RchiOBHm_Chr6g0297351

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001520
Physical Location & Seq
Forward (+)
59049082 .. 59051146
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26687

Sequence Viewer

Length: 678 bp
ATGGCAACTGCATCTGCTTCATCTTCCCGAACCAGAACCCGGTCCAGTGGACCAGTTCTTCGCTCTCTTTCACCCTCTGGAAGGTTCTACACCGGCTCTTCCAATGCCTCAATCCAATCCACCGCTTCGGCTTTCGCCTCCTCCACCAGCTCCAGCTTCTCGTCTCGGTCGTCCGCCTTTTTCAACAACCACCAGGACCACCAGAGCCACTACCACCACACCGACTACCACCACCACCGTTCGGCTTCACCGACACGTGTCAATCTCTACACCTCCAGTGCTCTGTCACCAGCAGTCCGCTTCTCCATCGAGCACCGCTCCATCTCCCCAAACCGATCCATCACCGCTTCCAAGAAGAACGGCCCCATCGCGGCGGCCAGGAAGACGTGTATGTGCTCGCCGACGAATCATCCAGGCTCGTTTCGCTGCAGTCTTCACAAGAATCAAGGGAGTGCGAATCATCACAGCCACAATCAGACGCCGTATCCCAACAACAGGCTGAACATGCGTCGATCTGCCATGACGAACTCGCTGGTTCGAATCAGCGGCGTCGAGGGCGAGTGGGTGAAGAGAGCCTTGACGGCTCTGATTCGTCCTTCTTCGCACCAGCAGAGGCGGAGAGCCGGGTTCCAGCCACGGCAGAGCAGACTCTCCGTCATGTCCAAGGCCGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.66

Weight (kDa)

11.79

Isoelectric Point (pI)

75.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 318
AccII CGCG 1 cut(s) 371
AciI CCGC 9 cut(s) 123, 174, 298, 316, 345, 371, 374, 546, 616
AclWI GGATC 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 375
AcvI CACGTG 1 cut(s) 257
AcyI GRCGYC 2 cut(s) 479, 549
AfiI CCNNNNNNNGG 5 cut(s) 39, 81, 241, 370, 495
AflIII ACRYGT 3 cut(s) 254, 256, 386
AgsI TTSAA 1 cut(s) 184
AhdI GACNNNNNGTC 1 cut(s) 653
AjiI CACGTC 1 cut(s) 387
AjnI CCWGG 3 cut(s) 192, 377, 412
AluBI AGCT 2 cut(s) 150, 156
AluI AGCT 2 cut(s) 150, 156
Alw21I GWGCWC 3 cut(s) 283, 315, 398
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 330
AoxI GGCC 3 cut(s) 361, 375, 666
ApeKI GCWGC 1 cut(s) 426
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspS9I GGNCC 4 cut(s) 42, 50, 196, 362
AsuC2I CCSGG 2 cut(s) 40, 625
AsuHPI GGTGA 5 cut(s) 63, 240, 279, 334, 577
AsuII TTCGAA 1 cut(s) 538
AvaII GGWCC 3 cut(s) 42, 50, 196
BbrPI CACGTG 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 389, 425
Bbv12I GWGCWC 3 cut(s) 283, 315, 398
BbvI GCAGC 1 cut(s) 413
BccI CCATC 4 cut(s) 314, 329, 347, 374
BceAI ACGGC 4 cut(s) 376, 466, 597, 653
BciT130I CCWGG 3 cut(s) 194, 379, 414
BciVI GTATCC 1 cut(s) 495
BcnI CCSGG 2 cut(s) 40, 625
BcoDI GTCTC 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 427
BfuI GTATCC 1 cut(s) 495
BglI GCCNNNNNGGC 1 cut(s) 581
BisI GCNGC 4 cut(s) 372, 375, 427, 547
BlsI GCNGC 4 cut(s) 373, 376, 428, 548
Bme1390I CCNGG 5 cut(s) 40, 194, 379, 414, 625
Bme18I GGWCC 3 cut(s) 42, 50, 196
BmeRI GACNNNNNGTC 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 387
BmgT120I GGNCC 4 cut(s) 42, 50, 196, 362
BmiI GGNNCC 2 cut(s) 364, 629
BmrFI CCNGG 5 cut(s) 40, 194, 379, 414, 625
BmsI GCATC 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 257
BpiI GAAGAC 2 cut(s) 389, 425
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 2 cut(s) 136, 259
Bpu14I TTCGAA 1 cut(s) 538
BpuMI CCSGG 2 cut(s) 40, 625
BsaAI YACGTR 1 cut(s) 257
BsaHI GRCGYC 2 cut(s) 479, 549
BsaJI CCNNGG 2 cut(s) 635, 663
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 81, 241, 370, 495
Bse118I RCCGGY 2 cut(s) 92, 668
Bse1I ACTGG 3 cut(s) 45, 53, 276
BseBI CCWGG 3 cut(s) 194, 379, 414
BseDI CCNNGG 2 cut(s) 635, 663
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 5 cut(s) 39, 81, 241, 370, 495
BseNI ACTGG 3 cut(s) 45, 53, 276
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 413
Bsh1236I CGCG 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 3 cut(s) 363, 377, 668
BsiEI CGRYCG 1 cut(s) 170
BsiHKAI GWGCWC 3 cut(s) 283, 315, 398
BsiSI CCGG 4 cut(s) 40, 93, 624, 669
BslI CCNNNNNNNGG 5 cut(s) 39, 81, 241, 370, 495
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsnI GGCC 3 cut(s) 363, 377, 668
Bsp119I TTCGAA 1 cut(s) 538
Bsp1286I GDGCHC 3 cut(s) 283, 315, 398
Bsp143I GATC 2 cut(s) 335, 512
BspACI CCGC 9 cut(s) 123, 174, 298, 316, 345, 371, 374, 546, 616
BspANI GGCC 3 cut(s) 363, 377, 668
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 364, 629
BspMAI CTGCAG 1 cut(s) 431
BspPI GGATC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 538
BsrBI CCGCTC 1 cut(s) 318
BsrFI RCCGGY 2 cut(s) 92, 668
BsrI ACTGG 3 cut(s) 45, 53, 276
BssAI RCCGGY 2 cut(s) 92, 668
BssECI CCNNGG 2 cut(s) 635, 663
BssMI GATC 2 cut(s) 335, 512
BssNI GRCGYC 2 cut(s) 479, 549
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 3 cut(s) 194, 379, 414
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 103, 563
BstACI GRCGYC 2 cut(s) 479, 549
BstBAI YACGTR 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 398
BstDSI CCRYGG 1 cut(s) 635
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 371
BstKTI GATC 2 cut(s) 338, 515
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 335, 512
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 4 cut(s) 423, 505, 555, 581
BstNI CCWGG 3 cut(s) 194, 379, 414
BstNSI RCATGY 1 cut(s) 508
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 5 cut(s) 38, 192, 377, 412, 623
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 413
BstV2I GAAGAC 2 cut(s) 389, 425
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 3 cut(s) 363, 377, 668
BtgI CCRYGG 1 cut(s) 635
BtgZI GCGATG 1 cut(s) 352
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 52, 283
Cac8I GCNNGC 1 cut(s) 398
Cfr10I RCCGGY 2 cut(s) 92, 668
Cfr13I GGNCC 4 cut(s) 42, 50, 196, 362
CseI GACGC 3 cut(s) 487, 497, 538
CviAII CATG 3 cut(s) 505, 520, 658
DpnI GATC 2 cut(s) 337, 514
DpnII GATC 2 cut(s) 335, 512
DriI GACNNNNNGTC 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 103, 563
Eam1105I GACNNNNNGTC 1 cut(s) 653
EarI CTCTTC 2 cut(s) 103, 563
EciI GGCGGA 2 cut(s) 163, 631
Eco130I CCWWGG 1 cut(s) 663
Eco47I GGWCC 3 cut(s) 42, 50, 196
Eco72I CACGTG 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRII CCWGG 3 cut(s) 192, 377, 412
EcoT14I CCWWGG 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 3 cut(s) 508, 523, 661
FaiI YATR 4 cut(s) 392, 506, 521, 659
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FatI CATG 3 cut(s) 504, 519, 657
Fnu4HI GCNGC 4 cut(s) 372, 375, 427, 547
FokI GGATG 1 cut(s) 396
Fsp4HI GCNGC 4 cut(s) 372, 375, 427, 547
GluI GCNGC 4 cut(s) 372, 375, 427, 547
GsuI CTGGAG 2 cut(s) 136, 259
HaeIII GGCC 3 cut(s) 363, 377, 668
HapII CCGG 4 cut(s) 40, 93, 624, 669
HgaI GACGC 3 cut(s) 487, 497, 538
Hin1I GRCGYC 2 cut(s) 479, 549
Hin1II CATG 3 cut(s) 508, 523, 661
HinfI GANTC 6 cut(s) 406, 442, 457, 540, 589, 648
HpaII CCGG 4 cut(s) 40, 93, 624, 669
HphI GGTGA 5 cut(s) 63, 240, 279, 334, 577
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 477, 588
Hpy188III TCNNGA 2 cut(s) 27, 78
Hpy8I GTNNAC 1 cut(s) 50
Hpy99I CGWCG 3 cut(s) 406, 513, 554
HpyAV CCTTC 2 cut(s) 75, 606
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 256, 386
HpyCH4V TGCA 2 cut(s) 11, 429
HpyF10VI GCNNNNNNNGC 4 cut(s) 423, 505, 555, 581
HpySE526I ACGT 2 cut(s) 256, 386
Hsp92I GRCGYC 2 cut(s) 479, 549
Hsp92II CATG 3 cut(s) 508, 523, 661
Kzo9I GATC 2 cut(s) 335, 512
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 155, 323
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 20
MaeII ACGT 2 cut(s) 256, 386
MaeIII GTNAC 1 cut(s) 285
MalI GATC 2 cut(s) 337, 514
MbiI CCGCTC 1 cut(s) 318
MboI GATC 2 cut(s) 335, 512
MboII GAAGA 8 cut(s) 15, 50, 90, 367, 394, 425, 580, 591
MhlI GDGCHC 3 cut(s) 283, 315, 398
MlyI GAGTC 1 cut(s) 642
MnlI CCTC 7 cut(s) 85, 118, 148, 151, 283, 547, 606
MspA1I CMGCKG 1 cut(s) 546
MspI CCGG 4 cut(s) 40, 93, 624, 669
MspR9I CCNGG 5 cut(s) 40, 194, 379, 414, 625
MvaI CCWGG 3 cut(s) 194, 379, 414
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 423, 505, 555, 581
NciI CCSGG 2 cut(s) 40, 625
NdeII GATC 2 cut(s) 335, 512
NlaIII CATG 3 cut(s) 508, 523, 661
NlaIV GGNNCC 2 cut(s) 364, 629
NmuCI GTSAC 1 cut(s) 285
NspI RCATGY 1 cut(s) 508
NspV TTCGAA 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 248
PfeI GAWTC 5 cut(s) 406, 442, 457, 540, 589
PkrI GCNGC 4 cut(s) 373, 376, 428, 548
PleI GAGTC 1 cut(s) 642
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
PpsI GAGTC 1 cut(s) 642
Ppu21I YACGTR 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 257
Psp6I CCWGG 3 cut(s) 192, 377, 412
PspCI CACGTG 1 cut(s) 257
PspGI CCWGG 3 cut(s) 192, 377, 412
PspN4I GGNNCC 2 cut(s) 364, 629
PspPI GGNCC 4 cut(s) 42, 50, 196, 362
PstI CTGCAG 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 103
SatI GCNGC 4 cut(s) 372, 375, 427, 547
Sau3AI GATC 2 cut(s) 335, 512
Sau96I GGNCC 4 cut(s) 42, 50, 196, 362
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 5 cut(s) 40, 194, 379, 414, 625
SduI GDGCHC 3 cut(s) 283, 315, 398
SetI ASST 6 cut(s) 86, 152, 158, 259, 275, 389
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 538
SinI GGWCC 3 cut(s) 42, 50, 196
SsiI CCGC 9 cut(s) 123, 174, 298, 316, 345, 371, 374, 546, 616
StyD4I CCNGG 5 cut(s) 38, 192, 377, 412, 623
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 2 cut(s) 259, 389
TaqI TCGA 4 cut(s) 309, 511, 538, 552
TaqII GACCGA 1 cut(s) 156
TauI GCSGC 3 cut(s) 374, 377, 549
TfiI GAWTC 5 cut(s) 406, 442, 457, 540, 589
TscAI CASTG 2 cut(s) 52, 283
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 2 cut(s) 52, 283
VpaK11BI GGWCC 3 cut(s) 42, 50, 196
XagI CCTNNNNNAGG 1 cut(s) 79
XceI RCATGY 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.