pycom08g13180

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0001520
Physical Location & Seq
Reverse (-)
11797610 .. 11798293
684 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g13180.1

Sequence Viewer

Length: 684 bp
ATGGCGACCGCATCTTCCTCATCGAGGGCGAGAATCCGGGCCAACAAAAGCGGCCCTGTGCTCCGGTCGCTCTCGCCTTCCGAAAGGTTCTACACCGCTTCTAATGGAGGTATCTCGTCGTCGGCGTCAGGTTTCGCTTCTTCGACGAGCTCAAGCTTCTCGTCGCCGGCGTCAGCTTTCTTCCACCACCACCACCAGGACCACCACTACTACAATCAGCAGATCAACCACCACCACCATCACAGATCCGCTTCTCCGACGCGTGTCAACCTATACACCTCCTCCTCTCCGTCTCCGTCCGTCCGGTTCTCCATCGACCACCGTTCGATCTCTCCCAACCACCATTCGAATCGATCCATCGCCGTCTCCAAGAAAACTGGACCGATTTCGATGCCGAAGAAGACCTGTATGTGCTCGCCGACGTCGCATCCGGGATCATTTCGCTGCAGCCTCCACAAGAACCAGGGAGGGAGTCAAAACACCGGATCTTTCCCGTCGAACAGGTTGAATATGCGCAGGTCTGCTATGACGAACTCGCTGGTACGAATCAGTGGAGTCGAAGGCGAGTGGGTGAAGCGAGCCTTGACCGCCCTGATTCGCCCTTGTGCGCACCAGCAGAGGCGGAGAGCCGGGTTCCAGCCACGGCCCAGCAGACTCTCTGCCATGTCCACCGCCCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.9

Weight (kDa)

11.69

Isoelectric Point (pI)

74.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 425
Acc16I TGCGCA 2 cut(s) 515, 609
Acc36I ACCTGC 1 cut(s) 507
AccII CGCG 1 cut(s) 262
AciI CCGC 7 cut(s) 9, 51, 96, 249, 588, 622, 672
AclWI GGATC 4 cut(s) 240, 348, 442, 493
AcyI GRCGYC 3 cut(s) 125, 170, 422
AfaI GTAC 1 cut(s) 543
AfiI CCNNNNNNNGG 2 cut(s) 24, 196
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 1 cut(s) 508
AjnI CCWGG 2 cut(s) 195, 462
AluBI AGCT 3 cut(s) 150, 156, 176
AluI AGCT 3 cut(s) 150, 156, 176
Alw21I GWGCWC 3 cut(s) 63, 152, 416
Alw26I GTCTC 2 cut(s) 297, 370
AlwI GGATC 4 cut(s) 240, 348, 442, 493
AoxI GGCC 3 cut(s) 39, 52, 644
ApeKI GCWGC 2 cut(s) 444, 447
AspLEI GCGC 2 cut(s) 516, 610
AspS9I GGNCC 5 cut(s) 39, 53, 199, 380, 645
AsuC2I CCSGG 3 cut(s) 38, 432, 631
AsuHPI GGTGA 1 cut(s) 583
AsuII TTCGAA 1 cut(s) 347
AvaII GGWCC 2 cut(s) 199, 380
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 3 cut(s) 63, 152, 416
BbvI GCAGC 2 cut(s) 431, 459
BccI CCATC 3 cut(s) 246, 320, 365
BceAI ACGGC 2 cut(s) 347, 659
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciT130I CCWGG 2 cut(s) 197, 464
BcnI CCSGG 3 cut(s) 38, 432, 631
BcoDI GTCTC 2 cut(s) 297, 370
BfaI CTAG 1 cut(s) 682
BfmI CTRYAG 1 cut(s) 445
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 3 cut(s) 52, 445, 448
BlsI GCNGC 3 cut(s) 53, 446, 449
Bme1390I CCNGG 5 cut(s) 38, 197, 432, 464, 631
Bme18I GGWCC 2 cut(s) 199, 380
BmgT120I GGNCC 5 cut(s) 39, 53, 199, 380, 645
BmiI GGNNCC 1 cut(s) 635
BmrFI CCNGG 5 cut(s) 38, 197, 432, 464, 631
BmsI GCATC 3 cut(s) 20, 381, 436
BoxI GACNNNNGTC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 3 cut(s) 38, 432, 631
Bsa29I ATCGAT 1 cut(s) 352
BsaHI GRCGYC 3 cut(s) 125, 170, 422
BsaJI CCNNGG 2 cut(s) 463, 641
BsaWI WCCGGW 3 cut(s) 63, 303, 482
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 196
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 382
BseBI CCWGG 2 cut(s) 197, 464
BseCI ATCGAT 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 463, 641
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 24, 196
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 2 cut(s) 271, 274
BseXI GCAGC 2 cut(s) 431, 459
BseYI CCCAGC 1 cut(s) 647
Bsh1236I CGCG 1 cut(s) 262
Bsh1285I CGRYCG 2 cut(s) 9, 68
BshFI GGCC 3 cut(s) 41, 54, 646
BshVI ATCGAT 1 cut(s) 352
BsiEI CGRYCG 2 cut(s) 9, 68
BsiHKAI GWGCWC 3 cut(s) 63, 152, 416
BsiSI CCGG 7 cut(s) 37, 64, 167, 304, 431, 483, 630
BslI CCNNNNNNNGG 2 cut(s) 24, 196
BsmAI GTCTC 2 cut(s) 297, 370
BsmBI CGTCTC 2 cut(s) 297, 370
BsnI GGCC 3 cut(s) 41, 54, 646
Bsp119I TTCGAA 1 cut(s) 347
Bsp1286I GDGCHC 3 cut(s) 63, 152, 416
Bsp143I GATC 6 cut(s) 222, 245, 327, 353, 434, 485
BspACI CCGC 7 cut(s) 9, 51, 96, 249, 588, 622, 672
BspANI GGCC 3 cut(s) 41, 54, 646
BspDI ATCGAT 1 cut(s) 352
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 635
BspMAI CTGCAG 1 cut(s) 449
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 4 cut(s) 240, 348, 442, 493
BspT104I TTCGAA 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 463, 641
BssMI GATC 6 cut(s) 222, 245, 327, 353, 434, 485
BssNI GRCGYC 3 cut(s) 125, 170, 422
Bst2UI CCWGG 2 cut(s) 197, 464
Bst4CI ACNGT 1 cut(s) 323
BstACI GRCGYC 3 cut(s) 125, 170, 422
BstBI TTCGAA 1 cut(s) 347
BstC8I GCNNGC 3 cut(s) 168, 416, 579
BstDSI CCRYGG 1 cut(s) 641
BstENI CCTNNNNNAGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 2 cut(s) 516, 610
BstKTI GATC 6 cut(s) 225, 248, 330, 356, 437, 488
BstMAI GTCTC 2 cut(s) 297, 370
BstMBI GATC 6 cut(s) 222, 245, 327, 353, 434, 485
BstMCI CGRYCG 2 cut(s) 9, 68
BstMWI GCNNNNNNNGC 3 cut(s) 67, 424, 587
BstNI CCWGG 2 cut(s) 197, 464
BstPAI GACNNNNGTC 1 cut(s) 263
BstSCI CCNGG 5 cut(s) 36, 195, 430, 462, 629
BstSFI CTRYAG 1 cut(s) 445
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 431, 459
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 2 cut(s) 245, 485
BstYI RGATCY 2 cut(s) 245, 485
Bsu15I ATCGAT 1 cut(s) 352
BsuRI GGCC 3 cut(s) 41, 54, 646
BsuTUI ATCGAT 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 641
BtgZI GCGATG 1 cut(s) 343
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 556
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 168, 416, 579
CfoI GCGC 2 cut(s) 516, 610
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 5 cut(s) 39, 53, 199, 380, 645
ClaI ATCGAT 1 cut(s) 352
CseI GACGC 3 cut(s) 114, 159, 268
Csp6I GTAC 1 cut(s) 542
CviAII CATG 1 cut(s) 664
CviQI GTAC 1 cut(s) 542
DpnI GATC 6 cut(s) 224, 247, 329, 355, 436, 487
DpnII GATC 6 cut(s) 222, 245, 327, 353, 434, 485
EciI GGCGGA 1 cut(s) 637
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 152
Eco47I GGWCC 2 cut(s) 199, 380
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 195, 462
EcoT38I GRGCYC 1 cut(s) 152
Esp3I CGTCTC 2 cut(s) 297, 370
FaeI CATG 1 cut(s) 667
FaiI YATR 5 cut(s) 274, 410, 512, 527, 665
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FatI CATG 1 cut(s) 663
Fnu4HI GCNGC 3 cut(s) 52, 445, 448
FokI GGATG 1 cut(s) 414
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 52, 445, 448
FspAI RTGCGCAY 1 cut(s) 609
FspBI CTAG 1 cut(s) 682
FspI TGCGCA 2 cut(s) 515, 609
GlaI GCGC 2 cut(s) 515, 609
GluI GCNGC 3 cut(s) 52, 445, 448
GsaI CCCAGC 1 cut(s) 651
HaeIII GGCC 3 cut(s) 41, 54, 646
HapII CCGG 7 cut(s) 37, 64, 167, 304, 431, 483, 630
HgaI GACGC 3 cut(s) 114, 159, 268
HhaI GCGC 2 cut(s) 516, 610
Hin1I GRCGYC 3 cut(s) 125, 170, 422
Hin1II CATG 1 cut(s) 667
Hin6I GCGC 2 cut(s) 514, 608
HinP1I GCGC 2 cut(s) 514, 608
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 7 cut(s) 33, 349, 472, 546, 555, 595, 654
HpaII CCGG 7 cut(s) 37, 64, 167, 304, 431, 483, 630
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 268, 669
Hpy188I TCNGA 2 cut(s) 82, 258
Hpy8I GTNNAC 2 cut(s) 268, 669
Hpy99I CGWCG 8 cut(s) 121, 124, 148, 166, 262, 424, 427, 499
HpyAV CCTTC 2 cut(s) 87, 554
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 1 cut(s) 447
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 424, 587
HpySE526I ACGT 1 cut(s) 422
Hsp92I GRCGYC 3 cut(s) 125, 170, 422
Hsp92II CATG 1 cut(s) 667
HspAI GCGC 2 cut(s) 514, 608
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Kzo9I GATC 6 cut(s) 222, 245, 327, 353, 434, 485
LmnI GCTCC 1 cut(s) 66
Lsp1109I GCAGC 2 cut(s) 431, 459
LweI GCATC 3 cut(s) 20, 381, 436
MaeI CTAG 1 cut(s) 682
MaeII ACGT 1 cut(s) 422
MalI GATC 6 cut(s) 224, 247, 329, 355, 436, 487
MboI GATC 6 cut(s) 222, 245, 327, 353, 434, 485
MboII GAAGA 5 cut(s) 6, 132, 172, 409, 412
MflI RGATCY 2 cut(s) 245, 485
MhlI GDGCHC 3 cut(s) 63, 152, 416
MluI ACGCGT 1 cut(s) 260
MlyI GAGTC 3 cut(s) 481, 564, 648
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 9 cut(s) 18, 28, 101, 289, 292, 295, 461, 461, 612
MreI CGCCGGCG 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 166
MspI CCGG 7 cut(s) 37, 64, 167, 304, 431, 483, 630
MspR9I CCNGG 5 cut(s) 38, 197, 432, 464, 631
MvaI CCWGG 2 cut(s) 197, 464
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 3 cut(s) 67, 424, 587
NaeI GCCGGC 1 cut(s) 168
NciI CCSGG 3 cut(s) 38, 432, 631
NdeII GATC 6 cut(s) 222, 245, 327, 353, 434, 485
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 1 cut(s) 635
NsbI TGCGCA 2 cut(s) 515, 609
NspV TTCGAA 1 cut(s) 347
PcsI WCGNNNNNNNCGW 2 cut(s) 122, 167
PdiI GCCGGC 1 cut(s) 168
PfeI GAWTC 4 cut(s) 33, 349, 546, 595
PfoI TCCNGGA 1 cut(s) 430
PkrI GCNGC 3 cut(s) 53, 446, 449
PleI GAGTC 3 cut(s) 480, 563, 648
PpsI GAGTC 3 cut(s) 480, 563, 648
PshAI GACNNNNGTC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 195, 462
PspFI CCCAGC 1 cut(s) 647
PspGI CCWGG 2 cut(s) 195, 462
PspN4I GGNNCC 1 cut(s) 635
PspPI GGNCC 5 cut(s) 39, 53, 199, 380, 645
PstI CTGCAG 1 cut(s) 449
PsuI RGATCY 2 cut(s) 245, 485
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
SacI GAGCTC 1 cut(s) 152
SatI GCNGC 3 cut(s) 52, 445, 448
Sau3AI GATC 6 cut(s) 222, 245, 327, 353, 434, 485
Sau96I GGNCC 5 cut(s) 39, 53, 199, 380, 645
SchI GAGTC 3 cut(s) 481, 564, 648
ScrFI CCNGG 5 cut(s) 38, 197, 432, 464, 631
SduI GDGCHC 3 cut(s) 63, 152, 416
SfaNI GCATC 3 cut(s) 20, 381, 436
SfcI CTRYAG 1 cut(s) 445
SfuI TTCGAA 1 cut(s) 347
SgrAI CRCCGGYG 1 cut(s) 166
SinI GGWCC 2 cut(s) 199, 380
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SsiI CCGC 7 cut(s) 9, 51, 96, 249, 588, 622, 672
SspMI CTAG 1 cut(s) 682
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 5 cut(s) 36, 195, 430, 462, 629
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 1 cut(s) 425
TaqI TCGA 9 cut(s) 23, 143, 315, 326, 347, 352, 389, 497, 558
TaqII GACCGA 1 cut(s) 397
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 4 cut(s) 33, 349, 546, 595
TscAI CASTG 1 cut(s) 556
TseI GCWGC 2 cut(s) 444, 447
TspGWI ACGGA 3 cut(s) 279, 285, 289
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 2 cut(s) 199, 380
XagI CCTNNNNNAGG 1 cut(s) 22
XspI CTAG 1 cut(s) 682
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.