Rw6G033300

Serine-rich protein-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001520
Physical Location & Seq
Forward (+)
57786909 .. 57787589
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033300.1

Sequence Viewer

Length: 681 bp
ATGGCGACTGCATCTGCTTCATCTTCCCGAACCAGAACCCGGTCCAGCGGACCAGTTCTTCGCTCTCTTTCACCCTCTGGAAGGTTCTACACCGGCTCTTCCAATGCCTCAATCCAATCCACCGCTTCGGCTTTCGCCTCCTCCACCAGCTCCAGCTTCTCGTCTCGGTCGTCCGCCTTTTTCAACAACCACCAGGACCACCACAGCCACTACCACCACCACACCGACTACCACCACCACCGTTCGGCTTCACCGACACGTGTCAATCTCTACACCTCCAGTGCTCTGTCACCAGCTGTCCGCTTCTCCATCGAGCACCGCTCCATCTCCCCAAACCGATCCATCACCGCTTCCAAGAAGAACGGCCCCATCGCGGCGGCCAGGAAGACGTGTATGTGCTCGCCGACGAATCATCCAGGCTCGTTTCGCTGCAGTCTTCACAAGAACCAAGGGAGTGCGAATCATCACAACCACAACCAGACGCCGTATCCCAACAACAGGCTGAACATGCGCAGATCTGCCATGACGAACTCGCTGGTTCGAATCAGCGGCGTCGAGGGCGAGTGGGTGAAGAGAGCCTTGACGGCTCTGATTCGTCCTTCTTCGCACCAGCAGAGGCGGAGAGCCGGGTTCCAGCCACGGCAGAGCAGGCTCTCCGTCATGTCCAAGGCCGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.84

Weight (kDa)

11.79

Isoelectric Point (pI)

73.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 512
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 1 cut(s) 374
AclWI GGATC 1 cut(s) 333
AcoI YGGCCR 1 cut(s) 378
AcvI CACGTG 1 cut(s) 260
AcyI GRCGYC 2 cut(s) 482, 552
AfiI CCNNNNNNNGG 5 cut(s) 39, 81, 244, 373, 498
AflIII ACRYGT 3 cut(s) 257, 259, 389
AgsI TTSAA 1 cut(s) 184
AjiI CACGTC 1 cut(s) 390
AjnI CCWGG 3 cut(s) 192, 380, 415
AluBI AGCT 3 cut(s) 150, 156, 296
AluI AGCT 3 cut(s) 150, 156, 296
Alw21I GWGCWC 3 cut(s) 286, 318, 401
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 333
AoxI GGCC 3 cut(s) 364, 378, 669
ApeKI GCWGC 1 cut(s) 429
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspLEI GCGC 1 cut(s) 513
AspS9I GGNCC 4 cut(s) 42, 50, 196, 365
AsuC2I CCSGG 2 cut(s) 40, 628
AsuHPI GGTGA 5 cut(s) 63, 243, 282, 337, 580
AsuII TTCGAA 1 cut(s) 541
AvaII GGWCC 3 cut(s) 42, 50, 196
BbrPI CACGTG 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 392, 428
Bbv12I GWGCWC 3 cut(s) 286, 318, 401
BbvI GCAGC 1 cut(s) 416
BccI CCATC 4 cut(s) 317, 332, 350, 377
BceAI ACGGC 4 cut(s) 379, 469, 600, 656
BciT130I CCWGG 3 cut(s) 194, 382, 417
BciVI GTATCC 1 cut(s) 498
BcnI CCSGG 2 cut(s) 40, 628
BcoDI GTCTC 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 430
BfuI GTATCC 1 cut(s) 498
BglI GCCNNNNNGGC 1 cut(s) 584
BglII AGATCT 1 cut(s) 515
BisI GCNGC 4 cut(s) 375, 378, 430, 550
BlsI GCNGC 4 cut(s) 376, 379, 431, 551
Bme1390I CCNGG 5 cut(s) 40, 194, 382, 417, 628
Bme18I GGWCC 3 cut(s) 42, 50, 196
BmgBI CACGTC 1 cut(s) 390
BmgT120I GGNCC 4 cut(s) 42, 50, 196, 365
BmiI GGNNCC 2 cut(s) 367, 632
BmrFI CCNGG 5 cut(s) 40, 194, 382, 417, 628
BmsI GCATC 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 260
BpiI GAAGAC 2 cut(s) 392, 428
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 2 cut(s) 136, 262
Bpu14I TTCGAA 1 cut(s) 541
BpuMI CCSGG 2 cut(s) 40, 628
BsaAI YACGTR 1 cut(s) 260
BsaHI GRCGYC 2 cut(s) 482, 552
BsaJI CCNNGG 3 cut(s) 448, 638, 666
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 81, 244, 373, 498
Bse118I RCCGGY 2 cut(s) 92, 671
Bse1I ACTGG 2 cut(s) 53, 279
BseBI CCWGG 3 cut(s) 194, 382, 417
BseDI CCNNGG 3 cut(s) 448, 638, 666
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 5 cut(s) 39, 81, 244, 373, 498
BseNI ACTGG 2 cut(s) 53, 279
BseRI GAGGAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 374
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 3 cut(s) 366, 380, 671
BsiEI CGRYCG 1 cut(s) 170
BsiHKAI GWGCWC 3 cut(s) 286, 318, 401
BsiSI CCGG 4 cut(s) 40, 93, 627, 672
BslI CCNNNNNNNGG 5 cut(s) 39, 81, 244, 373, 498
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsnI GGCC 3 cut(s) 366, 380, 671
Bsp119I TTCGAA 1 cut(s) 541
Bsp1286I GDGCHC 3 cut(s) 286, 318, 401
Bsp143I GATC 2 cut(s) 338, 515
BspANI GGCC 3 cut(s) 366, 380, 671
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 2 cut(s) 367, 632
BspMAI CTGCAG 1 cut(s) 434
BspPI GGATC 1 cut(s) 333
BspQI GCTCTTC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 321
BsrFI RCCGGY 2 cut(s) 92, 671
BsrI ACTGG 2 cut(s) 53, 279
BssAI RCCGGY 2 cut(s) 92, 671
BssECI CCNNGG 3 cut(s) 448, 638, 666
BssMI GATC 2 cut(s) 338, 515
BssNI GRCGYC 2 cut(s) 482, 552
BssT1I CCWWGG 2 cut(s) 448, 666
Bst2UI CCWGG 3 cut(s) 194, 382, 417
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 103, 566
BstACI GRCGYC 2 cut(s) 482, 552
BstBAI YACGTR 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 541
BstC8I GCNNGC 2 cut(s) 401, 650
BstDSI CCRYGG 1 cut(s) 638
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 2 cut(s) 341, 518
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 338, 515
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 5 cut(s) 426, 508, 558, 584, 649
BstNI CCWGG 3 cut(s) 194, 382, 417
BstNSI RCATGY 1 cut(s) 511
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 5 cut(s) 38, 192, 380, 415, 626
BstSFI CTRYAG 1 cut(s) 430
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 416
BstV2I GAAGAC 2 cut(s) 392, 428
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 3 cut(s) 366, 380, 671
BtgI CCRYGG 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 355
BtrI CACGTC 1 cut(s) 390
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 401, 650
CfoI GCGC 1 cut(s) 513
Cfr10I RCCGGY 2 cut(s) 92, 671
Cfr13I GGNCC 4 cut(s) 42, 50, 196, 365
CseI GACGC 2 cut(s) 490, 541
CviAII CATG 3 cut(s) 508, 523, 661
DpnI GATC 2 cut(s) 340, 517
DpnII GATC 2 cut(s) 338, 515
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 2 cut(s) 103, 566
EarI CTCTTC 2 cut(s) 103, 566
EciI GGCGGA 2 cut(s) 163, 634
Eco130I CCWWGG 2 cut(s) 448, 666
Eco47I GGWCC 3 cut(s) 42, 50, 196
Eco72I CACGTG 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRII CCWGG 3 cut(s) 192, 380, 415
EcoT14I CCWWGG 2 cut(s) 448, 666
ErhI CCWWGG 2 cut(s) 448, 666
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 3 cut(s) 511, 526, 664
FaiI YATR 4 cut(s) 395, 509, 524, 662
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FatI CATG 3 cut(s) 507, 522, 660
Fnu4HI GCNGC 4 cut(s) 375, 378, 430, 550
FokI GGATG 1 cut(s) 399
Fsp4HI GCNGC 4 cut(s) 375, 378, 430, 550
FspI TGCGCA 1 cut(s) 512
GlaI GCGC 1 cut(s) 512
GluI GCNGC 4 cut(s) 375, 378, 430, 550
GsuI CTGGAG 2 cut(s) 136, 262
HaeIII GGCC 3 cut(s) 366, 380, 671
HapII CCGG 4 cut(s) 40, 93, 627, 672
HgaI GACGC 2 cut(s) 490, 541
HhaI GCGC 1 cut(s) 513
Hin1I GRCGYC 2 cut(s) 482, 552
Hin1II CATG 3 cut(s) 511, 526, 664
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HinfI GANTC 4 cut(s) 409, 460, 543, 592
HpaII CCGG 4 cut(s) 40, 93, 627, 672
HphI GGTGA 5 cut(s) 63, 243, 282, 337, 580
Hpy188I TCNGA 1 cut(s) 591
Hpy188III TCNNGA 2 cut(s) 27, 78
Hpy99I CGWCG 2 cut(s) 409, 557
HpyAV CCTTC 2 cut(s) 75, 609
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 2 cut(s) 259, 389
HpyCH4V TGCA 2 cut(s) 11, 432
HpyF10VI GCNNNNNNNGC 5 cut(s) 426, 508, 558, 584, 649
HpySE526I ACGT 2 cut(s) 259, 389
Hsp92I GRCGYC 2 cut(s) 482, 552
Hsp92II CATG 3 cut(s) 511, 526, 664
HspAI GCGC 1 cut(s) 511
Kzo9I GATC 2 cut(s) 338, 515
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 155, 326
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 1 cut(s) 20
MaeII ACGT 2 cut(s) 259, 389
MaeIII GTNAC 1 cut(s) 288
MalI GATC 2 cut(s) 340, 517
MbiI CCGCTC 1 cut(s) 321
MboI GATC 2 cut(s) 338, 515
MboII GAAGA 8 cut(s) 15, 50, 90, 370, 397, 428, 583, 594
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 3 cut(s) 286, 318, 401
MnlI CCTC 7 cut(s) 85, 118, 148, 151, 286, 550, 609
MspA1I CMGCKG 3 cut(s) 48, 296, 549
MspI CCGG 4 cut(s) 40, 93, 627, 672
MspR9I CCNGG 5 cut(s) 40, 194, 382, 417, 628
MvaI CCWGG 3 cut(s) 194, 382, 417
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 5 cut(s) 426, 508, 558, 584, 649
NciI CCSGG 2 cut(s) 40, 628
NdeII GATC 2 cut(s) 338, 515
NlaIII CATG 3 cut(s) 511, 526, 664
NlaIV GGNNCC 2 cut(s) 367, 632
NmuCI GTSAC 1 cut(s) 288
NsbI TGCGCA 1 cut(s) 512
NspI RCATGY 1 cut(s) 511
NspV TTCGAA 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 103
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 251
PfeI GAWTC 4 cut(s) 409, 460, 543, 592
PkrI GCNGC 4 cut(s) 376, 379, 431, 551
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
Ppu21I YACGTR 1 cut(s) 260
PshAI GACNNNNGTC 1 cut(s) 260
Psp6I CCWGG 3 cut(s) 192, 380, 415
PspCI CACGTG 1 cut(s) 260
PspGI CCWGG 3 cut(s) 192, 380, 415
PspN4I GGNNCC 2 cut(s) 367, 632
PspPI GGNCC 4 cut(s) 42, 50, 196, 365
PstI CTGCAG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 103
SatI GCNGC 4 cut(s) 375, 378, 430, 550
Sau3AI GATC 2 cut(s) 338, 515
Sau96I GGNCC 4 cut(s) 42, 50, 196, 365
ScrFI CCNGG 5 cut(s) 40, 194, 382, 417, 628
SduI GDGCHC 3 cut(s) 286, 318, 401
SetI ASST 7 cut(s) 86, 152, 158, 262, 278, 298, 392
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 430
SfuI TTCGAA 1 cut(s) 541
SinI GGWCC 3 cut(s) 42, 50, 196
StyD4I CCNGG 5 cut(s) 38, 192, 380, 415, 626
StyI CCWWGG 2 cut(s) 448, 666
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 2 cut(s) 262, 392
TaqI TCGA 3 cut(s) 312, 541, 555
TaqII GACCGA 1 cut(s) 156
TauI GCSGC 3 cut(s) 377, 380, 552
TfiI GAWTC 4 cut(s) 409, 460, 543, 592
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 3 cut(s) 42, 50, 196
XagI CCTNNNNNAGG 1 cut(s) 79
XceI RCATGY 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.