2 cut(s) 247, 554
PshAI GACNNNNGTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspPI GGNCC 3 cut(s) 50, 193, 371
PstI CTGCAG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 610
SaqAI TTAA 1 cut(s) 575
SatI GCNGC 3 cut(s) 436, 439, 474
Sau3AI GATC 6 cut(s) 216, 239, 344, 375, 509, 585
Sau96I GGNCC 3 cut(s) 50, 193, 371
SchI GAGTC 2 cut(s) 247, 555
ScrFI CCNGG 2 cut(s) 40, 423
SduI GDGCHC 1 cut(s) 407
SexAI ACCWGGT 1 cut(s) 38
SfaNI GCATC 3 cut(s) 20, 372, 427
SfcI CTRYAG 1 cut(s) 436
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 2 cut(s) 50, 193
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 38, 421
TaaI ACNGT 2 cut(s) 317, 355
TaiI ACGT 1 cut(s) 416
TaqI TCGA 8 cut(s) 26, 98, 309, 338, 343, 359, 380, 549
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 3 cut(s) 435, 438, 473
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 9, 147
TspGWI ACGGA 1 cut(s) 283
VpaK11BI GGWCC 2 cut(s) 50, 193
XceI RCATGY 1 cut(s) 505
XspI CTAG 1 cut(s) 150
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.