Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308813.1

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Reverse (-)

111 .. 767

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308813.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggcggtgatttcttcaacgtcgtcgaaagaaaaaacggtcttggagccctgttacagatctcggcctctcctacccctatcggctcatggcttcgcgtcgtcgacctcatccagtttctccgccacttcttcacaattcttgacgcgccccgcctcctccacgcgccaccccgtgcccggcaactccatttccacctcattgtcctcctccgtccggttcgtggccgaccttcctagcactcccagccgttcgatgacggtcaagaaaccgttcgcggacaacggcaagaaccaaagcaacggccagaagagcgggacgccggtggctggcaccaagaaagcgtgcctctgttccccttcgacgcacccaggctccttccgctgcgccatgcataggaacgcgccacgtggtggcgctagccaatcgaattcgagcagccaaacggcgtcgtcgtacaactcgaatatcaggctcaactatcgaaggtcggcgatgaataactcgttggtgagaatcggagtggaaggggacttggtgaagcgagctttggcggctctgatcagacccactgctcacaatcagcggcgccgagctgatttccaacccaagccgagccggctctctgtaatgtccaaaacggcgtcggattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.18

Weight (kDa)

11.37

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	332, 588
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccBSI	CCGCTC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	104
AccII	CGCG	5 cut(s)	98, 148, 166, 278, 404
AciI	CCGC	8 cut(s)	5, 123, 153, 278, 315, 382, 554, 586
AcoI	YGGCCR	2 cut(s)	225, 304
AcsI	RAATTY	1 cut(s)	430
AcvI	CACGTG	1 cut(s)	410
AcyI	GRCGYC	4 cut(s)	320, 449, 589, 644
AdeI	CACNNNGTG	2 cut(s)	175, 413
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	6 cut(s)	179, 216, 223, 329, 396, 413
AgsI	TTSAA	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	4 cut(s)	491, 523, 533, 565
AluBI	AGCT	2 cut(s)	548, 596
AluI	AGCT	2 cut(s)	548, 596
AoxI	GGCC	3 cut(s)	65, 225, 304
ApeKI	GCWGC	2 cut(s)	384, 438
ApoI	RAATTY	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	6 cut(s)	150, 168, 389, 406, 419, 591
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	3 cut(s)	19, 523, 550
AsuNHI	GCTAGC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	2 cut(s)	332, 588
BanII	GRGCYC	1 cut(s)	51
BbrPI	CACGTG	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	371, 450
BceAI	ACGGC	4 cut(s)	234, 301, 319, 462
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	180
BfaI	CTAG	2 cut(s)	237, 420
BfoI	RGCGCY	2 cut(s)	420, 592
BglI	GCCNNNNNGGC	1 cut(s)	619
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	4 cut(s)	385, 439, 555, 587
BlsI	GCNGC	4 cut(s)	386, 440, 556, 588
Bme1390I	CCNGG	2 cut(s)	180, 372
BmiI	GGNNCC	4 cut(s)	48, 334, 376, 590
BmrFI	CCNGG	2 cut(s)	180, 372
BmtI	GCTAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	410
BsaHI	GRCGYC	4 cut(s)	320, 449, 589, 644
BsaJI	CCNNGG	1 cut(s)	370
BsaWI	WCCGGW	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 216, 223, 329, 396, 413
Bse118I	RCCGGY	2 cut(s)	322, 618
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	6 cut(s)	179, 216, 223, 329, 396, 413
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	148, 199
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	371, 450
BseYI	CCCAGC	1 cut(s)	245
Bsh1236I	CGCG	5 cut(s)	98, 148, 166, 278, 404
BshFI	GGCC	3 cut(s)	67, 227, 306
BshNI	GGYRCC	2 cut(s)	332, 588
BsiSI	CCGG	4 cut(s)	180, 217, 323, 619
BslFI	GGGAC	2 cut(s)	331, 545
BslI	CCNNNNNNNGG	6 cut(s)	179, 216, 223, 329, 396, 413
BsmFI	GGGAC	2 cut(s)	331, 545
BsnI	GGCC	3 cut(s)	67, 227, 306
Bsp1286I	GDGCHC	2 cut(s)	51, 180
Bsp143I	GATC	2 cut(s)	59, 561
BspACI	CCGC	8 cut(s)	5, 123, 153, 278, 315, 382, 554, 586
BspANI	GGCC	3 cut(s)	67, 227, 306
BspFNI	CGCG	5 cut(s)	98, 148, 166, 278, 404
BspLI	GGNNCC	4 cut(s)	48, 334, 376, 590
BspOI	GCTAGC	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	305
BspT107I	GGYRCC	2 cut(s)	332, 588
BsrBI	CCGCTC	1 cut(s)	315
BsrFI	RCCGGY	2 cut(s)	322, 618
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	2 cut(s)	322, 618
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	59, 561
BssNI	GRCGYC	4 cut(s)	320, 449, 589, 644
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	40, 262, 273
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	4 cut(s)	320, 449, 589, 644
BstBAI	YACGTR	1 cut(s)	410
BstC8I	GCNNGC	5 cut(s)	331, 346, 421, 546, 620
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	5 cut(s)	98, 148, 166, 278, 404
BstH2I	RGCGCY	2 cut(s)	420, 592
BstHHI	GCGC	6 cut(s)	150, 168, 389, 406, 419, 591
BstKTI	GATC	2 cut(s)	62, 564
BstMBI	GATC	2 cut(s)	59, 561
BstMWI	GCNNNNNNNGC	5 cut(s)	246, 312, 381, 554, 619
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	178, 370
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	5 cut(s)	98, 148, 166, 278, 404
BstV1I	GCAGC	2 cut(s)	371, 450
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	67, 227, 306
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	5 cut(s)	331, 346, 421, 546, 620
CfoI	GCGC	6 cut(s)	150, 168, 389, 406, 419, 591
Cfr10I	RCCGGY	2 cut(s)	322, 618
CseI	GACGC	6 cut(s)	87, 154, 328, 373, 438, 633
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	2 cut(s)	89, 391
CviQI	GTAC	1 cut(s)	457
DinI	GGCGCC	1 cut(s)	590
DpnI	GATC	2 cut(s)	61, 563
DpnII	GATC	2 cut(s)	59, 561
DraIII	CACNNNGTG	2 cut(s)	175, 413
EaeI	YGGCCR	2 cut(s)	225, 304
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	51
EgeI	GGCGCC	1 cut(s)	590
EheI	GGCGCC	1 cut(s)	590
FaeI	CATG	2 cut(s)	92, 394
FaiI	YATR	3 cut(s)	90, 392, 396
FaqI	GGGAC	2 cut(s)	331, 545
FatI	CATG	2 cut(s)	88, 390
FauI	CCCGC	2 cut(s)	160, 308
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	4 cut(s)	385, 439, 555, 587
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	385, 439, 555, 587
FspBI	CTAG	2 cut(s)	237, 420
GlaI	GCGC	6 cut(s)	149, 167, 388, 405, 418, 590
GluI	GCNGC	4 cut(s)	385, 439, 555, 587
GsaI	CCCAGC	1 cut(s)	249
HaeII	RGCGCY	2 cut(s)	420, 592
HaeIII	GGCC	3 cut(s)	67, 227, 306
HapII	CCGG	4 cut(s)	180, 217, 323, 619
HgaI	GACGC	6 cut(s)	87, 154, 328, 373, 438, 633
HhaI	GCGC	6 cut(s)	150, 168, 389, 406, 419, 591
Hin1I	GRCGYC	4 cut(s)	320, 449, 589, 644
Hin1II	CATG	2 cut(s)	92, 394
Hin6I	GCGC	6 cut(s)	148, 166, 387, 404, 417, 589
HinP1I	GCGC	6 cut(s)	148, 166, 387, 404, 417, 589
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	516, 650
HpaII	CCGG	4 cut(s)	180, 217, 323, 619
HphI	GGTGA	3 cut(s)	19, 523, 550
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	4 cut(s)	521, 561, 566, 649
Hpy188III	TCNNGA	3 cut(s)	142, 265, 654
Hpy8I	GTNNAC	1 cut(s)	105
Hpy99I	CGWCG	8 cut(s)	25, 28, 103, 106, 367, 454, 457, 649
HpyAV	CCTTC	5 cut(s)	242, 369, 388, 480, 521
HpyCH4III	ACNGT	3 cut(s)	40, 262, 273
HpyCH4IV	ACGT	2 cut(s)	20, 409
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	5 cut(s)	246, 312, 381, 554, 619
HpySE526I	ACGT	2 cut(s)	20, 409
Hsp92I	GRCGYC	4 cut(s)	320, 449, 589, 644
Hsp92II	CATG	2 cut(s)	92, 394
HspAI	GCGC	6 cut(s)	148, 166, 387, 404, 417, 589
KasI	GGCGCC	1 cut(s)	588
KroI	GCCGGC	1 cut(s)	618
KroNI	GCCGGC	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	2 cut(s)	59, 561
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	2 cut(s)	46, 380
Lsp1109I	GCAGC	2 cut(s)	371, 450
MaeI	CTAG	2 cut(s)	237, 420
MaeII	ACGT	2 cut(s)	20, 409
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	61, 563
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	2 cut(s)	59, 561
MboII	GAAGA	3 cut(s)	6, 123, 322
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	2 cut(s)	51, 180
MluCI	AATT	2 cut(s)	137, 430
Mly113I	GGCGCC	1 cut(s)	589
MmeI	TCCRAC	2 cut(s)	627, 628
MnlI	CCTC	8 cut(s)	78, 118, 166, 169, 208, 217, 220, 359
Mph1103I	ATGCAT	1 cut(s)	396
MroNI	GCCGGC	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	384, 586
MspI	CCGG	4 cut(s)	180, 217, 323, 619
MspR9I	CCNGG	2 cut(s)	180, 372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	5 cut(s)	98, 148, 166, 278, 404
MwoI	GCNNNNNNNGC	5 cut(s)	246, 312, 381, 554, 619
NaeI	GCCGGC	1 cut(s)	620
NarI	GGCGCC	1 cut(s)	589
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	59, 561
NgoMIV	GCCGGC	1 cut(s)	618
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	2 cut(s)	92, 394
NlaIV	GGNNCC	4 cut(s)	48, 334, 376, 590
NmeAIII	GCCGAG	3 cut(s)	43, 617, 639
NsiI	ATGCAT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	2 cut(s)	452, 461
PdiI	GCCGGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	516, 650
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	386, 440, 556, 588
PluTI	GGCGCC	1 cut(s)	592
PmaCI	CACGTG	1 cut(s)	410
PmlI	CACGTG	1 cut(s)	410
Ppu21I	YACGTR	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	370
PspCI	CACGTG	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	4 cut(s)	48, 334, 376, 590
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	305
SatI	GCNGC	4 cut(s)	385, 439, 555, 587
Sau3AI	GATC	2 cut(s)	59, 561
ScrFI	CCNGG	2 cut(s)	180, 372
SduI	GDGCHC	2 cut(s)	51, 180
SetI	ASST	8 cut(s)	23, 110, 200, 234, 412, 491, 550, 598
SfoI	GGCGCC	1 cut(s)	590
SgrAI	CRCCGGYG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	137, 430
SsiI	CCGC	8 cut(s)	5, 123, 153, 278, 315, 382, 554, 586
SspDI	GGCGCC	1 cut(s)	588
SspMI	CTAG	2 cut(s)	237, 420
StyD4I	CCNGG	2 cut(s)	178, 370
TaaI	ACNGT	3 cut(s)	40, 262, 273
TaiI	ACGT	2 cut(s)	23, 412
TaqI	TCGA	8 cut(s)	26, 104, 254, 362, 428, 434, 464, 484
TasI	AATT	2 cut(s)	137, 430
TauI	GCSGC	2 cut(s)	557, 589
TfiI	GAWTC	2 cut(s)	516, 650
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	2 cut(s)	384, 438
TspDTI	ATGAA	1 cut(s)	512
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	577
Van91I	CCANNNNNTGG	1 cut(s)	413
XapI	RAATTY	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	2 cut(s)	237, 420
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.