pycom15g11680

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001520
Physical Location & Seq
Reverse (-)
7914102 .. 7914824
723 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g11680.1

Sequence Viewer

Length: 723 bp
ATGGCGACCGCATCTTATTCATCGAGAGCGAGAACCCGGTCCAATGGAAGCGGACCGGTCCTCCGCTCGCTCTCACCTTCTGGGAGGTTCTACACGGCTTCCAATGGCGCGATCTCGTCATCCGCATCAGGTTTCGCTTCTTCGACAAGCTCCAGCTTCTCGTCTCCGGCCTCCGCCTTCTTCCAACACCACCAGGAAAACCACTACTACAATCAGCAGATCCACAACCACCACCACCACCGATCGGCGTCTCCGACGCGTGTCAATCTCTACACCTCCTCCTCACCGTCTCCGTCCGTCCGGTTCTCCATCGACCACCGATCCATCTCTCCCAACCATCATTCGAACCGATCCATCGCCGTTTCGAAGAAAACCGGACCGATTTCGATGCCAAAGAAGACCTGTATGTGCTCCCCGACGTCTCATCCGGGATCATTTCGCTGCAGCCTCCACAAGAACCAGGGCGGGAGTCAAAACACCGGATCTTTCCCGTCGAACAGGTTGAATATGCGCACAGATCGATCGATCCGCTATGACGAACTCGCTGGTTCGAATCGGTGGAGTCGAAGGCGAGTGGGTGAAGCGAGCCTTGACCGCCCTGATTCGGCCTTGCGCTCACCAGCAGCGGCGGAGAGCTGGGTTTCAGCCGCGGCCGAGCCGGCTCTCCGTCATGTCCACCGCCCAGGACTAGAGGCGAGTTACGATTCACATCGATCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.16

Weight (kDa)

10.99

Isoelectric Point (pI)

78.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 422
Acc16I TGCGCA 1 cut(s) 512
AccBSI CCGCTC 1 cut(s) 66
AccII CGCG 3 cut(s) 110, 259, 650
AclWI GGATC 6 cut(s) 214, 315, 345, 439, 490, 520
AcoI YGGCCR 1 cut(s) 651
AcyI GRCGYC 2 cut(s) 248, 419
AfiI CCNNNNNNNGG 2 cut(s) 244, 604
AflIII ACRYGT 1 cut(s) 257
AgeI ACCGGT 1 cut(s) 55
AgsI TTSAA 1 cut(s) 505
AjnI CCWGG 3 cut(s) 192, 459, 682
AluBI AGCT 3 cut(s) 150, 156, 636
AluI AGCT 3 cut(s) 150, 156, 636
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 4 cut(s) 168, 255, 294, 426
AlwI GGATC 6 cut(s) 214, 315, 345, 439, 490, 520
AoxI GGCC 3 cut(s) 168, 606, 651
ApeKI GCWGC 3 cut(s) 441, 444, 623
AsiGI ACCGGT 1 cut(s) 55
AspLEI GCGC 3 cut(s) 110, 513, 615
AspS9I GGNCC 4 cut(s) 39, 53, 58, 377
AsuC2I CCSGG 2 cut(s) 37, 429
AsuHPI GGTGA 4 cut(s) 66, 276, 590, 609
AsuII TTCGAA 3 cut(s) 344, 365, 551
AvaII GGWCC 4 cut(s) 39, 53, 58, 377
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 413
BbvI GCAGC 3 cut(s) 428, 456, 635
BccI CCATC 4 cut(s) 317, 332, 345, 362
BceAI ACGGC 2 cut(s) 111, 344
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 3 cut(s) 194, 461, 684
BcnI CCSGG 2 cut(s) 37, 429
BcoDI GTCTC 4 cut(s) 168, 255, 294, 426
BfaI CTAG 1 cut(s) 689
BfmI CTRYAG 1 cut(s) 442
BglI GCCNNNNNGGC 1 cut(s) 659
BisI GCNGC 6 cut(s) 442, 445, 624, 627, 648, 651
BlsI GCNGC 6 cut(s) 443, 446, 625, 628, 649, 652
Bme1390I CCNGG 5 cut(s) 37, 194, 429, 461, 684
Bme18I GGWCC 4 cut(s) 39, 53, 58, 377
BmgT120I GGNCC 4 cut(s) 39, 53, 58, 377
BmrFI CCNGG 5 cut(s) 37, 194, 429, 461, 684
BmsI GCATC 3 cut(s) 20, 134, 378
BoxI GACNNNNGTC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 136
Bpu14I TTCGAA 3 cut(s) 344, 365, 551
BpuMI CCSGG 2 cut(s) 37, 429
Bsa29I ATCGAT 3 cut(s) 520, 524, 712
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 2 cut(s) 248, 419
BsaJI CCNNGG 3 cut(s) 460, 648, 682
BsaWI WCCGGW 4 cut(s) 55, 300, 374, 479
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 604
Bse118I RCCGGY 2 cut(s) 55, 658
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 3 cut(s) 194, 461, 684
BseCI ATCGAT 3 cut(s) 520, 524, 712
BseDI CCNNGG 3 cut(s) 460, 648, 682
BseGI GGATG 2 cut(s) 119, 424
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 244, 604
BseRI GAGGAG 2 cut(s) 268, 271
BseX3I CGGCCG 1 cut(s) 651
BseXI GCAGC 3 cut(s) 428, 456, 635
BseYI CCCAGC 1 cut(s) 636
Bsh1236I CGCG 3 cut(s) 110, 259, 650
Bsh1285I CGRYCG 4 cut(s) 9, 245, 524, 654
BshFI GGCC 3 cut(s) 170, 608, 653
BshTI ACCGGT 1 cut(s) 55
BshVI ATCGAT 3 cut(s) 520, 524, 712
BsiEI CGRYCG 4 cut(s) 9, 245, 524, 654
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 8 cut(s) 37, 56, 167, 301, 375, 428, 480, 659
BslI CCNNNNNNNGG 2 cut(s) 244, 604
BsmAI GTCTC 4 cut(s) 168, 255, 294, 426
BsmBI CGTCTC 4 cut(s) 168, 255, 294, 426
BsnI GGCC 3 cut(s) 170, 608, 653
Bsp119I TTCGAA 3 cut(s) 344, 365, 551
Bsp1286I GDGCHC 1 cut(s) 413
BspANI GGCC 3 cut(s) 170, 608, 653
BspDI ATCGAT 3 cut(s) 520, 524, 712
BspFNI CGCG 3 cut(s) 110, 259, 650
BspMAI CTGCAG 1 cut(s) 446
BspPI GGATC 6 cut(s) 214, 315, 345, 439, 490, 520
BspT104I TTCGAA 3 cut(s) 344, 365, 551
BsrBI CCGCTC 1 cut(s) 66
BsrFI RCCGGY 2 cut(s) 55, 658
BssAI RCCGGY 2 cut(s) 55, 658
BssECI CCNNGG 3 cut(s) 460, 648, 682
BssNI GRCGYC 2 cut(s) 248, 419
Bst2UI CCWGG 3 cut(s) 194, 461, 684
Bst4CI ACNGT 1 cut(s) 288
BstACI GRCGYC 2 cut(s) 248, 419
BstBI TTCGAA 3 cut(s) 344, 365, 551
BstC8I GCNNGC 3 cut(s) 68, 586, 660
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 2 cut(s) 119, 424
BstFNI CGCG 3 cut(s) 110, 259, 650
BstHHI GCGC 3 cut(s) 110, 513, 615
BstMAI GTCTC 4 cut(s) 168, 255, 294, 426
BstMCI CGRYCG 4 cut(s) 9, 245, 524, 654
BstMWI GCNNNNNNNGC 2 cut(s) 594, 659
BstNI CCWGG 3 cut(s) 194, 461, 684
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 5 cut(s) 35, 192, 427, 459, 682
BstSFI CTRYAG 1 cut(s) 442
BstUI CGCG 3 cut(s) 110, 259, 650
BstV1I GCAGC 3 cut(s) 428, 456, 635
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 2 cut(s) 219, 482
BstYI RGATCY 2 cut(s) 219, 482
BstZI CGGCCG 1 cut(s) 651
Bsu15I ATCGAT 3 cut(s) 520, 524, 712
BsuRI GGCC 3 cut(s) 170, 608, 653
BsuTUI ATCGAT 3 cut(s) 520, 524, 712
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 1 cut(s) 340
BtsCI GGATG 2 cut(s) 119, 424
Cac8I GCNNGC 3 cut(s) 68, 586, 660
CfoI GCGC 3 cut(s) 110, 513, 615
Cfr10I RCCGGY 2 cut(s) 55, 658
Cfr13I GGNCC 4 cut(s) 39, 53, 58, 377
Cfr42I CCGCGG 1 cut(s) 651
ClaI ATCGAT 3 cut(s) 520, 524, 712
CpoI CGGWCCG 2 cut(s) 53, 377
CseI GACGC 2 cut(s) 237, 265
CspAI ACCGGT 1 cut(s) 55
CspI CGGWCCG 2 cut(s) 53, 377
CviAII CATG 1 cut(s) 671
EaeI YGGCCR 1 cut(s) 651
EagI CGGCCG 1 cut(s) 651
EciI GGCGGA 2 cut(s) 163, 644
EclXI CGGCCG 1 cut(s) 651
Eco47I GGWCC 4 cut(s) 39, 53, 58, 377
Eco52I CGGCCG 1 cut(s) 651
EcoRII CCWGG 3 cut(s) 192, 459, 682
Esp3I CGTCTC 4 cut(s) 168, 255, 294, 426
FaeI CATG 1 cut(s) 674
FaiI YATR 4 cut(s) 407, 509, 534, 672
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FatI CATG 1 cut(s) 670
FauI CCCGC 1 cut(s) 458
Fnu4HI GCNGC 6 cut(s) 442, 445, 624, 627, 648, 651
FokI GGATG 2 cut(s) 106, 411
Fsp4HI GCNGC 6 cut(s) 442, 445, 624, 627, 648, 651
FspAI RTGCGCAY 1 cut(s) 512
FspBI CTAG 1 cut(s) 689
FspI TGCGCA 1 cut(s) 512
GlaI GCGC 3 cut(s) 109, 512, 614
GluI GCNGC 6 cut(s) 442, 445, 624, 627, 648, 651
GsaI CCCAGC 1 cut(s) 640
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 3 cut(s) 170, 608, 653
HapII CCGG 8 cut(s) 37, 56, 167, 301, 375, 428, 480, 659
HgaI GACGC 2 cut(s) 237, 265
HhaI GCGC 3 cut(s) 110, 513, 615
Hin1I GRCGYC 2 cut(s) 248, 419
Hin1II CATG 1 cut(s) 674
Hin6I GCGC 3 cut(s) 108, 511, 613
HinP1I GCGC 3 cut(s) 108, 511, 613
HinfI GANTC 5 cut(s) 469, 553, 562, 602, 704
HpaII CCGG 8 cut(s) 37, 56, 167, 301, 375, 428, 480, 659
HphI GGTGA 4 cut(s) 66, 276, 590, 609
Hpy166II GTNNAC 1 cut(s) 676
Hpy188I TCNGA 2 cut(s) 255, 722
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 676
Hpy99I CGWCG 3 cut(s) 259, 421, 496
HpyAV CCTTC 3 cut(s) 87, 187, 561
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 1 cut(s) 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 594, 659
HpySE526I ACGT 1 cut(s) 419
Hsp92I GRCGYC 2 cut(s) 248, 419
Hsp92II CATG 1 cut(s) 674
HspAI GCGC 3 cut(s) 108, 511, 613
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
KspI CCGCGG 1 cut(s) 651
LmnI GCTCC 2 cut(s) 155, 416
Lsp1109I GCAGC 3 cut(s) 428, 456, 635
LweI GCATC 3 cut(s) 20, 134, 378
MaeI CTAG 1 cut(s) 689
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 698
MbiI CCGCTC 1 cut(s) 66
MboII GAAGA 4 cut(s) 132, 172, 379, 409
MflI RGATCY 2 cut(s) 219, 482
MhlI GDGCHC 1 cut(s) 413
MluI ACGCGT 1 cut(s) 257
MlyI GAGTC 2 cut(s) 478, 571
MmeI TCCRAC 2 cut(s) 208, 278
MnlI CCTC 8 cut(s) 71, 78, 181, 286, 289, 292, 458, 685
MroNI GCCGGC 1 cut(s) 658
MspA1I CMGCKG 2 cut(s) 626, 650
MspI CCGG 8 cut(s) 37, 56, 167, 301, 375, 428, 480, 659
MspR9I CCNGG 5 cut(s) 37, 194, 429, 461, 684
MvaI CCWGG 3 cut(s) 194, 461, 684
MvnI CGCG 3 cut(s) 110, 259, 650
MwoI GCNNNNNNNGC 2 cut(s) 594, 659
NaeI GCCGGC 1 cut(s) 660
NciI CCSGG 2 cut(s) 37, 429
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 1 cut(s) 674
NmeAIII GCCGAG 1 cut(s) 679
NsbI TGCGCA 1 cut(s) 512
NspV TTCGAA 3 cut(s) 344, 365, 551
PcsI WCGNNNNNNNCGW 2 cut(s) 251, 562
PdiI GCCGGC 1 cut(s) 660
PfeI GAWTC 3 cut(s) 553, 602, 704
PfoI TCCNGGA 1 cut(s) 427
PinAI ACCGGT 1 cut(s) 55
PkrI GCNGC 6 cut(s) 443, 446, 625, 628, 649, 652
Ple19I CGATCG 2 cut(s) 245, 524
PleI GAGTC 2 cut(s) 477, 570
PpsI GAGTC 2 cut(s) 477, 570
PshAI GACNNNNGTC 1 cut(s) 260
Psp6I CCWGG 3 cut(s) 192, 459, 682
PspFI CCCAGC 1 cut(s) 636
PspGI CCWGG 3 cut(s) 192, 459, 682
PspPI GGNCC 4 cut(s) 39, 53, 58, 377
PstI CTGCAG 1 cut(s) 446
PsuI RGATCY 2 cut(s) 219, 482
PvuI CGATCG 2 cut(s) 245, 524
Rsr2I CGGWCCG 2 cut(s) 53, 377
RsrII CGGWCCG 2 cut(s) 53, 377
SacII CCGCGG 1 cut(s) 651
SatI GCNGC 6 cut(s) 442, 445, 624, 627, 648, 651
Sau96I GGNCC 4 cut(s) 39, 53, 58, 377
SchI GAGTC 2 cut(s) 478, 571
ScrFI CCNGG 5 cut(s) 37, 194, 429, 461, 684
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 3 cut(s) 20, 134, 378
SfcI CTRYAG 1 cut(s) 442
Sfr303I CCGCGG 1 cut(s) 651
SfuI TTCGAA 3 cut(s) 344, 365, 551
SgrBI CCGCGG 1 cut(s) 651
SinI GGWCC 4 cut(s) 39, 53, 58, 377
SspMI CTAG 1 cut(s) 689
StyD4I CCNGG 5 cut(s) 35, 192, 427, 459, 682
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 422
TaqII GACCGA 1 cut(s) 394
TauI GCSGC 3 cut(s) 629, 650, 653
TfiI GAWTC 3 cut(s) 553, 602, 704
TseI GCWGC 3 cut(s) 441, 444, 623
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 3 cut(s) 282, 286, 656
VpaK11BI GGWCC 4 cut(s) 39, 53, 58, 377
XspI CTAG 1 cut(s) 689
ZraI GACGTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.