Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009060.1

Orthogroup ID

OG0001520

Physical Location & Seq

Genomic Coordinates Reverse (-)

3642 .. 4205

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009060.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggcaacagcttctagaaggtcgtcagcaacgggatcggtcctccggtccaccgcctcaccctcactctccggaaggttctacacctcccattcctcctcctccaccggcttcgcctcctccacttccagcttctcctcccgatccgccggcggtttcttcacacgcgccgcctcccccccgcgcgtgagcctggccagaccctctccctcggctcagtccgtccggttctctctccacgaccgccctacctcccccagccgctccatatccgtctcgccgcacggctccgacagccaccaccggagcgcgatgaggaagcaggtcaaccctaagaggacctgtatgtgctcccctacttctcacccaggctccttccggtgcagcctacacaagaactgtggctcgcacgtgtcgagttcctcctctggcggcgtggagggcgatctcgtgaagcgcgccttagccgctctgatccgcccctcctcccacagccagcggcgccgcgccgatttccgtccccggcccagccggctctccaccatgtcgaagtgcagcgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

19.84

Weight (kDa)

11.89

Isoelectric Point (pI)

88.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001520)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11090 AT5G25280 AT5G25280 AT5G25280
fragaria_vesca	FvH4_1g01930 FvH4_6g29080 FvH4_6g29090
malus_domestica	MD00G1046800.v1.1 MD08G1152900.v1.1 MD13G1239000.v1.1 MD15G1129600.v1.1 MD15G1161800.v1.1 MD17G1218000.v1.1
prunus_persica	Prupe.1G485100_v2.0.a1 Prupe.1G485100_v2.0.a1 Prupe.3G093600_v2.0.a1 Prupe.7G256900_v2.0.a1 Prupe.7G256900_v2.0.a1
pyrus_communis	pycom02g01570 pycom08g13180 pycom15g11680 pycom15g14540 pycom17g22230
rosa_chinensis	RchiOBHm_Chr2g0086961 RchiOBHm_Chr2g0134271 RchiOBHm_Chr6g0297351
rosa_laevigata	RLG00000011609 RLG00000015818 RLG00000019383
rosa_multiflora	Rmu_co8148184.1_g000001 Rmu_co8308813.1_g000001 Rmu_sc0000418.1_g000003 Rmu_sc0004535.1_g000011 Rmu_sc0009060.1_g000002 Rmu_sc0030045.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110390 Rroxscaffold_7G00170620
rosa_rugosa	Rorug01G0065600 Rorug01G0471100 Rorug02G0315800 Rorug06G0270800
rosa_samantha	Rh2AG023700 Rh2AG368400 Rh2BG374400 Rh2CG352100 Rh2DG024400 Rh2DG391700 Rh6DG382300
rosa_wichuraiana	Rw2G001870 Rw2G030020 Rw6G033300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	501
AccBSI	CCGCTC	2 cut(s)	264, 470
AccII	CGCG	6 cut(s)	168, 184, 186, 311, 459, 507
AccIII	TCCGGA	1 cut(s)	71
AclWI	GGATC	3 cut(s)	43, 138, 469
AcoI	YGGCCR	1 cut(s)	195
AcvI	CACGTG	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	502
AflIII	ACRYGT	1 cut(s)	411
AjnI	CCWGG	2 cut(s)	192, 367
AluBI	AGCT	2 cut(s)	11, 132
AluI	AGCT	2 cut(s)	11, 132
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	3 cut(s)	43, 138, 469
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	2 cut(s)	195, 524
ApeKI	GCWGC	2 cut(s)	384, 555
AspLEI	GCGC	7 cut(s)	170, 186, 311, 459, 461, 504, 509
AspS9I	GGNCC	4 cut(s)	40, 48, 339, 525
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	51, 356
AvaII	GGWCC	3 cut(s)	40, 48, 339
BalI	TGGCCA	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	501
BauI	CACGAG	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	396
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	2 cut(s)	194, 369
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	505
BfuAI	ACCTGC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	532
BisI	GCNGC	9 cut(s)	171, 262, 281, 385, 433, 468, 500, 505, 556
BlsI	GCNGC	9 cut(s)	172, 263, 282, 386, 434, 469, 501, 506, 557
Bme1390I	CCNGG	3 cut(s)	194, 369, 523
Bme18I	GGWCC	3 cut(s)	40, 48, 339
BmgT120I	GGNCC	4 cut(s)	40, 48, 339, 525
BmiI	GGNNCC	3 cut(s)	289, 373, 503
BmrFI	CCNGG	3 cut(s)	194, 369, 523
Bpu10I	CCTNAGC	1 cut(s)	463
BpuMI	CCSGG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	502
BsaJI	CCNNGG	3 cut(s)	210, 367, 521
BsaWI	WCCGGW	5 cut(s)	45, 71, 225, 303, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bse118I	RCCGGY	3 cut(s)	107, 149, 531
BseAI	TCCGGA	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	194, 369
BseDI	CCNNGG	3 cut(s)	210, 367, 521
BseMII	CTCAG	1 cut(s)	230
BsePI	GCGCGC	1 cut(s)	457
BseRI	GAGGAG	6 cut(s)	88, 91, 109, 127, 415, 475
BseXI	GCAGC	1 cut(s)	396
BseYI	CCCAGC	2 cut(s)	257, 527
BsgI	GTGCAG	1 cut(s)	403
Bsh1236I	CGCG	6 cut(s)	168, 184, 186, 311, 459, 507
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	197, 526
BshNI	GGYRCC	1 cut(s)	501
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	9 cut(s)	46, 72, 108, 150, 226, 304, 379, 523, 532
BslFI	GGGAC	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	280
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	2 cut(s)	197, 526
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	35, 143, 445, 474
BspANI	GGCC	2 cut(s)	197, 526
BspCNI	CTCAG	1 cut(s)	229
BspEI	TCCGGA	1 cut(s)	71
BspFNI	CGCG	6 cut(s)	168, 184, 186, 311, 459, 507
BspLI	GGNNCC	3 cut(s)	289, 373, 503
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	3 cut(s)	43, 138, 469
BspT107I	GGYRCC	1 cut(s)	501
BsrBI	CCGCTC	2 cut(s)	264, 470
BsrFI	RCCGGY	3 cut(s)	107, 149, 531
BssAI	RCCGGY	3 cut(s)	107, 149, 531
BssECI	CCNNGG	3 cut(s)	210, 367, 521
BssHII	GCGCGC	1 cut(s)	457
BssMI	GATC	4 cut(s)	35, 143, 445, 474
BssNI	GRCGYC	1 cut(s)	502
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	2 cut(s)	194, 369
Bst4CI	ACNGT	1 cut(s)	401
BstACI	GRCGYC	1 cut(s)	502
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	5 cut(s)	151, 407, 459, 497, 533
BstDEI	CTNAG	3 cut(s)	216, 333, 463
BstFNI	CGCG	6 cut(s)	168, 184, 186, 311, 459, 507
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	7 cut(s)	170, 186, 311, 459, 461, 504, 509
BstKTI	GATC	4 cut(s)	38, 146, 448, 477
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	4 cut(s)	35, 143, 445, 474
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	5 cut(s)	294, 441, 467, 501, 532
BstNI	CCWGG	2 cut(s)	194, 369
BstSCI	CCNGG	3 cut(s)	192, 367, 521
BstUI	CGCG	6 cut(s)	168, 184, 186, 311, 459, 507
BstV1I	GCAGC	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	197, 526
BtgZI	GCGATG	1 cut(s)	326
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	5 cut(s)	151, 407, 459, 497, 533
CfoI	GCGC	7 cut(s)	170, 186, 311, 459, 461, 504, 509
Cfr10I	RCCGGY	3 cut(s)	107, 149, 531
Cfr13I	GGNCC	4 cut(s)	40, 48, 339, 525
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	1 cut(s)	544
DdeI	CTNAG	3 cut(s)	216, 333, 463
DinI	GGCGCC	1 cut(s)	503
DpnI	GATC	4 cut(s)	37, 145, 447, 476
DpnII	GATC	4 cut(s)	35, 143, 445, 474
EaeI	YGGCCR	1 cut(s)	195
EciI	GGCGGA	2 cut(s)	136, 467
Eco47I	GGWCC	3 cut(s)	40, 48, 339
Eco72I	CACGTG	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	192, 367
EgeI	GGCGCC	1 cut(s)	503
EheI	GGCGCC	1 cut(s)	503
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	1 cut(s)	547
FaiI	YATR	3 cut(s)	269, 347, 545
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	543
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	9 cut(s)	171, 262, 281, 385, 433, 468, 500, 505, 556
Fsp4HI	GCNGC	9 cut(s)	171, 262, 281, 385, 433, 468, 500, 505, 556
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	7 cut(s)	169, 185, 310, 458, 460, 503, 508
GluI	GCNGC	9 cut(s)	171, 262, 281, 385, 433, 468, 500, 505, 556
GsaI	CCCAGC	2 cut(s)	261, 531
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	2 cut(s)	197, 526
HapII	CCGG	9 cut(s)	46, 72, 108, 150, 226, 304, 379, 523, 532
HhaI	GCGC	7 cut(s)	170, 186, 311, 459, 461, 504, 509
Hin1I	GRCGYC	1 cut(s)	502
Hin1II	CATG	1 cut(s)	547
Hin6I	GCGC	7 cut(s)	168, 184, 309, 457, 459, 502, 507
HinP1I	GCGC	7 cut(s)	168, 184, 309, 457, 459, 502, 507
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HpaII	CCGG	9 cut(s)	46, 72, 108, 150, 226, 304, 379, 523, 532
HphI	GGTGA	2 cut(s)	51, 356
Hpy166II	GTNNAC	2 cut(s)	51, 328
Hpy188I	TCNGA	2 cut(s)	292, 474
Hpy188III	TCNNGA	4 cut(s)	15, 72, 141, 451
Hpy8I	GTNNAC	2 cut(s)	51, 328
HpyAV	CCTTC	3 cut(s)	12, 69, 385
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	2 cut(s)	384, 555
HpyF10VI	GCNNNNNNNGC	5 cut(s)	294, 441, 467, 501, 532
HpyF3I	CTNAG	3 cut(s)	216, 333, 463
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	502
Hsp92II	CATG	1 cut(s)	547
HspAI	GCGC	7 cut(s)	168, 184, 309, 457, 459, 502, 507
KasI	GGCGCC	1 cut(s)	501
Kpn2I	TCCGGA	1 cut(s)	71
KroI	GCCGGC	2 cut(s)	149, 531
KroNI	GCCGGC	2 cut(s)	151, 533
Kzo9I	GATC	4 cut(s)	35, 143, 445, 474
LmnI	GCTCC	5 cut(s)	269, 293, 306, 356, 377
Lsp1109I	GCAGC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	411
MalI	GATC	4 cut(s)	37, 145, 447, 476
MbiI	CCGCTC	2 cut(s)	264, 470
MboI	GATC	4 cut(s)	35, 143, 445, 474
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	197
MluNI	TGGCCA	1 cut(s)	197
Mly113I	GGCGCC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	315
Mox20I	TGGCCA	1 cut(s)	197
MreI	CGCCGGCG	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	71
MroNI	GCCGGC	2 cut(s)	149, 531
MscI	TGGCCA	1 cut(s)	197
Msp20I	TGGCCA	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	9 cut(s)	46, 72, 108, 150, 226, 304, 379, 523, 532
MspR9I	CCNGG	3 cut(s)	194, 369, 523
MteI	GCGCNGCGC	1 cut(s)	505
MvaI	CCWGG	2 cut(s)	194, 369
MvnI	CGCG	6 cut(s)	168, 184, 186, 311, 459, 507
MwoI	GCNNNNNNNGC	5 cut(s)	294, 441, 467, 501, 532
NaeI	GCCGGC	2 cut(s)	151, 533
NarI	GGCGCC	1 cut(s)	502
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	4 cut(s)	35, 143, 445, 474
NgoMIV	GCCGGC	2 cut(s)	149, 531
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	3 cut(s)	289, 373, 503
NmeAIII	GCCGAG	1 cut(s)	191
PauI	GCGCGC	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PdiI	GCCGGC	2 cut(s)	151, 533
PkrI	GCNGC	9 cut(s)	172, 263, 282, 386, 434, 469, 501, 506, 557
PluTI	GGCGCC	1 cut(s)	505
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	192, 367
PspCI	CACGTG	1 cut(s)	412
PspFI	CCCAGC	2 cut(s)	257, 527
PspGI	CCWGG	2 cut(s)	192, 367
PspN4I	GGNNCC	3 cut(s)	289, 373, 503
PspPI	GGNCC	4 cut(s)	40, 48, 339, 525
PspPPI	RGGWCCY	1 cut(s)	339
PteI	GCGCGC	1 cut(s)	457
SatI	GCNGC	9 cut(s)	171, 262, 281, 385, 433, 468, 500, 505, 556
Sau3AI	GATC	4 cut(s)	35, 143, 445, 474
Sau96I	GGNCC	4 cut(s)	40, 48, 339, 525
ScrFI	CCNGG	3 cut(s)	194, 369, 523
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	9 cut(s)	13, 23, 80, 89, 134, 254, 327, 344, 414
SfoI	GGCGCC	1 cut(s)	503
SgrAI	CRCCGGYG	1 cut(s)	149
SinI	GGWCC	3 cut(s)	40, 48, 339
SspDI	GGCGCC	1 cut(s)	501
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	192, 367, 521
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	2 cut(s)	416, 548
TaqII	GACCGA	1 cut(s)	28
TauI	GCSGC	7 cut(s)	173, 264, 283, 435, 470, 502, 507
TseI	GCWGC	2 cut(s)	384, 555
TspGWI	ACGGA	3 cut(s)	211, 262, 506
VpaK11BI	GGWCC	3 cut(s)	40, 48, 339
XbaI	TCTAGA	1 cut(s)	14
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.