RLG00000019383

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001520
Physical Location & Seq
Forward (+)
51271836 .. 51272495
660 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019383

Sequence Viewer

Length: 660 bp
ATGGCGGTGATTTCTTCAACGTCGTCAAAAGAAAAAACGGTCTTGGAGCACTGTTACAGATCTCGGCCTCTCCTACCCCTATCGGCTTATGGCTTCGCGTCGTCGACCTCATCCAGTTTCTCCGCCACATCTTCACAATTCTTGACGCCCCCCTCCTCCTCCACGCTCCACCCCGTGCCCGGCAACTCCATTTCCACCTCATTGTCCTCCTCCGTCCGGTTCGCGGTCGACCTCCCGAGCACTCCCAGCCGTTCGATGACGGTCAAGAAACCGTTCGCCGACAACGGCAAGAACCAAAGCAACGGCCAGAAGAGCGGGACGCCGGTGGCTGGCGCCAAGAAAGCGTGCCTCTGTTCCCCTTCGACGCACCCCGGCTCCTTCCGCTGCGCCATGCATAGGAACGCGCCACGTGGCGGCTCTAGCTTAACGAACTCGAGCAGCCAAACGGCGTCGTCGTACAACTCGAATATCAGGCTCAACTATCGAAGGTCGGCGATGAATAACTCGTTGGTGAGAATCGGAGGAGTGGAAGGGGACTTGGTGAAGCGGGCTTTGGCGGCTCTGATCAGACCGACGGCTCACAATCAGCGGCGCCGAGCCGATTTCCAACCCAGACCGAGCCGGCTCTCCGTAATGTCCAAAACGGCGTCGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

23.18

Weight (kDa)

11.26

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 591
AccBSI CCGCTC 1 cut(s) 315
AccI GTMKAC 2 cut(s) 104, 228
AccII CGCG 3 cut(s) 98, 224, 404
AciI CCGC 9 cut(s) 5, 123, 224, 315, 382, 414, 547, 557, 589
AcoI YGGCCR 1 cut(s) 304
AcvI CACGTG 1 cut(s) 410
AcyI GRCGYC 6 cut(s) 146, 320, 333, 449, 592, 647
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 6 cut(s) 179, 216, 223, 329, 396, 413
AgsI TTSAA 1 cut(s) 18
AjuI GAANNNNNNNTTGG 4 cut(s) 491, 523, 536, 568
AluBI AGCT 1 cut(s) 423
AluI AGCT 1 cut(s) 423
Alw21I GWGCWC 2 cut(s) 51, 242
Ama87I CYCGRG 2 cut(s) 235, 433
AoxI GGCC 2 cut(s) 65, 304
ApeKI GCWGC 2 cut(s) 384, 438
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 4 cut(s) 335, 389, 406, 594
AsuC2I CCSGG 2 cut(s) 180, 372
AsuHPI GGTGA 3 cut(s) 19, 523, 553
AvaI CYCGRG 2 cut(s) 235, 433
BaeGI GKGCMC 1 cut(s) 180
BanI GGYRCC 2 cut(s) 332, 591
BbrPI CACGTG 1 cut(s) 410
Bbv12I GWGCWC 2 cut(s) 51, 242
BbvI GCAGC 2 cut(s) 371, 450
BceAI ACGGC 5 cut(s) 234, 301, 319, 462, 591
BclI TGATCA 1 cut(s) 564
BcnI CCSGG 2 cut(s) 180, 372
BfaI CTAG 1 cut(s) 420
BfoI RGCGCY 2 cut(s) 336, 595
BglII AGATCT 1 cut(s) 59
BisI GCNGC 5 cut(s) 385, 415, 439, 558, 590
BlsI GCNGC 5 cut(s) 386, 416, 440, 559, 591
Bme1390I CCNGG 2 cut(s) 180, 372
BmeT110I CYCGRG 2 cut(s) 235, 433
BmiI GGNNCC 3 cut(s) 334, 376, 593
BmrFI CCNGG 2 cut(s) 180, 372
BpuMI CCSGG 2 cut(s) 180, 372
BsaAI YACGTR 1 cut(s) 410
BsaHI GRCGYC 6 cut(s) 146, 320, 333, 449, 592, 647
BsaJI CCNNGG 1 cut(s) 370
BsaWI WCCGGW 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 6 cut(s) 179, 216, 223, 329, 396, 413
Bse118I RCCGGY 2 cut(s) 322, 621
Bse1I ACTGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 6 cut(s) 179, 216, 223, 329, 396, 413
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 4 cut(s) 145, 148, 199, 537
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 2 cut(s) 371, 450
BseYI CCCAGC 1 cut(s) 245
Bsh1236I CGCG 3 cut(s) 98, 224, 404
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 67, 306
BshNI GGYRCC 2 cut(s) 332, 591
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 2 cut(s) 51, 242
BsiHKCI CYCGRG 2 cut(s) 235, 433
BsiSI CCGG 5 cut(s) 180, 217, 323, 372, 622
BslFI GGGAC 2 cut(s) 331, 548
BslI CCNNNNNNNGG 6 cut(s) 179, 216, 223, 329, 396, 413
BsmFI GGGAC 2 cut(s) 331, 548
BsnI GGCC 2 cut(s) 67, 306
BsoBI CYCGRG 2 cut(s) 235, 433
Bsp1286I GDGCHC 3 cut(s) 51, 180, 242
Bsp143I GATC 2 cut(s) 59, 564
BspACI CCGC 9 cut(s) 5, 123, 224, 315, 382, 414, 547, 557, 589
BspANI GGCC 2 cut(s) 67, 306
BspFNI CGCG 3 cut(s) 98, 224, 404
BspLI GGNNCC 3 cut(s) 334, 376, 593
BspQI GCTCTTC 1 cut(s) 305
BspT107I GGYRCC 2 cut(s) 332, 591
BsrBI CCGCTC 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 322, 621
BsrI ACTGG 1 cut(s) 114
BssAI RCCGGY 2 cut(s) 322, 621
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 2 cut(s) 59, 564
BssNI GRCGYC 6 cut(s) 146, 320, 333, 449, 592, 647
Bst4CI ACNGT 4 cut(s) 40, 53, 262, 273
Bst6I CTCTTC 1 cut(s) 305
BstACI GRCGYC 6 cut(s) 146, 320, 333, 449, 592, 647
BstBAI YACGTR 1 cut(s) 410
BstC8I GCNNGC 4 cut(s) 331, 346, 549, 623
BstF5I GGATG 1 cut(s) 110
BstFNI CGCG 3 cut(s) 98, 224, 404
BstH2I RGCGCY 2 cut(s) 336, 595
BstHHI GCGC 4 cut(s) 335, 389, 406, 594
BstKTI GATC 2 cut(s) 62, 567
BstMBI GATC 2 cut(s) 59, 564
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 6 cut(s) 246, 312, 341, 381, 420, 557
BstSCI CCNGG 2 cut(s) 178, 370
BstSLI GKGCMC 1 cut(s) 180
BstUI CGCG 3 cut(s) 98, 224, 404
BstV1I GCAGC 2 cut(s) 371, 450
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BsuRI GGCC 2 cut(s) 67, 306
BtgZI GCGATG 1 cut(s) 509
BtsCI GGATG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 4 cut(s) 331, 346, 549, 623
CfoI GCGC 4 cut(s) 335, 389, 406, 594
Cfr10I RCCGGY 2 cut(s) 322, 621
CseI GACGC 6 cut(s) 87, 154, 328, 373, 438, 636
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 391
CviQI GTAC 1 cut(s) 457
DinI GGCGCC 2 cut(s) 334, 593
DpnI GATC 2 cut(s) 61, 566
DpnII GATC 2 cut(s) 59, 564
DraIII CACNNNGTG 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
EciI GGCGGA 1 cut(s) 112
Eco72I CACGTG 1 cut(s) 410
Eco88I CYCGRG 2 cut(s) 235, 433
EcoT22I ATGCAT 1 cut(s) 396
EgeI GGCGCC 2 cut(s) 334, 593
EheI GGCGCC 2 cut(s) 334, 593
FaeI CATG 1 cut(s) 394
FaiI YATR 3 cut(s) 90, 392, 396
FaqI GGGAC 2 cut(s) 331, 548
FatI CATG 1 cut(s) 390
FauI CCCGC 2 cut(s) 308, 540
FbaI TGATCA 1 cut(s) 564
FblI GTMKAC 2 cut(s) 104, 228
Fnu4HI GCNGC 5 cut(s) 385, 415, 439, 558, 590
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 5 cut(s) 385, 415, 439, 558, 590
FspBI CTAG 1 cut(s) 420
GlaI GCGC 4 cut(s) 334, 388, 405, 593
GluI GCNGC 5 cut(s) 385, 415, 439, 558, 590
GsaI CCCAGC 1 cut(s) 249
HaeII RGCGCY 2 cut(s) 336, 595
HaeIII GGCC 2 cut(s) 67, 306
HapII CCGG 5 cut(s) 180, 217, 323, 372, 622
HgaI GACGC 6 cut(s) 87, 154, 328, 373, 438, 636
HhaI GCGC 4 cut(s) 335, 389, 406, 594
Hin1I GRCGYC 6 cut(s) 146, 320, 333, 449, 592, 647
Hin1II CATG 1 cut(s) 394
Hin6I GCGC 4 cut(s) 333, 387, 404, 592
HinP1I GCGC 4 cut(s) 333, 387, 404, 592
HincII GTYRAC 2 cut(s) 105, 229
HindII GTYRAC 2 cut(s) 105, 229
HinfI GANTC 1 cut(s) 516
HpaII CCGG 5 cut(s) 180, 217, 323, 372, 622
HphI GGTGA 3 cut(s) 19, 523, 553
Hpy166II GTNNAC 2 cut(s) 105, 229
Hpy188I TCNGA 3 cut(s) 521, 564, 569
Hpy188III TCNNGA 4 cut(s) 142, 235, 265, 657
Hpy8I GTNNAC 2 cut(s) 105, 229
Hpy99I CGWCG 8 cut(s) 25, 103, 106, 367, 454, 457, 577, 652
HpyAV CCTTC 4 cut(s) 369, 388, 480, 524
HpyCH4III ACNGT 4 cut(s) 40, 53, 262, 273
HpyCH4IV ACGT 2 cut(s) 20, 409
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 6 cut(s) 246, 312, 341, 381, 420, 557
HpySE526I ACGT 2 cut(s) 20, 409
Hsp92I GRCGYC 6 cut(s) 146, 320, 333, 449, 592, 647
Hsp92II CATG 1 cut(s) 394
HspAI GCGC 4 cut(s) 333, 387, 404, 592
KasI GGCGCC 2 cut(s) 332, 591
KroI GCCGGC 1 cut(s) 621
KroNI GCCGGC 1 cut(s) 623
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 2 cut(s) 59, 564
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 3 cut(s) 46, 171, 380
Lsp1109I GCAGC 2 cut(s) 371, 450
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 20, 409
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 61, 566
MbiI CCGCTC 1 cut(s) 315
MboI GATC 2 cut(s) 59, 564
MboII GAAGA 3 cut(s) 6, 123, 322
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 3 cut(s) 51, 180, 242
MluCI AATT 1 cut(s) 137
Mly113I GGCGCC 2 cut(s) 333, 592
MmeI TCCRAC 1 cut(s) 631
Mph1103I ATGCAT 1 cut(s) 396
MroNI GCCGGC 1 cut(s) 621
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 1 cut(s) 425
MspA1I CMGCKG 2 cut(s) 384, 589
MspI CCGG 5 cut(s) 180, 217, 323, 372, 622
MspR9I CCNGG 2 cut(s) 180, 372
MvnI CGCG 3 cut(s) 98, 224, 404
MwoI GCNNNNNNNGC 6 cut(s) 246, 312, 341, 381, 420, 557
NaeI GCCGGC 1 cut(s) 623
NarI GGCGCC 2 cut(s) 333, 592
NciI CCSGG 2 cut(s) 180, 372
NdeII GATC 2 cut(s) 59, 564
NgoMIV GCCGGC 1 cut(s) 621
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 3 cut(s) 334, 376, 593
NmeAIII GCCGAG 2 cut(s) 43, 620
NsiI ATGCAT 1 cut(s) 396
PaeR7I CTCGAG 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 2 cut(s) 452, 461
PdiI GCCGGC 1 cut(s) 623
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 516
PkrI GCNGC 5 cut(s) 386, 416, 440, 559, 591
PluTI GGCGCC 2 cut(s) 336, 595
PmaCI CACGTG 1 cut(s) 410
PmlI CACGTG 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 410
PspCI CACGTG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 334, 376, 593
PspXI VCTCGAGB 1 cut(s) 433
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SalI GTCGAC 2 cut(s) 103, 227
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 425
SatI GCNGC 5 cut(s) 385, 415, 439, 558, 590
Sau3AI GATC 2 cut(s) 59, 564
ScrFI CCNGG 2 cut(s) 180, 372
SduI GDGCHC 3 cut(s) 51, 180, 242
SetI ASST 7 cut(s) 23, 110, 200, 234, 412, 425, 491
SfoI GGCGCC 2 cut(s) 334, 593
Sfr274I CTCGAG 1 cut(s) 433
SgrAI CRCCGGYG 1 cut(s) 322
SlaI CTCGAG 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 1 cut(s) 137
SsiI CCGC 9 cut(s) 5, 123, 224, 315, 382, 414, 547, 557, 589
SspDI GGCGCC 2 cut(s) 332, 591
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 178, 370
TaaI ACNGT 4 cut(s) 40, 53, 262, 273
TaiI ACGT 2 cut(s) 23, 412
TaqI TCGA 7 cut(s) 104, 228, 254, 362, 434, 464, 484
TaqII GACCGA 2 cut(s) 586, 631
TasI AATT 1 cut(s) 137
TauI GCSGC 3 cut(s) 417, 560, 592
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 1 cut(s) 56
TseI GCWGC 2 cut(s) 384, 438
TspDTI ATGAA 1 cut(s) 512
TspGWI ACGGA 2 cut(s) 202, 619
TspRI CASTG 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 433
XmiI GTMKAC 2 cut(s) 104, 228
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.