RchiOBHm_Chr2g0086961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001520
Physical Location & Seq
Forward (+)
1913149 .. 1914838
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46244

Sequence Viewer

Length: 657 bp
ATGGCAACAGCTTCTAGAAGGTCGTCAGCAACTGGATCGGTCCTCCGGTCCAGTGCCTCACCCTCACTCTCCGGAAGGTTCTACACCTCCCATTCCTCCTCCTCCACCGGCTTCGCCTCCTCCACTTCCAGCTTCTCCTCCCGATCCGCCGGCGGTTTCTTCACACGCGCCGCCTCTCCCCCGCGCGTGAGCCTCGCCAGACCCTCTCCCTCGGCTCAGTCCGTCCGTTTCTCTCTCCACGACCGCCCTACCTCCCCCAGCCGCTCCATCTCCGTCTCGCCGCAAGGCTCCGGCAGCCACCACCGGAGCGCGATGAAGAAGCAGGTCAACCCTAAGAGGACCTGTATGTGCTCCCCTACTTCTCACCCAGGCTCCTTCCGGTGTAGCCTACACAAGAACTGTGGCTCGCACGTGTCGAGTTCCTCCTCTCCGCCGTACTCGCAGAACCGCCTCAACGCGCGTAGATCGGCGATGACGAACTCGCTGGTCAGGATCGGCGGCGTTGAAGGCGATCTCGTGAAGCGCGCCTTGGCCGCTCTGATCCGCCCCTCCTCCCACAGCCAGCGGCGCCGTGCCGATTTCCGTCCCCGGCCCAGCCGGCTCTCCACCATGTCAAAGTGCAGCCGCACGTGGCAGAATCCGGCGCTAGTGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

23.31

Weight (kDa)

12.0

Isoelectric Point (pI)

86.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 567
AccBSI CCGCTC 2 cut(s) 264, 536
AccII CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
AccIII TCCGGA 1 cut(s) 71
AclWI GGATC 4 cut(s) 43, 138, 500, 535
AcoI YGGCCR 1 cut(s) 531
AcvI CACGTG 2 cut(s) 412, 630
AcyI GRCGYC 1 cut(s) 568
AfaI GTAC 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 1 cut(s) 506
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 2 cut(s) 11, 132
AluI AGCT 2 cut(s) 11, 132
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 4 cut(s) 43, 138, 500, 535
AlwNI CAGNNNCTG 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 71
AoxI GGCC 2 cut(s) 531, 590
ApeKI GCWGC 2 cut(s) 294, 621
AspLEI GCGC 8 cut(s) 170, 186, 311, 460, 525, 527, 570, 646
AspS9I GGNCC 4 cut(s) 40, 48, 339, 591
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 2 cut(s) 51, 356
AvaII GGWCC 3 cut(s) 40, 48, 339
BanI GGYRCC 1 cut(s) 567
BauI CACGAG 1 cut(s) 515
BbrPI CACGTG 2 cut(s) 412, 630
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 306, 633
BccI CCATC 1 cut(s) 275
BceAI ACGGC 2 cut(s) 418, 555
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 15, 647
BfoI RGCGCY 2 cut(s) 571, 647
BfuAI ACCTGC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 598
BisI GCNGC 9 cut(s) 171, 262, 281, 295, 499, 534, 566, 622, 625
BlsI GCNGC 9 cut(s) 172, 263, 282, 296, 500, 535, 567, 623, 626
Bme1390I CCNGG 2 cut(s) 369, 589
Bme18I GGWCC 3 cut(s) 40, 48, 339
BmgT120I GGNCC 4 cut(s) 40, 48, 339, 591
BmiI GGNNCC 3 cut(s) 289, 373, 569
BmrFI CCNGG 2 cut(s) 369, 589
BpuMI CCSGG 1 cut(s) 589
BsaAI YACGTR 2 cut(s) 412, 630
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 4 cut(s) 210, 367, 528, 587
BsaWI WCCGGW 4 cut(s) 45, 71, 303, 378
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bse118I RCCGGY 3 cut(s) 107, 149, 597
Bse1I ACTGG 2 cut(s) 37, 51
BseAI TCCGGA 1 cut(s) 71
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 4 cut(s) 210, 367, 528, 587
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 37, 51
BsePI GCGCGC 1 cut(s) 523
BseRI GAGGAG 6 cut(s) 88, 91, 109, 127, 415, 541
BseXI GCAGC 2 cut(s) 306, 633
BseYI CCCAGC 2 cut(s) 257, 593
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 533, 592
BshNI GGYRCC 1 cut(s) 567
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 353
BslFI GGGAC 1 cut(s) 570
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 2 cut(s) 533, 592
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 71
Bsp143I GATC 7 cut(s) 35, 143, 464, 492, 511, 540, 651
BspANI GGCC 2 cut(s) 533, 592
BspCNI CTCAG 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 71
BspFNI CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
BspLI GGNNCC 3 cut(s) 289, 373, 569
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 4 cut(s) 43, 138, 500, 535
BspT107I GGYRCC 1 cut(s) 567
BsrBI CCGCTC 2 cut(s) 264, 536
BsrFI RCCGGY 3 cut(s) 107, 149, 597
BsrI ACTGG 2 cut(s) 37, 51
BssAI RCCGGY 3 cut(s) 107, 149, 597
BssECI CCNNGG 4 cut(s) 210, 367, 528, 587
BssHII GCGCGC 1 cut(s) 523
BssMI GATC 7 cut(s) 35, 143, 464, 492, 511, 540, 651
BssNI GRCGYC 1 cut(s) 568
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 401
BstACI GRCGYC 1 cut(s) 568
BstBAI YACGTR 2 cut(s) 412, 630
BstC8I GCNNGC 5 cut(s) 151, 407, 525, 563, 599
BstDEI CTNAG 2 cut(s) 216, 333
BstFNI CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
BstH2I RGCGCY 2 cut(s) 571, 647
BstHHI GCGC 8 cut(s) 170, 186, 311, 460, 525, 527, 570, 646
BstKTI GATC 7 cut(s) 38, 146, 467, 495, 514, 543, 654
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 7 cut(s) 35, 143, 464, 492, 511, 540, 651
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 2 cut(s) 367, 587
BstUI CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
BstV1I GCAGC 2 cut(s) 306, 633
BsuRI GGCC 2 cut(s) 533, 592
BtgZI GCGATG 2 cut(s) 326, 485
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 5 cut(s) 151, 407, 525, 563, 599
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 8 cut(s) 170, 186, 311, 460, 525, 527, 570, 646
Cfr10I RCCGGY 3 cut(s) 107, 149, 597
Cfr13I GGNCC 4 cut(s) 40, 48, 339, 591
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 1 cut(s) 610
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 2 cut(s) 216, 333
DinI GGCGCC 1 cut(s) 569
DpnI GATC 7 cut(s) 37, 145, 466, 494, 513, 542, 653
DpnII GATC 7 cut(s) 35, 143, 464, 492, 511, 540, 651
EaeI YGGCCR 1 cut(s) 531
EciI GGCGGA 3 cut(s) 136, 420, 533
Eco130I CCWWGG 1 cut(s) 528
Eco47I GGWCC 3 cut(s) 40, 48, 339
Eco72I CACGTG 2 cut(s) 412, 630
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 528
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 528
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 613
FaiI YATR 2 cut(s) 347, 611
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 1 cut(s) 570
FatI CATG 1 cut(s) 609
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 9 cut(s) 171, 262, 281, 295, 499, 534, 566, 622, 625
Fsp4HI GCNGC 9 cut(s) 171, 262, 281, 295, 499, 534, 566, 622, 625
FspBI CTAG 2 cut(s) 15, 647
GlaI GCGC 8 cut(s) 169, 185, 310, 459, 524, 526, 569, 645
GluI GCNGC 9 cut(s) 171, 262, 281, 295, 499, 534, 566, 622, 625
GsaI CCCAGC 2 cut(s) 261, 597
HaeII RGCGCY 2 cut(s) 571, 647
HaeIII GGCC 2 cut(s) 533, 592
HhaI GCGC 8 cut(s) 170, 186, 311, 460, 525, 527, 570, 646
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 1 cut(s) 613
Hin6I GCGC 8 cut(s) 168, 184, 309, 458, 523, 525, 568, 644
HinP1I GCGC 8 cut(s) 168, 184, 309, 458, 523, 525, 568, 644
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 637
HphI GGTGA 2 cut(s) 51, 356
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 540, 656
Hpy188III TCNNGA 5 cut(s) 15, 72, 141, 490, 517
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 4 cut(s) 12, 69, 385, 500
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 2 cut(s) 411, 629
HpyCH4V TGCA 1 cut(s) 621
HpyF10VI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
HpyF3I CTNAG 2 cut(s) 216, 333
HpySE526I ACGT 2 cut(s) 411, 629
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 1 cut(s) 613
HspAI GCGC 8 cut(s) 168, 184, 309, 458, 523, 525, 568, 644
KasI GGCGCC 1 cut(s) 567
Kpn2I TCCGGA 1 cut(s) 71
KroI GCCGGC 2 cut(s) 149, 597
KroNI GCCGGC 2 cut(s) 151, 599
Kzo9I GATC 7 cut(s) 35, 143, 464, 492, 511, 540, 651
LmnI GCTCC 5 cut(s) 269, 293, 306, 356, 377
Lsp1109I GCAGC 2 cut(s) 306, 633
MaeI CTAG 2 cut(s) 15, 647
MaeII ACGT 2 cut(s) 411, 629
MalI GATC 7 cut(s) 37, 145, 466, 494, 513, 542, 653
MbiI CCGCTC 2 cut(s) 264, 536
MboI GATC 7 cut(s) 35, 143, 464, 492, 511, 540, 651
MboII GAAGA 2 cut(s) 151, 328
MhlI GDGCHC 1 cut(s) 353
Mly113I GGCGCC 1 cut(s) 568
MreI CGCCGGCG 1 cut(s) 149
MroI TCCGGA 1 cut(s) 71
MroNI GCCGGC 2 cut(s) 149, 597
MspA1I CMGCKG 1 cut(s) 565
MspR9I CCNGG 2 cut(s) 369, 589
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 7 cut(s) 168, 184, 186, 311, 458, 460, 525
MwoI GCNNNNNNNGC 6 cut(s) 294, 439, 507, 533, 567, 598
NaeI GCCGGC 2 cut(s) 151, 599
NarI GGCGCC 1 cut(s) 568
NciI CCSGG 1 cut(s) 589
NdeII GATC 7 cut(s) 35, 143, 464, 492, 511, 540, 651
NgoMIV GCCGGC 2 cut(s) 149, 597
NlaIII CATG 1 cut(s) 613
NlaIV GGNNCC 3 cut(s) 289, 373, 569
NmeAIII GCCGAG 1 cut(s) 191
PauI GCGCGC 1 cut(s) 523
PcsI WCGNNNNNNNCGW 2 cut(s) 413, 473
PdiI GCCGGC 2 cut(s) 151, 599
PfeI GAWTC 1 cut(s) 637
PkrI GCNGC 9 cut(s) 172, 263, 282, 296, 500, 535, 567, 623, 626
PluTI GGCGCC 1 cut(s) 571
PmaCI CACGTG 2 cut(s) 412, 630
PmlI CACGTG 2 cut(s) 412, 630
Ppu21I YACGTR 2 cut(s) 412, 630
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 367
PspCI CACGTG 2 cut(s) 412, 630
PspFI CCCAGC 2 cut(s) 257, 593
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 289, 373, 569
PspPI GGNCC 4 cut(s) 40, 48, 339, 591
PspPPI RGGWCCY 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 32
PteI GCGCGC 1 cut(s) 523
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SatI GCNGC 9 cut(s) 171, 262, 281, 295, 499, 534, 566, 622, 625
Sau3AI GATC 7 cut(s) 35, 143, 464, 492, 511, 540, 651
Sau96I GGNCC 4 cut(s) 40, 48, 339, 591
ScrFI CCNGG 2 cut(s) 369, 589
SduI GDGCHC 1 cut(s) 353
SfoI GGCGCC 1 cut(s) 569
SgrAI CRCCGGYG 1 cut(s) 149
SinI GGWCC 3 cut(s) 40, 48, 339
SspDI GGCGCC 1 cut(s) 567
SspMI CTAG 2 cut(s) 15, 647
StyD4I CCNGG 2 cut(s) 367, 587
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 2 cut(s) 414, 632
TaqI TCGA 1 cut(s) 416
TaqII GACCGA 1 cut(s) 28
TauI GCSGC 7 cut(s) 173, 264, 283, 501, 536, 568, 627
TfiI GAWTC 1 cut(s) 637
TscAI CASTG 1 cut(s) 58
TseI GCWGC 2 cut(s) 294, 621
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 4 cut(s) 211, 215, 262, 572
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 3 cut(s) 40, 48, 339
XbaI TCTAGA 1 cut(s) 14
XspI CTAG 2 cut(s) 15, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.